RNA id: XR_005038495.1


Basic Information

Item Value
RNA id XR_005038495.1
length 323
RNA type mRNA
GC content 0.48
exon number 3
gene id LOC118942867
representative False

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 9769444 ~ 9771487 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATATAACTGTTATAATCAGGTTACAACAGGCAATTACGCTCCAAAGCTGTTACGATAAGACAGTCAGAACGAGAAAATAATTTTCATGATTTCTGATCCGTTTGGTTGGTGGTTTCTGATCCGCAGTAAGGAGGTTTCTGATCCGCAGTGAGGAGGTTTCTGATCCGCAGTGAGGAGGTTTCTGATCCGCAGTGAGGAGGTTTCTGATCCGCAGTGAGGAGGTTTCTGATCCGCAGTGAGGAGGTTTCTGATCCGCAGTGAGGAGGTTTCTGATCCGCAGTGAGGAGGTTTCTGATCCGCAGTGAGGAGGTTTCTGATCCGCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1953732 lncRNA upstream 23448 9744675 ~ 9746142 (+) False G1706010
TU1953733 lncRNA upstream 23448 9744675 ~ 9746142 (+) True G1706010
TU1953725 lncRNA upstream 26101 9741898 ~ 9743489 (+) False G1706009
TU1953728 lncRNA upstream 26101 9742216 ~ 9743489 (+) True G1706009
TU1953594 lncRNA upstream 104252 9665059 ~ 9665338 (+) True G1705922
TU1953760 lncRNA downstream 5602 9775750 ~ 9776626 (+) True G1706027
TU1953768 lncRNA downstream 14175 9784323 ~ 9800209 (+) True G1706031
TU1953794 lncRNA downstream 45060 9815208 ~ 9816642 (+) True G1706051
TU1953796 lncRNA downstream 49743 9819891 ~ 9859095 (+) False G1706053
TU1953806 lncRNA downstream 54614 9824762 ~ 9826152 (+) True LOC118942868
XM_036956805.1 mRNA upstream 46604 9532104 ~ 9722986 (+) True LOC118942866
XM_036956795.1 mRNA upstream 356419 9402494 ~ 9413171 (+) False LOC118936575
XM_036956796.1 mRNA upstream 356419 9402494 ~ 9413171 (+) False LOC118936575
XM_036956798.1 mRNA upstream 356419 9402502 ~ 9413171 (+) True LOC118936575
XM_036958472.1 mRNA upstream 378548 9387717 ~ 9391042 (+) False LOC118943004
XM_036956808.1 mRNA downstream 54702 9824850 ~ 9864743 (+) False LOC118942868
XM_021594958.2 mRNA downstream 98254 9868402 ~ 9870589 (+) True LOC110516560
XR_005038521.1 mRNA downstream 210647 9980795 ~ 9981137 (+) True LOC118942870
XM_036958460.1 mRNA downstream 300328 10070476 ~ 10098024 (+) True LOC118942996
XM_021591905.2 mRNA downstream 551044 10321192 ~ 10323104 (+) True LOC110510583
TU1953737 other upstream 16117 9748185 ~ 9753473 (+) True G1706013
TU1953592 other upstream 109450 9659331 ~ 9660140 (+) True G1705920
TU1953589 other upstream 113872 9655298 ~ 9655718 (+) True G1705918
TU1952627 other upstream 678185 9075492 ~ 9091405 (+) False eps8a
TU1953859 other downstream 145565 9915713 ~ 9918019 (+) True G1706090
TU1953937 other downstream 364240 10134388 ~ 10135384 (+) True G1706152
TU1954537 other downstream 1339280 11109428 ~ 11116425 (+) False LOC110531908
TU1954621 other downstream 1500581 11270729 ~ 11272473 (+) True G1706652
TU1954697 other downstream 1627892 11398040 ~ 11399228 (+) False G1706711

Expression Profile