RNA id: XM_036956844.1


Basic Information

Item Value
RNA id XM_036956844.1
length 5301
RNA type mRNA
GC content 0.49
exon number 19
gene id LOC110499727
representative False

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 10796557 ~ 10897355 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TCACGTCGGCTTGATGCAAGACAAGCTGGATGTATTTATACAGTAAACGGATTGGAGgtcagggagagaaagggaaaataGATCACATCAAAATCAGCGAAACTGTGAATCGAAGACTATCATATAGATAACGTCCTAATATTCATAAAATCACCGGTCTGCAGCAACCGGAGTCAACGAGGATGCCAGGTGCCGCCTGGGGACTAGGTGTCGACCTCATATGTCATCACTACAGATCACTGTGATCTGATTCTCTAGCGTCAGTCTATCTACCTCTCAAAGCTCGGTTCTTAAGCCGCAAAGACATGGAAGCTGTGTGTTTTGAAGTGGAGGATCTGCTTTTGATGTCGTTGCcagCCTAAAATGCCCCAGCTGGTGACCTCTGACATGTAAATGGCGTCCAAAGTCAGAGATGCTGTGGTGTGGTACCAGAAGAAGATTGGTGCTTATGACCAACAGATATGGGAGAAGTCTGTTGAACAAAGAGAAATCAAGGGCCTGAGGAACAAGCCGAAGAAGACAGGCCATGTGAAAGCAGACCTCATTGATGTGGACCTAGTGAGAGgttcTGCTTTTGCCAAGGCCAAGCCTGAGTCTCCCTGGACGTCTCTGACCAGGAAGGGTCTCGTCAGGGTGGTGTTGTTCCCCTTCTTCTTCAGATGGTGGATCCAGGTCACCTCCAGagccatcttcctcctcctcctcctcctctacctgctTCAAGtggctGCTGCAGCGTTATTCTTCACCATTCCCCAGCCCCACAGTATCCCGACCACAGAGGTGTTTGGGGCGATATGGCTGATGCTGTTACTGGGGACAGTGCACTGCCAGATCGTCTCCACACGCACCCCCAAacccaccagcagcagcagctctgGCAAGAGAAGAAGGCGTCTAAGGAAGGCAGCTCACTTGGATGTACATAGGGAAGGAGATGGCTCTAGCACCACTGATAACACCCGGGAGGGCGGCCCACACTGCCACGGTGCCGCCACCGGCTCACCTTACAGCCTGTGCATCGCTCTCTTCCGAGATTTCTGGCATGATATCTGTAAAGCGCGgTCGAAGAAGTCCAAGCTGTCCATAGACAAGTCCACAGAGACAGATAATGGCTATGTGTCTCTGGACGGGAGGATAACCTGTAAGAGTAGTGAGGAGGGGCTACAGCTCCATGATGGAGGGTCTCACCACTGTGACCTGCTGCTGAGGTCAGACGAGACGTGTTGGGCCGCACCCCCGCCTCTCaacacactgctgctgcccccCGTCGCCAAGGTAAACAACAAGGAGACCCAGAGCCGTGGTGTGGGTGTGGAGAACATGTCTGATGAGGCGTCTAGTGAGGAGGATCCTGAAGCGTCCTACACCGCCATCCGTAGGGGCGTAGAGCGCGTCAGCAGCGACTGCACGCTGCGCAACAGGAAACCACATCACTACAAGAAACACTACGCCATCAACACTGAGGTGGGTGACCTCCACACTACCCAGgaGACTCCTAAGTCCGGTACCAGCTGTAGTTCTCGGTGCTCCAGCCTGCGGACCCAGGACTCAGAGAGCACCAGACACGAGTCAGAGACAGAGGACCTGCTGTGGGAGGACTTCCTGCACTGTGCTGAGTGTCGCTCCTCGTGTACCAGCGAGACAGAGGGCGAGGGAGCTGCAGTCTGCCCTGCTACCAAGAAGGAGTACAGAGATGACCCCTTTCACCAGTTGTGTCCTCTACAGGGTCATACGTGGCTACACAGCACCAACCCAGGTCTGGAGCGGGTCAGTGCCATCGTCTGGGAGGGGAACGACTGTAAGAAGGCTGACATGTCTGTCCTGGAGATCAGCGGTATGATCATGAACAGGGTCAACCTGTACACCCCAGGTATTGGCTACCAGGTCTTTGGTAACCTGGTGTCAGTGACTCTGGGCCTGACGCCCTTCGCCTACAGGCTGTCTCAGTACAAGGACCTGGAACAGCTGACACAGCTCTCAGCCAATGAGCTCATCTCTGTGGCGTTCGGCTCCTCCTCCGACGTCATGGTGATCACCATGGTAACGCTCAGCTTCATGGTGCGCGTCTGTCTCATCTGGCTCTTCTTCTTCCTGCTCAGCGTGGCCGAGAGGACAtacaaacagAGGCTGCTATTCGCCAAGCTGTTTGGTCACCTGACGTCAGCACGGCGAGCCAGGAAGTCGGAGGTGCCTCACTTCCGTCTGAAGAAAGTCCAGAACATTAAGATGTGGCTCTCTCTGCGCTCATATCTCAAGAGAAGGGGTCCTCAGCGGTCGGTGGATGTGATCGTGTCCTCTGccttcctcctcaccctctccgtAGTCTTCATCTGCTGTGCTCAGGTCAGCttgCTCCATATCCACCACACCTTCCTGGAGTGTCACTATAACTGGGAGCTGGTGATCTggtgttcctctctgtctctcttcctgctcCGCTTTGTTACCCTGGGCTCAGAGACCAGCAAGAAgtacagcaacacctccatctTACTGACAGAACAGATTAATCTGTACCTGAAGATGGAGAAGAAACCAAACAAGAAGGAGGATTTGACATTGGTCAACAACGTACTGAAGCTGGCCACCAAGCTATTGAAGGAGTTGGATGCTCCGTTCAGGCTGTATGGTCTGACGATGAACCCTCTGCTCTACAACATCACCCAGGTGGTCATCCTGTCTGCTGTGTCTGGGGTCATCAGTGACCTACTGGGCTTCAACCTGAAGCTCTGGAAGATCAAATCATGACAGTAAGCTGATCAGGTCACAGCTGGCTCTGGAAGATGTGATACATTCTCTCACCACACAGGGGCGCTGTTGTCCTTTCGCTCACGGACTGACTGGGCTTCCCTGTATCTATGGTCTGACGGACAAACAGCCCCATTCTCAGAGTTCATAACGGAGTGCTTACTTTTCACTGGTGCAATTCAAGATATATTTATTTTACCCTttcagtattttttatttttgttgttgttggaaaaagttacaaaatgttattttaattAAGCTATACAGGTTTTGTGTTCTCAGAGGGATGGGATCAAAACACAGCAAGATGACAATTCAGTTAAAAAGGTAAAAGAGTTCCATCCCTTCAGACTAGTAAGGACAATGTGCATTATAATGCAGCTGTTTAGTTTGTTGACTGTGACACACAAACGCAGTCATTTCACTGTGAGAACTGCAACGAGTTGTTGTTTCCGATCGTAGACGGACTGTAATAAATAATCATCATGTGTTTTAAAGcctcatacacacaaacaggTTGTACTTTCTGGTCAATTCAATGTaggctttttttgttgttgcttttgaCGACAACAACAGTACACCAAAGTTCAGAATAGACGAAcaatgtttctgtgtgtttggcgtTTCTAATGATAAGCTAAGTGACGGCTGTAGTGGAGAGATAGAGGCAGGataaaacacaacacatcactcaaATGATTGGTGAGAAAATAGGTGAGGTACTGTACTGGCTAGATgggaggtactgtactgtattggctAGATgggaggtactgtactgtattggctAGATGGGAGGTACTGTACTGGCTGGATGGGAGGTAATGTACTGTACCGGCTAGATGGGAGGTACTGTACTGGCTGGATGGGAGGTACTGTACTCTATTGGCTAGAAGAGGTACTGTACTGGCTAGATgggaggtactgtactgtattgccTAGATGGGAGGTACTGTACTGGCTAGATGGGAGGTACTGTACTGGCTAGATGGGAGGTACTGTACTGGCTAGATGGGAGGTACTGTACTGGCTAGATGGGAGGTACTGTACTGGCTAGATGGGAGGTACTGTACTGGCTAGATGTGAGGTACTGTACTGGCTGGATGGGAGGTACTGTACTGGCTGGATGGGAGGTACTGTACTGGCTGGATGGGAGGTACTATACTGGCTAGATggggtgtactgtactgtattggctAGACGGGAGGTACTGTACTGGCTGGATGGGAGGTACTATACTGGCTAGATGggtggactgtactgtactggctaGATGGGAGGTACTGTATTGGCTAGAAgggatgtactgtactgtactgggtggATGGGATGTACTGTACTGGCTAGATgggaggtactgtactgtattggctAGAAGGgatgtacagtactatactgggtgGATGGGAGGTACTGTACTGGGTGGATGGGAATATGTAAACCTAGCCAACATATCTGGGTTAGTATTCTGTATGTCAAATTGAGACATCCAGGCCCGCTAGCCCAAACTAAACGATGTGTGACTGAACATGGGTAACTGTGTTACTCGTATAATGATCATTTTGGGGGGGTGCTTATGTTTGTCCTGGTACACACTTGTACAAGTCTGTAATGGAATGTGTTTCTTACATACTGAGACCCTGAGGGAGTGGGGTCGCGACCTTTTATGGTGATACCATTCAGTATTGGCTTCTGTACTCCCAACCCTATTTTGAAAAACCAGACGCAGTGACGTGTGCAGTCTGGCTGAAATACTGCTATTCAGGCCTGTGAGCCGTCATCACAACCTCGTCAACATGTtgctttttctcgccctccttcCCTTGTTTCCTGTTTTACGTTGCATGGTTTTCTCACGGAGCATTTGAGTTATTTCAGTGGTTAGACTGTATGTCAAGCAATAACTCGTAGCTCAACACGCAACGTGTTTGTATTATAGTTGGAACAAAGAGGTCCCAGGTCTTAGTCGCTGTTCACACAGTCGATGTTCGTCGCTACATTTCAGAATGCCTGAAAAGGTGCCCTTTAAAGTAGTGTATAGAAACAATGTCACACACAAACCGTTGTAGTTGTTATTGCTTGGTACTTGTTGGCGTGGCTCAGTCTGTGTGAAGATGACCAAAGTGCTTTTTATTTGCTGGATAAAGCTGTATTATTaacacaaaataactgtttgGGTTTCATATTATTGGAAATGCTTTAAAGAAAACATGGTGTTGCCTCATCTtttcctttgttgttgttgttgttcctcgTGTTTTGTGGTTGCGAGAGAAAAGACAGTCACTTGAGTCTGAAAAAATGTCTTTAGAAAATGACTCTGAACCTGTCTGCCATCCTGATCCCTAGTgcaccagagccctggtcaaaagtagtgcactacgtagggaatagggtgacgtTTTTGCGTTGTGATTCCGTTTTCAAAAGGAAGTCTGCATATTTATGTTGAAGAGAAGAAAAACTACTTTTAGTGAGCTGGTCTGTTTCCTCAGTTCTAGGTGTTTATAAGGAAAATAAAAATGGACATTGTTGTGTCACTCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1955335 