RNA id: XR_005038516.1


Basic Information

Item Value
RNA id XR_005038516.1
length 2016
RNA type mRNA
GC content 0.52
exon number 13
gene id LOC118942869
representative False

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 9956905 ~ 10061152 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CCACGTCACAAGGCTGGGCGGGTCAGTTTCTATGCCGTCATATCCCCTGGGGGACCGGGAGCCAATAGCGTCGCTCGACAACCCGGAAGAAACAGCAGCCCGAAAAGAGCGCCTGGATTTCAATTTTAGAACAGATACGAAGACATTGACAGTTCTGATCTGAGGTCAGTGTCCGCCCCAGTAGACCATGAGTTTCTCCCCCACCCCCGTGGGCCCGCCCGGCAGCCGTAGTGtccaggagcagagagagaagtgggagaggaagagaaccCGTACAGTCAGGGCCCTGGTCCAAACTGAACAGAAATACTGTAAACAACTACAACTAGTCAACACGTACTTTGTGGAGATTCTGAAGGCCAAAGGCACCCTGAGGCAGGACATTAGAGAGAGCATCTTCAGTTCCATTCCATCCGTCTATTCAGTAAACCAGACGTTATTGGTCCGTCTGGAGAACGGGGACTTGGGCCGTGGATTTGATGACTTCTGTCCTCACCTCCACCACTACGTTACCTACGTAGACAACATCCAGAACGCCAGCAAGGTCCTGGCGCTCCAGGTAAAGAAGAACAAAGCCTTTAGAAGGTTTAAGAAGCTCCAGGAGTCCAGACCAGAGTTCCTCAACTGTAAACTAGAGGACCTCCTCCCACTGCCCATACAGCGCATCCAACAGTACAAACATTTCTTACGGGATCTGTCAGAGAACACGAGTCCAGATTACCCAGAGTTCCAACCGCTTTCAAGGTCGGTGAAGCTGATCTCTGAGGTATCCCAGCGTATCCAGGACAACGCCCGCAGCCATGACAACCACCTGCAGCTGCGGCGGGTGCAGAGACTGCTGAAGGGGAGAAAGACCAAGGTGGAAGCTCCAGGACGCTGGTACCTGCGTGAGGGCTGGCTGCGTACCGTCCCCCCTAAAGGAGCAGAGGTCAAACCCAAGATGTTCTTCCTGTTTAGTGATGTCCTTCTCCAAGCCAAGCCCTGCCACCCTCTCCATCCCACCAACGGAGATAAGTTTGCTGGCCAGAGAGTCTACCCACTGAAGGACTGTACTGTGGACAAGGTGTTTGGGCACACCCAGAGCCAGGGCGGCCTTCTCAGTtTGACCTTCCCTAAAGCCAAGCTGCTGCTGATGTCCAGCGATCAGGAAGATATCAACGACTGGTATTACAGCCTGAGCTCTGCTGTAGGTCAGTTAAAGTCCAGGAACACAGTGGTCCATCAGAGAGATGATCTGGTCAGGAGACCGCTACGCTGCTTTGTAGAGGACCAGAAGAACCAAACTACCCCcaccacaccacccaccacctccaccccagggaggaagaggatggcccccccctccaccccagaCCCCCTCCAGACCTACCGCTCCAGCAGAAGCAGAGGGCAGCGCCTCCAAGAGGATGAAGCTGACTGGGGGGCCAGCTGAGAGTGAATCGGCCAGGTCAAGCTGTGTGATCCTGTGAAGGACCAAGAACTTCAGAGATCCTTGCTCTTTCACACAAACCAATCAAGTCTGACAGATAAGCGTTAATGGGGGGGATATGAGGAGAGATTAGAGGTAGTTAGATACTGGAGAATCAGGTtaatggggagagatgggaggtagTTAGATACTGGAGAATCAGGTtaatggggagagatgggaggtagTTAGATACTGGAGAATTAGGTtaatggggagagatgggaggtagTTAGAtatgaggagagatgggaggtagTTAGATACTGGAGAATCAGGTtaatggggagagatgggaggtagTTAGATACTGGAGAATCAGGTtaatggggagagatgggaggtagTTAGATACTGGAGAATTAGGTtaatggggagagatgggaggtagTTAGAtatgaggagagatgggaggtagTTAGATGATATGAAATGTGAAGATTTTAACACTGATGCCAAAGACACTTTGAAACACCTTCACGATAGAAGCTCCAGCAGATGGAAAATGTGAGATTTGACTCTGAAATAAATGAATGTTTTGTCCTGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1954878 lncRNA downstream 1397 9955259 ~ 9955508 (-) True G1706832
TU1954871 lncRNA downstream 13292 9942872 ~ 9943613 (-) True G1706825
TU1954861 lncRNA downstream 29603 9927096 ~ 9927302 (-) True G1706816
TU1954860 lncRNA downstream 31702 9924545 ~ 9925203 (-) True G1706815
TU1954857 lncRNA downstream 37398 9919105 ~ 9919507 (-) True G1706814
TU1954943 lncRNA upstream 34688 10095840 ~ 10096698 (-) False G1706877
TU1954944 lncRNA upstream 34688 10095840 ~ 10142473 (-) True G1706877
TU1954963 lncRNA upstream 63375 10124527 ~ 10125255 (-) True G1706894
TU1954964 lncRNA upstream 64873 10126025 ~ 10126469 (-) True G1706895
TU1954966 lncRNA upstream 65360 10126512 ~ 10126916 (-) True G1706896
XM_036956813.1 mRNA downstream 30739 9911082 ~ 9926166 (-) False LOC118936576
XM_036956811.1 mRNA downstream 63076 9875675 ~ 9893829 (-) False LOC110490693
XM_036956810.1 mRNA downstream 63076 9875677 ~ 9893829 (-) False LOC110490693
XM_036956809.1 mRNA downstream 63076 9875679 ~ 9893829 (-) True LOC110490693
XM_036956807.1 mRNA downstream 165509 9742838 ~ 9791396 (-) True LOC110510472
XR_005038522.1 mRNA upstream 66918 10128070 ~ 10129253 (-) True LOC118942871
XM_036956818.1 mRNA upstream 73136 10134288 ~ 10402746 (-) False LOC110513868
XM_036956816.1 mRNA upstream 73139 10134291 ~ 10402745 (-) False LOC110513868
XM_036956820.1 mRNA upstream 73139 10134291 ~ 10402745 (-) False LOC110513868
XM_036956817.1 mRNA upstream 73142 10134294 ~ 10402744 (-) True LOC110513868
TU1953656 other downstream 313964 9641950 ~ 9642941 (-) True G1705975
TU1953431 other downstream 482551 9468623 ~ 9474354 (-) True LOC110515809
TU1953378 other downstream 679831 9274597 ~ 9277074 (-) True LOC118942865
TU1953186 other downstream 853750 9102418 ~ 9103155 (-) True LOC118942864
TU1953016 other downstream 1147981 8806909 ~ 8808924 (-) True LOC118942856
TU1955083 other upstream 299272 10360424 ~ 10360975 (-) True G1706990
TU1955088 other upstream 306732 10367884 ~ 10368439 (-) True G1706993
TU1955159 other upstream 469465 10530617 ~ 10531271 (-) True G1707057
TU1955302 other upstream 759772 10820924 ~ 10897321 (-) True LOC110499727
TU1955400 other upstream 903683 10964835 ~ 10997654 (-) False LOC110518048

Expression Profile