RNA id: XM_036956804.1


Basic Information

Item Value
RNA id XM_036956804.1
length 1640
RNA type mRNA
GC content 0.45
exon number 6
gene id LOC110507938
representative True

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 9487581 ~ 9508460 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GCTTGCTGAAGAGATCCACTAGTTTCATTGGAGAGATCTTCATTTGATTGGAAATTGCTTCTGGTGTAGGATTGACTAAACATTTGCTGACACTATTGGAGGAATAATGCATTTCAGTTCAAATGCAAAGCAGTTTGTTCTCCTTCTCATTGTTGGAATTGTTTTGCTTCTGGGGTATGTTCACTACAGCTTCTTCAATGAAAGGCTCAATGGAGATATCCCGGTTGATAAGGACCAGAGGAACACCAGGCTATTGTACAAGCAGCCCAGTGTCTTGGCGGGTCGTACTGATGTGGTGGCAGTCACCCCGTGGTTGGCACCCATCGTCTGGGATGGAACCTTTGACCCTGACCTCGTCGACACAATCTACAAGTCCATGAACATCACCATAGCAACCACCGTGTTTGCCGTTGGAAAATACGTCCTCTTTCTCCGAGATTTCCTGGAGACAGCAGAGAAACACTTCCTGGTCGACTTCAACGTGCGCTACTACGTTTTCACAGATCGTCCCGACGATGTTCCGTCAGTGAACCTGTCTCAGGGGAGACATTTAAGTGTGATCCAGGTGCCAGGTTCAAACCGCTGGCAGGAGATATCAGCCCGGAGGATGGAGATCATCCAGACAGCCATCGAACGTCAGATCAGCAGGGAGGCCGACTACATCTTCTGTCTGGACGTGGACAGCAAGTTCCACGCTCGCTGGGGAGCCGAGTCTCTGGGCAGGCTGGTTGCTGTGATTCACCCATGGTTCTACCAGGCGACCCGTGACCACTTCACATATGAACGGCGTCCAGCCTCGACAGCCTACATCCCCATGGATGAGGGAGATTACTACTATGCCGGGGCCGTGTTCGGGGGGTTGTTGGAGGAAGTGTACACACTAACAAAGGTATGTCGGAACCAGCTTGAAGAGGACGCAAGGAATTCCATCGAGGCTGCCTGGCAGGAGGAGAGTCACCTCAACAGGTACCTGCTTTACAACAAGCCCAGCAAGCTGTTGTCTCCAGAGTACCAGTGGGATGACAAGAAGACCAAAACCAAAGAGGTCAAAGTAATTCGCTTCTCTTCTGTCGTTAAAAACTATGCTGAAATTCGTCCCAATGTATAGGACTAGGAATTGGATATTCGACCGACAGAAGAAAAACTTAATAGATTATGGTTAATGTTAGTTTAAGTTCAGGGGTTTGGGTTAATGTTAGGTTAAGTTCAGGTATAGCTCCACTGAGGTTTGGGTTAAGTTCAGGTATAGCGTTACTGAGGTTTGGGTTAATGTTAGGTTAAGTTCAGGTATAGCTTCACTGAGGTTTGGGTTAAGTTTACTGTAGGTTTAGTTCAGGTATAGCTTCACTGAGGTTTGGGTTAATGTTAGGTTAAGTTCAGGTTAAGTTCAGGGAAAGGTATAAAATGTCACATTGGATATACAGCTGTCCGGCCCCATTCATTTTGTGTTGGTGAAATATAGACACTGACATAAATGTACTAttttaaatgtactgtatatcagtCACTGTTGTAGTTTGGGGATAATAACGTTCTTCATTTATAGGAAATTAAATATTTTGTATTACCTTATTCATCCTGTATTCTGTAGCCTATCTACTGTATGTTGATTACTGGTAAAAACATCAATAAatataatg

Function

GO:

id name namespace
GO:0005975 carbohydrate metabolic process biological_process
GO:0016020 membrane cellular_component
GO:0016758 transferase activity, transferring hexosyl groups molecular_function

KEGG:

id description
K00709 ABO; histo-blood group ABO system transferase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1953502 lncRNA downstream 22974 9464331 ~ 9464609 (-) True G1705840
TU1953445 lncRNA downstream 77201 9349427 ~ 9410382 (-) True G1705790
TU1953416 lncRNA downstream 154818 9314264 ~ 9332765 (-) True G1705773
TU1953422 lncRNA downstream 161198 9325525 ~ 9326385 (-) True G1705778
TU1953424 lncRNA downstream 174328 9312258 ~ 9313255 (-) True G1705780
TU1953525 lncRNA upstream 7993 9516453 ~ 9516783 (-) True G1705858
TU1953526 lncRNA upstream 10198 9518658 ~ 9519756 (-) True G1705859
TU1953528 lncRNA upstream 12279 9520739 ~ 9521019 (-) True G1705861
TU1953617 lncRNA upstream 22852 9531312 ~ 9531605 (-) True G1705942
TU1953624 lncRNA upstream 32654 9541114 ~ 9541626 (-) True G1705946
XM_036956799.1 mRNA downstream 7067 9464081 ~ 9480516 (-) False LOC110515809
XM_036956800.1 mRNA downstream 7078 9464081 ~ 9480505 (-) False LOC110515809
XM_036956794.1 mRNA downstream 107708 9371753 ~ 9379875 (-) True LOC118936574
XM_036956793.1 mRNA downstream 108098 9371753 ~ 9379485 (-) False LOC118936574
XM_036956788.1 mRNA downstream 210435 9261999 ~ 9277148 (-) False LOC118942865
XM_036956807.1 mRNA upstream 234378 9742838 ~ 9791396 (-) True LOC110510472
XM_036956811.1 mRNA upstream 367215 9875675 ~ 9893829 (-) False LOC110490693
XM_036956810.1 mRNA upstream 367217 9875677 ~ 9893829 (-) False LOC110490693
XM_036956809.1 mRNA upstream 367219 9875679 ~ 9893829 (-) True LOC110490693
XM_036956813.1 mRNA upstream 402622 9911082 ~ 9926166 (-) False LOC118936576
TU1953431 other downstream 13229 9468623 ~ 9474354 (-) True LOC110515809
TU1953378 other downstream 210509 9274597 ~ 9277074 (-) True LOC118942865
TU1953186 other downstream 384428 9102418 ~ 9103155 (-) True LOC118942864
TU1953016 other downstream 678659 8806909 ~ 8808924 (-) True LOC118942856
TU1952861 other downstream 954780 8531735 ~ 8532803 (-) True G1705386
TU1953656 other upstream 133490 9641950 ~ 9642941 (-) True G1705975
TU1955083 other upstream 851964 10360424 ~ 10360975 (-) True G1706990
TU1955088 other upstream 859424 10367884 ~ 10368439 (-) True G1706993
TU1955159 other upstream 1022157 10530617 ~ 10531271 (-) True G1707057
TU1955302 other upstream 1312464 10820924 ~ 10897321 (-) True LOC110499727

Expression Profile