RNA id: TU1954541


Basic Information

Item Value
RNA id TU1954541
length 796
lncRNA type sense_over
GC content 0.46
exon number 2
gene id LOC110531908
representative False

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 11103180 ~ 11138813 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TCAAGGGAAGTGATTCCCTTTCAAATCACGCCTTCTGCTTTGTTTTCGGGGCGTAAAACACTGCTTAAACGGCTACTGGACTATCATCACAACGTTATTTACAACTATCACATGATGCTGCATTGTATGTCAAGTTGTAACTTCAGGCTATAGGGATGTCGTCTTCCGGATAGTGTGAAATCGCGGAGGCTCTAATTGAAGGCATTTCTTCATAAGTTGTTTGATGCATAATAGACGTGGAAATCAGTAAGTTGTGGAGGAAGGCAACCGCACACATGTTGCAACTAAGCGCAACTTTCGATTTGCAGCAGGATGTGGTGTCAAGTATATTTAAGAAAGAGGCGACTGTAGGAATAATCAAAGAATACTCAGGGATCGTTGACACTCGGATCCTCAACATTGAAAGGGATGGAGGAGTCCTCTACTCCTGGAAAGTAAGTGGACACTGGGCAAGGGGCATTCACATAGCATTATAATGGGTATGTCAAGCGTGACGTTCCACACATAACCAACAGTGTGCTCTTCGGGATTGTTGTGGGAACATTCTCTCTGTCTAGGGTGcatcccaatggcaccctataccctatagtGCAGcatcccaatggcaccctattccctatagtgcagcatcccaatggcaccctataccctatagtGCAGcatcccaatggcaccctattccctatagtgcagcatcccaatggcaccctattccctatagtgcactacttttgaccagggcccatggggatcTGGGACGTAGGCTCCAAATAGAAGCCCAAAGACTCATGACAGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1954501 lncRNA upstream 64540 11036253 ~ 11038813 (+) False G1706544
TU1954500 lncRNA upstream 64540 11038141 ~ 11038813 (+) True G1706544
TU1954497 lncRNA upstream 65991 11036421 ~ 11037362 (+) True G1706543
TU1954494 lncRNA upstream 74931 11027798 ~ 11028422 (+) True G1706541
TU1954487 lncRNA upstream 81476 11021198 ~ 11021877 (+) True G1706534
TU1954548 lncRNA downstream 6534 11110821 ~ 11113348 (+) True G1706588
TU1954549 lncRNA downstream 9387 11113674 ~ 11114465 (+) True G1706589
TU1954544 lncRNA downstream 12529 11116816 ~ 11122980 (+) True LOC110531908
TU1954550 lncRNA downstream 13652 11117939 ~ 11118387 (+) True G1706590
TU1954566 lncRNA downstream 65456 11169743 ~ 11170016 (+) True G1706605
XM_036956853.1 mRNA upstream 200784 10900849 ~ 10902569 (+) True LOC118942874
XR_005038526.1 mRNA upstream 306362 10794769 ~ 10796991 (+) True LOC110510616
XM_036956836.1 mRNA upstream 311542 10731920 ~ 10791811 (+) False LOC110514895
XR_005038528.1 mRNA downstream 7925 11112212 ~ 11112675 (+) True LOC118942875
XM_036956863.1 mRNA downstream 90258 11194545 ~ 11200949 (+) True LOC118942876
XM_036956867.1 mRNA downstream 206903 11311190 ~ 11316722 (+) True LOC110499797
XM_036956866.1 mRNA downstream 237349 11341636 ~ 11354995 (+) True LOC110499792
XM_036956871.1 mRNA downstream 251711 11355998 ~ 11359023 (+) True LOC110518478
TU1953937 other upstream 967969 10134388 ~ 10135384 (+) True G1706152
TU1953859 other upstream 1185334 9915713 ~ 9918019 (+) True G1706090
TU1953737 other upstream 1349880 9748185 ~ 9753473 (+) True G1706013
TU1953592 other upstream 1443213 9659331 ~ 9660140 (+) True G1705920
TU1953589 other upstream 1447635 9655298 ~ 9655718 (+) True G1705918
TU1954537 other downstream 5141 11109428 ~ 11116425 (+) False LOC110531908
TU1954621 other downstream 166442 11270729 ~ 11272473 (+) True G1706652
TU1954697 other downstream 293753 11398040 ~ 11399228 (+) False G1706711
TU1954698 other downstream 293753 11398040 ~ 11399228 (+) False G1706711
TU1954699 other downstream 293753 11398040 ~ 11399288 (+) False G1706711

Expression Profile