RNA id: TU1954746


Basic Information

Item Value
RNA id TU1954746
length 1199
lncRNA type sense_over
GC content 0.46
exon number 2
gene id LOC118942872
representative False

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 10406178 ~ 10491072 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GGTGGCGTATGAACGaatgggttatagagcaaacaacacaacgTCACAACAGGTTATAATATGTCTTGTTTACCGGCTTCCTCTGTGATATTACCCACACACCACTACTGTATGGCATCGGGTCTCGCCTCAGTTACAACACTGTTGGTCTCTGTGTGTTCCAGCACGTAAGGACCTGAACAACGTGGCCAACCAGAGGAAGCTGGACATCATGAACAACGTGGCCACCGGCCTCGTCTTCATCACCGCCATCATCAACATCTTCATCACCGCATTTGGAGTGCAGAAGACTGGCCTGTACCCCAAAACCTAGGCTGAAGACTGGCCTGTACCCCAAAACCTAGACAGTAGACTGACCTGTACCCCACAACCTAGACAGAAGACTGACCTGTACCCCAAAACCTAGACAGTAGACTGGCCTGTACCCCAAAACCTAGACAGTAGACTGGCCTGTACCCCAAAACCTAGACAGTAGACTGGCCTGTACCCCAAAACCTAGACAGTAGACTGACCTGTACCCCTAAACCTAGACAGTAGACTGACCTGTACCCCAAAACCTAGACAGTAGACTGACCTGTACCCCAACACCTAGGCTGAAGACTGACCTGTACCCCAAAACCTAGACTGAAGACTGATCTGTACCCCAAAACCTAGACAGTAGACTGACCTGTACCCCAAAACCTAGACAGTAGACTGATCTGTACCCCAAAACCTAGACAGTAGACTGATCTGTACCCCAAAACCTAGACAGTAGACTGACCTGTACCCCAAAACCTAGACAGAAGACTGGCCTGTACCCCACAACCTAGACAGAAGACTGACCTGTACCCTAAAACCTAGACTGAAAACTGACCTGTACCCCACAACCTAGACAGTAGACTGACCTGTACCCTAAAAGCTAGAGTGATATACTTCAGCGATATATCTTTCAAAACGCGGCACTACGGGTTTACTATTGTAACTTTTTTTTATCAGAAGAGATTTGTAAAAGAAATCATTAATCATTTAAATGTCAAAAACTAGAATTGTCTTATTCTAATGTGTATGGCTCAGAAATCAAATTAAAGACAAGTGTTTGGGCTACAGATTAGTCTCTCTAGACAAACGGGTTGCCTCCCACAATTTAACAATGTTCAAGCATGTCCTTGGTCTGGGATTTCCAAGAATGGCTACAGACCATAGGGTCTTCAGATAATATA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1955094 lncRNA downstream 21122 10384741 ~ 10385158 (-) True G1706999
TU1955089 lncRNA downstream 36098 10369167 ~ 10370182 (-) True G1706994
TU1955076 lncRNA downstream 55492 10349660 ~ 10350788 (-) True G1706985
TU1955071 lncRNA downstream 65148 10340702 ~ 10341132 (-) True G1706981
TU1955070 lncRNA downstream 67328 10338466 ~ 10338952 (-) True G1706980
TU1955104 lncRNA upstream 559 10408068 ~ 10408488 (-) True G1707009
TU1955105 lncRNA upstream 983 10408492 ~ 10409335 (-) True G1707010
TU1954747 lncRNA upstream 81184 10488693 ~ 10491064 (-) True LOC118942872
TU1955130 lncRNA upstream 89164 10496673 ~ 10507408 (-) True G1707034
TU1955132 lncRNA upstream 90073 10497582 ~ 10498051 (-) True G1707036
XM_036956818.1 mRNA downstream 3534 10134288 ~ 10402746 (-) False LOC110513868
XM_036956816.1 mRNA downstream 3535 10134291 ~ 10402745 (-) False LOC110513868
XM_036956820.1 mRNA downstream 3535 10134291 ~ 10402745 (-) False LOC110513868
XM_036956817.1 mRNA downstream 3536 10134294 ~ 10402744 (-) True LOC110513868
XM_036958461.1 mRNA downstream 18704 10385482 ~ 10387576 (-) True LOC118942997
XM_036956844.1 mRNA upstream 389048 10796557 ~ 10897354 (-) False LOC110499727
XM_036956840.1 mRNA upstream 389048 10796557 ~ 10897355 (-) False LOC110499727
XM_036956841.1 mRNA upstream 389048 10796557 ~ 10897355 (-) False LOC110499727
XM_036956842.1 mRNA upstream 389048 10796557 ~ 10897355 (-) False LOC110499727
XM_036956843.1 mRNA upstream 389048 10796557 ~ 10897355 (-) False LOC110499727
TU1955088 other downstream 37841 10367884 ~ 10368439 (-) True G1706993
TU1955083 other downstream 45305 10360424 ~ 10360975 (-) True G1706990
TU1953656 other downstream 763339 9641950 ~ 9642941 (-) True G1705975
TU1953431 other downstream 931926 9468623 ~ 9474354 (-) True LOC110515809
TU1953378 other downstream 1129206 9274597 ~ 9277074 (-) True LOC118942865
TU1955159 other upstream 123108 10530617 ~ 10531271 (-) True G1707057
TU1955302 other upstream 413415 10820924 ~ 10897321 (-) True LOC110499727
TU1955400 other upstream 557326 10964835 ~ 10997654 (-) False LOC110518048
TU1955395 other upstream 557531 10965040 ~ 10997654 (-) False LOC110518048
TU1955453 other upstream 611517 11019026 ~ 11021038 (-) True G1707276

Expression Profile