RNA id: TU1955395


Basic Information

Item Value
RNA id TU1955395
length 960
RNA type TUCP
GC content 0.53
exon number 3
gene id LOC110518048
representative False

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 10903853 ~ 11086469 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GAGCTTCATTCACTTTGGTGCAGCGACCAAAAGCCCGCTCGTCAAATCTAAAGAACCGAAACTAGCGTCGGACACCCGGCCGCAGTCTTCCCGGGACATTCACCCGCCGCCGCCCAAGCGAGTCCGAAACGACGAGAAGAGCCTTAAACCTAAGAAACTAAATGGGGAAGGAGGTGCAGGGGGAGGTGGCGGCGCAGTGGAGAAGCAGCACCAGAAGCAGAGTTCAGGCAACCCGACAACATGGAGCTTCAGCCCCGTCAAGGCGAGCAGCAACCCCTCGGCGCCCCTCCAGCCTCCCATTCACACAGTGTTCAAGCAGAGCGCTTTCCTCGCCTCCCATACCAAACCACCATCCAAAAAGCCCAAGGAAaaacgagagaaagagaaggatttCAAGGAAAAGAAGAAAGATAAACCAATCCATGGTACTCCTGGAAATATTAGCAGCAGTCTGAGTAACGTCACTACTGTAATGAAGAAGGAGAACGGGGAGATGAAGTTGTTGCTAAAAGaCCACACCAGTAAGGACAAGACGAAGAAGCAGAAGAAACACAAAGTGATGAATGAGATCAAGAGGGAGAACGGAGAGGTGAAGCTCCTTCAGAAAGacaagCAGAAACCCCAGATAAACTCAGAGGAGCTCCAGATTAAAaaggtgaagaagaagaagaagaagaaacacaaagagagtgagagggagaagtGGAAACGTCCCAAGATGTACAACAGGTCCAGCCAGACCGTGTGtgctggtctcctctctgagCTCCATGCAGGCCTGGTCTCCAAACAacagccccaccaccaccacggccACACAGAGTTCAAACCCCCGCTCCccgtccaccaccaccacacctccaccacctcaTCCATCAAACAGGAGAACTGCTACAGCCCCTCTCCAACTCTGTCCCTCTCCAAGCCCCTATGGAGCAGCAGcaatagcagtagcagtag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1955361 lncRNA downstream 117048 10847059 ~ 10847992 (-) True G1707210
TU1955353 lncRNA downstream 122403 10841573 ~ 10842637 (-) True G1707203
TU1955335 lncRNA downstream 176786 10787198 ~ 10788254 (-) True G1707188
TU1955322 lncRNA downstream 195734 10768745 ~ 10769306 (-) True G1707180
TU1955237 lncRNA downstream 300445 10664117 ~ 10664595 (-) True G1707132
TU1955464 lncRNA upstream 36655 11034309 ~ 11038811 (-) False G1707283
TU1955460 lncRNA upstream 40303 11037957 ~ 11038811 (-) False G1707283
TU1955463 lncRNA upstream 40836 11038490 ~ 11038811 (-) True G1707283
TU1955426 lncRNA upstream 56954 11054608 ~ 11086419 (-) True LOC110518048
TU1955476 lncRNA upstream 68634 11066288 ~ 11066930 (-) False G1707294
XM_036956849.1 mRNA downstream 67685 10796557 ~ 10897355 (-) False LOC110499727
XM_036956860.1 mRNA upstream 142516 11140170 ~ 11207072 (-) False LOC110531911
XM_036956861.1 mRNA upstream 142516 11140170 ~ 11207072 (-) False LOC110531911
XM_036956862.1 mRNA upstream 142516 11140170 ~ 11207072 (-) False LOC110531911
XM_036956864.1 mRNA upstream 216550 11214204 ~ 11235532 (-) True LOC110531893
XR_005038529.1 mRNA upstream 269729 11267383 ~ 11269567 (-) True LOC118942877
TU1955302 other downstream 67719 10820924 ~ 10897321 (-) True LOC110499727
TU1955159 other downstream 433769 10530617 ~ 10531271 (-) True G1707057
TU1955088 other downstream 596601 10367884 ~ 10368439 (-) True G1706993
TU1955083 other downstream 604065 10360424 ~ 10360975 (-) True G1706990
TU1953656 other downstream 1322099 9641950 ~ 9642941 (-) True G1705975
TU1955453 other upstream 21372 11019026 ~ 11021038 (-) True G1707276
TU1955511 other upstream 132561 11130215 ~ 11133790 (-) True G1707317
TU1955507 other upstream 175356 11173010 ~ 11173890 (-) True LOC110531911
TU1955631 other upstream 277688 11275342 ~ 11275736 (-) False LOC110515612
TU1955632 other upstream 285566 11283220 ~ 11283782 (-) True LOC110515612

Expression Profile