lncRNA downstream 8303 10787198 ~ 10788254 (-) True G1707188
TU1955322 lncRNA downstream 27251 10768745 ~ 10769306 (-) True G1707180
TU1955225 lncRNA downstream 40955 10648018 ~ 10755602 (-) True G1707120
TU1955237 lncRNA downstream 131962 10664117 ~ 10664595 (-) True G1707132
TU1955153 lncRNA downstream 273879 10522316 ~ 10522678 (-) True G1707051
TU1955440 lncRNA upstream 85247 10982601 ~ 10983012 (-) True G1707267
TU1955393 lncRNA upstream 92050 10989404 ~ 10997654 (-) False LOC110518048
TU1955464 lncRNA upstream 136955 11034309 ~ 11038811 (-) False G1707283
TU1955460 lncRNA upstream 140603 11037957 ~ 11038811 (-) False G1707283
TU1955463 lncRNA upstream 141136 11038490 ~ 11038811 (-) True G1707283
XM_036956821.1 mRNA downstream 305485 10406178 ~ 10491072 (-) False LOC118942872
XM_036956818.1 mRNA downstream 393811 10134288 ~ 10402746 (-) False LOC110513868
XM_036956816.1 mRNA downstream 393812 10134291 ~ 10402745 (-) False LOC110513868
XM_036956820.1 mRNA downstream 393812 10134291 ~ 10402745 (-) False LOC110513868
XM_036956817.1 mRNA downstream 393813 10134294 ~ 10402744 (-) True LOC110513868
XM_036956858.1 mRNA upstream 6499 10903853 ~ 11041613 (-) False LOC110518048
XM_036956854.1 mRNA upstream 6499 10903853 ~ 11086469 (-) False LOC110518048
XM_036956855.1 mRNA upstream 6499 10903853 ~ 11086469 (-) False LOC110518048
XM_036956856.1 mRNA upstream 6499 10903853 ~ 11086469 (-) False LOC110518048
XM_036956857.1 mRNA upstream 6499 10903853 ~ 11086469 (-) False LOC110518048
TU1955159 other downstream 265286 10530617 ~ 10531271 (-) True G1707057
TU1955088 other downstream 428118 10367884 ~ 10368439 (-) True G1706993
TU1955083 other downstream 435582 10360424 ~ 10360975 (-) True G1706990
TU1953656 other downstream 1153616 9641950 ~ 9642941 (-) True G1705975
TU1953431 other downstream 1322203 9468623 ~ 9474354 (-) True LOC110515809
TU1955400 other upstream 67481 10964835 ~ 10997654 (-) False LOC110518048
TU1955395 other upstream 67686 10965040 ~ 10997654 (-) False LOC110518048
TU1955453 other upstream 121672 11019026 ~ 11021038 (-) True G1707276
TU1955511 other upstream 232861 11130215 ~ 11133790 (-) True G1707317
TU1955507 other upstream 275656 11173010 ~ 11173890 (-) True LOC110531911

Expression Profile