RNA id: XM_021594958.2


Basic Information

Item Value
RNA id XM_021594958.2
length 2188
RNA type mRNA
GC content 0.49
exon number 1
gene id LOC110516560
representative True

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 9868402 ~ 9870589 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGTTAACTAAGGAAGAATTTTTCAcgtctctcattgacttctcaagcCCTCAACACTGGCTTGTTCCCGGAAGTATCGCGATattgcgcctctgggtttagaaactctgtgctaAAAGCATATATCACTACCAAACCAGGGAagaaaaagaagagaggagagaaaggaaagcGAACGCGCAAATACATGCATACAATGATAGCAGAAATTGGTGCCGCCGACAATCCCAAGGCCAGCTCCAGCTATCCCCATCCCCAAGCAGCTGTGATCTGCCCGGACTCACCGGTTTCATTCGCCCCGGACTACGGAGTCGGACAGCTGTTCATACGTAGCGCCTCGTCCAGGAGGGACACACAGACGTCCGCGGGGAGTATCAACCCAGACGAGAGCTCCATCAAGCCGCTGGTATCCGGAGTATCCTCCGCTATTACAGACGCCTATATCATGACCTCTGAGGAATTCATGCAGACCGCTCCCTTGTTCGGCCAGAGGTCCAAGAGGAACGTTCTCTACAAGATCCTGTGTTTCCTCATTCTGATATTCCAAGGAGGCATTCTAGATTTCTACCTCATTATCTTCACGGATCTGTACTGGTGTTCGTGGATCGCCACGGATCTGGTGGTGATCTCTGGCTGGGGGATCTTCTTCATGAAGAACGCCAGGAGCAAGAGAGAGCGGGCGTGTGGGTTCCACCAAAAGAACTCTATATTCGGCTGTAACCTCGGCGAGTTTACCTACGCCTACCTGGCCTGGTTAATCTACGTGATCGCCTGCACCCCTAAAATAGTCCTCATTCTAGAGACTTCGATATTAGATCTCATCGCGCTCAAAGTTCCGTTCGGTGTAACCGGATTTAAGATTATCACGTTGCTCTCGGTCCCGTTACTCTACTGTCTCGTCAATTCTATCACCGAGGACCAGAACGGAGCTACGCGCCACCGGTCCCAAAGCTGCTTCATCACCACCTGTCTGGACCTCGCAGACTGTTTTACCCTGGTGGAGTTGTATCTGAAGAACGAGATACCGACGGTCTATTTAAAATACACGGTCATCTCGGTGTATTTCATCGCCCTGGGCGTCCCAGTGGTGTGGTTATACGAGTTGACAGCCTCCGAGATGCGCTGTCGCTGGGTCTGGGCTAGGTTCCTGGTCGGTGTGTTGGTCAACGCCCCACTTCTGGTGGTGCGGTGTTTCCAGGTGTATGTTCACGAGATGCCCGTCTCAGTGTTCATGTTCAAGAATATGTTCTTCCTGGCCTGTAAGTGTCTGGAGCTTATAGAACAGTGTTTCACAGTGCGGGGTGTCAGGAGGTTCGGTGAGGGAAGCAACCCGGCGCAGTTCTCTCACTGTGTCTCAGAGAACGATATGTGTCCCCATGGATATGTCAACACCCTGGCGGTTACCACGCAGTCATAGGCCCGGCTTGGATGTCACCCTGGCCGTCACTACCTAGACCTAAAACGGCCTGGATTTTATTTTATCCCCCTGGAGGGTGGAAGGCACATGAGTGATGCTGAAGGAAGAATTTTGAGGGACAGGGGTTACGCCCTTAAacggcaccctatgccctatatagtgcacctacttttgaccagggctaatAGGGTTCTGATCAAagggagtgcactatatagggaatagggtgccaatgaGGATGCACCACCCCACAGGTGTCAATCAACGACAGCCTTATTGACGATTTTGTCATTTATTCAGATGTGAACATTTGATGACAACAGGTGCTACAGAATCATTATGCATCAACTACACCTGCTTAAGATCTGGCCAACCTGGCAGACCTGGCCGACCTGGCAGACCTGGCCACTGGCCAACCTGGCAGACCTGGCCACTGGCCAACCTGGCAGACCTGGCAGACCTGGCCAACCTGGCAGACCTGGCCACTGGCCAACGATTGTCGTTTTGAAATGGGAGTCTTGGATATGGTGTCAATGTCGATGTAAAGTCATGTTTTACGTTGGTAGAGTCTTGTCTCTCAATCTGTGAAACTTCCAAATAGCATTTCCTAATCAATGAATAGATGGAAACCTTGTGGTAATATACCTGATTAGTGTGTAATTGCGGTATACGTAATGATTCTAATGTGTAATCATGTCCTCTCATTTCCTAAACTATTTTGGGGGGAATATTTCATGTTATCAATATAAATCAATTTATATTTCTTAAAGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1953797 lncRNA upstream 8628 9858682 ~ 9859774 (+) True G1706053
TU1953796 lncRNA upstream 9307 9819891 ~ 9859095 (+) False G1706053
TU1953819 lncRNA upstream 10760 9850537 ~ 9857642 (+) True G1706065
TU1953823 lncRNA upstream 11379 9856620 ~ 9857023 (+) True G1706069
TU1953812 lncRNA upstream 32607 9835259 ~ 9835795 (+) True G1706062
TU1953848 lncRNA downstream 17263 9887852 ~ 9888872 (+) True G1706082
TU1953855 lncRNA downstream 25759 9896348 ~ 9896604 (+) True G1706086
TU1953856 lncRNA downstream 36278 9906867 ~ 9907072 (+) True G1706087
TU1953864 lncRNA downstream 56757 9927346 ~ 9927550 (+) True G1706095
TU1953865 lncRNA downstream 60235 9930824 ~ 9931079 (+) True G1706096
XM_036956808.1 mRNA upstream 3659 9824850 ~ 9864743 (+) False LOC118942868
XR_005038495.1 mRNA upstream 98254 9769590 ~ 9770148 (+) False LOC118942867
XM_036956805.1 mRNA upstream 145416 9532104 ~ 9722986 (+) True LOC118942866
XM_036956795.1 mRNA upstream 455231 9402494 ~ 9413171 (+) False LOC118936575
XR_005038521.1 mRNA downstream 110206 9980795 ~ 9981137 (+) True LOC118942870
XM_036958460.1 mRNA downstream 199887 10070476 ~ 10098024 (+) True LOC118942996
XM_021591905.2 mRNA downstream 450603 10321192 ~ 10323104 (+) True LOC110510583
XM_036956822.1 mRNA downstream 652357 10522946 ~ 10698614 (+) False LOC110490805
XM_036956823.1 mRNA downstream 652357 10522946 ~ 10698614 (+) False LOC110490805
TU1953737 other upstream 114929 9748185 ~ 9753473 (+) True G1706013
TU1953592 other upstream 208262 9659331 ~ 9660140 (+) True G1705920
TU1953589 other upstream 212684 9655298 ~ 9655718 (+) True G1705918
TU1952632 other upstream 776997 9075492 ~ 9091405 (+) False eps8a
TU1953859 other downstream 45124 9915713 ~ 9918019 (+) True G1706090
TU1953937 other downstream 263799 10134388 ~ 10135384 (+) True G1706152
TU1954537 other downstream 1238839 11109428 ~ 11116425 (+) False LOC110531908
TU1954621 other downstream 1400140 11270729 ~ 11272473 (+) True G1706652
TU1954697 other downstream 1527451 11398040 ~ 11399228 (+) False G1706711

Expression Profile