RNA id: XM_021591905.2


Basic Information

Item Value
RNA id XM_021591905.2
length 1913
RNA type mRNA
GC content 0.52
exon number 1
gene id LOC110510583
representative True

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 10321192 ~ 10323104 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TACAGAAAGGCCACGCCCACTAGTGTTTACAGAAAGGCCACACCCACTAGTGTTTGAAGAAAGGCCACACCCACTAGAGTGCTTACAGAAAGGCCACGCCCACTAGTGTTTACAGAAAGGCCACGCTCACTAGAGTGTTTACACCATGCCCACAGACAACGCCCACTAGAGTTAATGATTACACCTCTTCCTTTTAAACAGaggtgtgtgagaggtgtgtgtcaTTTATTTGAGCTGTGAGGTGCTGGTGAGACACATCTTTCTGTTGCCCAGCAGTGtgcaactcctcctcctcagctgTGGTGTTGGTAGATACTAATACCACAAAGGCAATACCACATACAGGGTTCTCCCAGGGATCTTTTTTTAACAAAGAGGTGCTACTGAGTACAGCGGGATGGAGGACATTTCCTGCAATCTAAAGCAAAGAAATACTCCATTTGGGTGTGGTAACAGGCCTTAAATgattataaataatgtttttttttaaatgacagtgGCGCAACCAGTCCACAAGGTGGCGTAGTGCAACTCTTACATTCTTTGAGGAGAACCCGGACATAGAGCGATAATACGGACTAGTCATGGCTTCTGTTCGGTTGTCCAGGTCTCAGAGATTCTTCAAGAACTTATCTCTGGTCCTCCTGAGTGGATCCGTCCCTCTGCTCCTGTGGGCCGCTCTCAGACGCCCGCCGGGCTCTGACAGGAGTCCTCTCCCCGTTCTGGACCTCCTGCCCCCGGACTACGCTGCCGACTTGCCGGCCTGCTCAGCCATCATCCAGGGAGACCTGGAGGGTCTGGAGAGGAAGCAGCTCAGCGTCCTGCTGAAGACCATGAAGAAACAGCAGCTGCTGTCAGAGGCCTTCTACCACAACGTGACTCAGGACTGTCAGAGGTACGTCACAGAAAGAGAGTTCATCACCGTTCCTCTCAGTCAGGAGGAGAAGGAGTTCCCCATCGCCTACTCCATGGTCATCCACGACAAGATTGAGATGTTTGAGCGGCTCCTGCGTGCCCTGTACACTCCTCAGAACGTGTACTGCGTCCACATCGACCAGAAGTCATCGGAGGCCTTCAGGACGGCAGTGAGGGCTATCGTGTCCTGTCTGACTAATGTGTTTGTGGCCAGTAAGTTAGAGAGTGTGGTATATGCCTCCTGGTCCAGAGTGCAGGCCGATCTGAACTGTATGGAGGATCTCCTGAAGTCACCTGTCCAGTGGAGGTACCTGATCAACACCTGTGGAACAGACTTCCCCATTAAGACCAACGCTGAGATGGTTCAGGCCCTCAAGCTGCAGAACGGGAGGAACAGCATGGAGTCAGAGACCACCGACGACTATAAAAACAGCAGATGGCAGTTTCACCACAAAATCACCAGCAACATGGTGGTCAAGACGAACGTTAGGAAGAGCCCTCCTCCAATCAGCACCCCCATGTTTTCTGGCAACGCCTACTTCCTGGTGTCCAGGGCCTTTGTCCGTCACGTGATGAAGTCTCAGGAGGTCCGGGCGCTGTTGGAGTGGGAGAAGGACACCTATAGTCCTGATGAACACCTGTGGGCCACCCTGCAGCGCATGCCCTCTGTGCCAGGCTCTAACCCTCCGCACATCAAGTACCATGAATCAGACATGAACGCCATTGCGCGCATTGTGAAGTGGCGTTCCCTGGAAGGAGATGTGAGGAACGGAGCCCCATATCCACCCTGCTCGGGTGTCTACAGGAGGTCCATTTGTGTCTACGGGGCTGGAGATCTCAGGTGGCTCCTACAACATCACCACCTCATCGCTAACAAGTTTGACCCTGAGGTGGATGATGTGGCTATCAGGTGTCTGGAGTCGTACCTGCGCTTCAAAGCCACAGACCGTGTTTCACGAAGGACAGTGGAATCTGAGAGGATCTTACAAAAACGATGA

Function

GO: NA

KEGG:

id description
K09662 GCNT3; N-acetylglucosaminyltransferase 3, mucin type

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1954018 lncRNA upstream 29175 10291103 ~ 10292017 (+) True G1706224
TU1953990 lncRNA upstream 88337 10231348 ~ 10232855 (+) True G1706198
TU1953922 lncRNA upstream 194415 10088310 ~ 10126777 (+) False G1706139
TU1953921 lncRNA upstream 194415 10126515 ~ 10126777 (+) True G1706139
TU1953936 lncRNA upstream 199633 10121250 ~ 10121559 (+) True G1706151
TU1954058 lncRNA downstream 63986 10387090 ~ 10387614 (+) True G1706252
TU1954103 lncRNA downstream 82970 10406074 ~ 10407348 (+) False G1706261
TU1954069 lncRNA downstream 83088 10406192 ~ 10407348 (+) False G1706261
TU1954070 lncRNA downstream 83088 10406192 ~ 10407348 (+) False G1706261
TU1954072 lncRNA downstream 83088 10406192 ~ 10407348 (+) False G1706261
XM_036958460.1 mRNA upstream 223168 10070476 ~ 10098024 (+) True LOC118942996
XR_005038521.1 mRNA upstream 340055 9980795 ~ 9981137 (+) True LOC118942870
XM_021594958.2 mRNA upstream 450603 9868402 ~ 9870589 (+) True LOC110516560
XM_036956808.1 mRNA upstream 456449 9824850 ~ 9864743 (+) False LOC118942868
XR_005038495.1 mRNA upstream 551044 9769590 ~ 9770148 (+) False LOC118942867
XM_036956822.1 mRNA downstream 199842 10522946 ~ 10698614 (+) False LOC110490805
XM_036956823.1 mRNA downstream 199842 10522946 ~ 10698614 (+) False LOC110490805
XM_036956824.1 mRNA downstream 199842 10522946 ~ 10698614 (+) False LOC110490805
XM_036956825.1 mRNA downstream 199842 10522946 ~ 10698614 (+) False LOC110490805
XM_036956826.1 mRNA downstream 199842 10522946 ~ 10698614 (+) False LOC110490805
TU1953937 other upstream 185808 10134388 ~ 10135384 (+) True G1706152
TU1953859 other upstream 403173 9915713 ~ 9918019 (+) True G1706090
TU1953737 other upstream 567719 9748185 ~ 9753473 (+) True G1706013
TU1953592 other upstream 661052 9659331 ~ 9660140 (+) True G1705920
TU1953589 other upstream 665474 9655298 ~ 9655718 (+) True G1705918
TU1954537 other downstream 786324 11109428 ~ 11116425 (+) False LOC110531908
TU1954621 other downstream 947625 11270729 ~ 11272473 (+) True G1706652
TU1954697 other downstream 1074936 11398040 ~ 11399228 (+) False G1706711
TU1954698 other downstream 1074936 11398040 ~ 11399228 (+) False G1706711
TU1954699 other downstream 1074936 11398040 ~ 11399288 (+) False G1706711

Expression Profile