RNA id: XM_036956834.1


Basic Information

Item Value
RNA id XM_036956834.1
length 2171
RNA type mRNA
GC content 0.53
exon number 10
gene id LOC110514895
representative False

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 10730550 ~ 10791811 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTGGCACAGCTCCAGAACTCATAGCGTGGGACAGTCTCTCATTTAGCAGTTTCTCCATGCACTCTCAGCACAGACAGACCGGTGGAAATACTACGGtgcgcgcacaaacacacacactctagtctACACACATTCCACACACACTTGCAGACGCTTGTGTTACGCGGACTCGACTAGATACAGTAGCAGCTGACGCTGCGAACTCAAGTCAACAAGAGGAAACATCCACGAGTCGTGACATCCTCGGAGTCGGCTCCGTTTACACATCCGTACTCCACTGGCATACTCAGACAGACAAGGACCCTTTCGGGACAGCTTCAGTTTTACTGTCTACCTTTGCCAACTTTCTATAAACCAAGAAGGATTGAAACACAGATTTTGATATAATTTTTCAGTGCGTGTTGGAGCGCCTATATATTATCTTTGTGGCATGTTGTAGCGCACCGCCAGAGGAAGACAGCGACCATACACATGCTGGCTGGACACCGGTCCCTAGGTCAAGTTCAGTCTCTGACCCCCACCCCTCACCTTTGACCCCTCACCTCGGATGGAAGAACGCACCCATTCCTTTAGGAGGTTGAAGTTGATGAGTTCCCCCAGCCTCAGTGACCTGGGGAAGAGTGACAAGGCAGCgttggaggagagagggacacagcAGAGAAAAGCTGGGGCTAACGCCACCTGGAACAGcATCCACAATGCGGTGATAGCTGTGTTCCAGAGGAAAGACCTGGGAGAGAATGACCTCTACATCCTCAATGAGGGAGTCAGGCAACTACTGAAGACGGAGCTGGGCTCTTTCTTTACTGAATACCTCCAGAATCAGCTGCTGACAAAGGGAATGGTGATACTGAGGGACAAAATGCGTTTCTATGAAGGTCAGAAGCTATTGGACTCCTTGGCAGAGACGTGGGACTTCTTCTTCTGTGATGTTCTGTCCATGCTTCAGGCTATCTTCTACCCAGTACAGGGTAAGGAGCCATCGGTGCGGCAGCTGGCCCTGCTTCACTTCAGGAGCATTATCACTCTGAACATCAAGCTAGAGGACGCCCTGTCCCGCCCCCGCGCCCGTGTCCCCCCCTCTATCATACAGATGTTACTGATACTGCAGGGTGTCCATGAGTCTAGAGGAGTGACTGAGGAGTACCTGCGTCTGGAAGCTTTGGTTCAGAAGGTGGTGTCTCCATACCTGGGAACCCACGGCCTCTACTCCAACGACGGATCCTCAATGCAATACTCCTCCTGCGTACTGGAAAAGCGTCTGCAGCGGTGCTGGCCCAAGTCAGGCGACGCCCCCGTGAAGAACCTGGTGATGCGCTCCAAGTCCTACAACGTGCCCATGTTGACGCCTGTGGTGGAGTATGATACCGAGACAGGCTCCGTGAGCAGCATGGGCATCCGCCGCCATTCCGTCTGCGAGATGACTTCCTGTCTGGAAGAAGGCGCCATCAACGACATCAGCACCACTTCCTCCCTGGCCTCCGCGGCCCAGCCGGGCCTCTCCTCCCTGGAGCAGGAGCTCAGCCTGACAGGGGTTgtttgtggtggaggtggtggaagtCTGGATCTCTGTGGGTCTGTGGGGTCTGAGTCTTTAGGGTCCCACCTCCAGCCCTCCATCTTTCAGGGCTCTCACTCCCCAGGACCCTTCCTCCACGGCGGGGAGGAGTCGACGGTGTCCCCCTCTGTTCTGTGTCAGGTCCACTCTGGCTCAGAGACGGGGTCGATCCCCAGCTGTTCCTCCAGCCCGGAGACAGTGGTAGATCAGATACTGGACTCTATGGACTCTGACCCTGATGGCATCTTCATAGACTTCTCCCACCACAGCTGCTCAGACTCTTCATCCTCTGGTTACAGCAGGGAGAGTGGTAGACAGAGTGTGGTGTAATTTGGGGTTTTCTGGTAGCTAATCACAGGTGGATGATCTATGTGATTGCCTGCTTATTCACTACTGATTTCTGGAAAATCTGTGACTAGTGAGAAAGTGTCTGGAGATTTTCAGCCCTAGAGGTCTGATGAATCTCAAGGGATTATCACACGTACTGACACCATCTGTGCTCCACTCACACCGTCGTCTCTAAAAACACACCGCTCTTTCTAGGGCCTATTTTTCATGGAATATTTCTACAGTAAATTCCTTtttattaaaaatgtattttgcttGATTTTCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1954188 lncRNA upstream 30099 10699791 ~ 10701318 (+) False G1706307
TU1954185 lncRNA upstream 30264 10699791 ~ 10701153 (+) False G1706307
TU1954186 lncRNA upstream 30264 10699791 ~ 10701153 (+) False G1706307
TU1954189 lncRNA upstream 30264 10699791 ~ 10701153 (+) True G1706307
TU1954184 lncRNA upstream 32346 10695633 ~ 10699071 (+) True LOC110490805
TU1954313 lncRNA downstream 295 10792106 ~ 10793113 (+) True G1706404
TU1954369 lncRNA downstream 20958 10812769 ~ 10813262 (+) True G1706443
TU1954376 lncRNA downstream 24472 10816283 ~ 10817733 (+) True G1706447
TU1954435 lncRNA downstream 106207 10898018 ~ 10899271 (+) True G1706491
TU1954387 lncRNA downstream 112044 10903855 ~ 10905995 (+) True G1706454
XM_036956827.1 mRNA upstream 32803 10522946 ~ 10698614 (+) False LOC110490805
XR_005038526.1 mRNA downstream 2958 10794769 ~ 10796991 (+) True LOC110510616
XM_036956853.1 mRNA downstream 109038 10900849 ~ 10902569 (+) True LOC118942874
XR_005038527.1 mRNA downstream 311369 11103180 ~ 11138302 (+) False LOC110531908
XM_036956859.1 mRNA downstream 311378 11103189 ~ 11138813 (+) False LOC110531908
XR_005038528.1 mRNA downstream 320401 11112212 ~ 11112675 (+) True LOC118942875
TU1953937 other upstream 596033 10134388 ~ 10135384 (+) True G1706152
TU1953859 other upstream 813398 9915713 ~ 9918019 (+) True G1706090
TU1953737 other upstream 977944 9748185 ~ 9753473 (+) True G1706013
TU1953592 other upstream 1071277 9659331 ~ 9660140 (+) True G1705920
TU1953589 other upstream 1075699 9655298 ~ 9655718 (+) True G1705918
TU1954537 other downstream 317617 11109428 ~ 11116425 (+) False LOC110531908
TU1954621 other downstream 478918 11270729 ~ 11272473 (+) True G1706652
TU1954697 other downstream 606229 11398040 ~ 11399228 (+) False G1706711
TU1954698 other downstream 606229 11398040 ~ 11399228 (+) False G1706711
TU1954699 other downstream 606229 11398040 ~ 11399288 (+) False G1706711

Expression Profile