RNA id: XR_005038523.1


Basic Information

Item Value
RNA id XR_005038523.1
length 1324
RNA type mRNA
GC content 0.41
exon number 3
gene id LOC118942873
representative False

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 10600988 ~ 10602420 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

cacacacacacatttattcatcatcatcagtgGAGCCAGATAAGCTGATAAACCAGCCTGCCTCTCCTCAGTACAGTTAATGTGGGCTGAGTGATATAACCATCAACAGTCCTGGTAGTACAGGTTCCCAGGCCACTTTCAGGATGTGTCGGAATGGCACTGTGTTCCTATATCGTGCACTGCTTTTGACTCcagtagtgctgagtgattaaccCTAAATCcagtttttaaacaactaatttgCCACAgttggttcaattatttgaattccattttgtttttttgttttttcttctgtgagctcaatgcacACATTGGGCTGcagtttctgtagagataaatGATCATGGACCAACAAGTTAATTTCCCAACCTgcgtagggagttgtagtttccaacaggccaatattctacatagtttagcgcagAAAATTGGAttattaactacaatgaccataattcaTTGCACGGCTACTTTTCCAGTTTATTTTACGCCTGCTatgtaagagacagaagaatgagcAATCAGGAGAGGATCCATAGAGAGCAGTTTCTTTGAGGTATTggtattttgttttttaccctcgctgattaaaataatcaactaatcatcacgctgtgtagtgttagggcaaataACTAAACGTGCACCTCTTGGGGTCCCGAGGCCCGAGTTTGGGGAAACTCTGCTTTATTTACATTGAACTACTAATAGTGATTTAGTCAGACTAGAGCTCTATAGAGGTGGTTtagtcagacagcagctctatagaggtGGTTtagtcagacagcagctctatagaggtGGTTTAGTCAGACTAGAGCTCTATAGAGGTGGTTtagtcagacagcagctctatagaggtGGTTtagtcagacagcagctctatagaggtGGTTTAGTCAGACTAGAGCTTTATAGAGGTGGTTTAGTCAGACTAGATCTCTATAGAGGGGGTTtagtcagacagcagctctatagaggtGGTTTAGTCAGACTAGAGCTCTATAGAGGTGGTTTAGTCAGACTAGAGCTCTATAGAGGTGGTTtagtcagacagcagctctatagagGTGGTTtagtcagacagcagctctatagaggtGGTTtagtcagacagcagctctatagaggtGGTTTAGTCAGACTAGAGCTCTATAGAGGTGGTTTAGTCAGACTAGAGCTCTATAGAGgtGGTTTAGTCAGTCTATAGAGGTGGTGTCTTGGAATTAAATAATATTAATCAAAAAAACGAATTTAataaaatccaattttattggccacatacacgtgtttagcagatgttattgcgggtgttgaaatg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1954239 lncRNA upstream 11296 10589105 ~ 10589692 (+) True G1706349
TU1954235 lncRNA upstream 13156 10585649 ~ 10587832 (+) True G1706346
TU1954177 lncRNA upstream 83898 10515881 ~ 10517090 (+) True G1706302
TU1954151 lncRNA upstream 142426 10450860 ~ 10458562 (+) False G1706278
TU1954150 lncRNA upstream 142426 10458066 ~ 10458562 (+) True G1706278
TU1954292 lncRNA downstream 76458 10678873 ~ 10679284 (+) True G1706391
TU1954294 lncRNA downstream 77661 10680076 ~ 10680817 (+) True G1706392
TU1954184 lncRNA downstream 93218 10695633 ~ 10699071 (+) True LOC110490805
TU1954185 lncRNA downstream 97376 10699791 ~ 10701153 (+) False G1706307
TU1954186 lncRNA downstream 97376 10699791 ~ 10701153 (+) False G1706307
XM_021591905.2 mRNA upstream 277884 10321192 ~ 10323104 (+) True LOC110510583
XM_036958460.1 mRNA upstream 502964 10070476 ~ 10098024 (+) True LOC118942996
XR_005038521.1 mRNA upstream 619851 9980795 ~ 9981137 (+) True LOC118942870
XM_021594958.2 mRNA upstream 730399 9868402 ~ 9870589 (+) True LOC110516560
XM_036956808.1 mRNA upstream 736245 9824850 ~ 9864743 (+) False LOC118942868
XM_036956837.1 mRNA downstream 128135 10730550 ~ 10791811 (+) False LOC110514895
XM_036956835.1 mRNA downstream 128137 10730552 ~ 10791811 (+) False LOC110514895
XM_036956839.1 mRNA downstream 128999 10731414 ~ 10791811 (+) False LOC110514895
XM_036956834.1 mRNA downstream 129002 10731417 ~ 10791811 (+) False LOC110514895
XM_036956836.1 mRNA downstream 129505 10731920 ~ 10791811 (+) False LOC110514895
TU1953937 other upstream 465604 10134388 ~ 10135384 (+) True G1706152
TU1953859 other upstream 682969 9915713 ~ 9918019 (+) True G1706090
TU1953737 other upstream 847515 9748185 ~ 9753473 (+) True G1706013
TU1953592 other upstream 940848 9659331 ~ 9660140 (+) True G1705920
TU1953589 other upstream 945270 9655298 ~ 9655718 (+) True G1705918
TU1954537 other downstream 507013 11109428 ~ 11116425 (+) False LOC110531908
TU1954621 other downstream 668314 11270729 ~ 11272473 (+) True G1706652
TU1954697 other downstream 795625 11398040 ~ 11399228 (+) False G1706711
TU1954698 other downstream 795625 11398040 ~ 11399228 (+) False G1706711
TU1954699 other downstream 795625 11398040 ~ 11399288 (+) False G1706711

Expression Profile