RNA id: TU1954544


Basic Information

Item Value
RNA id TU1954544
length 2133
lncRNA type sense_over
GC content 0.42
exon number 7
gene id LOC110531908
representative True

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 11103180 ~ 11138813 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AAAGAATGCATATCTAATGAATTAAACGAAGAAGAGTTGTGTTGAAAGCCAGGAGTCTCCAGGGTTATTGGGAAGAGCTGCAGTGGAGCACAGAAAAGATGAAGTACTTTGAGGCGGTTCCAAACCCACGATACAGAGCATCTCAGAACCTGCCAGACTGGACCAAGCTGCTAGCTACCCTGAAGTCAAAGAACAAGAAGGCTTCTAACTATCTACGTCACATTGAGGAGAACACTAAACAGTAGGTGGAGAACCGAAGAGCGAAGGGTCTCTTGTGTGTTGCagaatgttgtgtgtgttggaggaAGTGTGTTGGTGGGGTACAGGGGGAACTTGACTATTGAAAGCACAGAGAGACAAACTCACTGGGATCAAGGACATTGATAGATATTAACACAGGGATCAATGACACTGATAGATATTAACACAGGGATCAATAACACTGATAGATATTAACACAGGGATCAATAACACTGATAGATATTAACACAGGGATCAATAACACTGATAGATATTAACACAGGGATCAATAACACTGATAGATATTAACACAGGGATCAATAACACTGATAGATAAtaacactcaaacacacagacacatagagatactgtatacacacagacacgtagagatactgtatacacacagacacgtagagatactgtatacacacagacacagtttcCACTTAAAAGTCAAGTAAGTCATATCATCTGATATTTCCTCTGTTATTTTCAGAGTTCTGTCGATGGTGGACAGCTGGAATCTTGGTAAGATGCCACATTCTAAAAGCCACTATCCATTAATAGAAGGATTGTAAGAAACCTTGTCTCTAGGATTGTGAGAAACCTTGTCTCTAGGATTGTGAGAAACCTTGTCTCTAGGATTGTAAGAAACCTTGTCTCTAGGATTGTGAGAAACCTTGTCTCTAGGATTGTGAGAAACCTTGTCTCTAGGATTGTGAGAAACCTTGTCTCTCTAGGATTGTAAGAAACCTTGTCTCTAGGATTGTGAGAAACCTTGTCTCTAGGATTGTAAGAAACCTTGTCTCTCTAGGATTGTGAGAAACCTTGTCTCTAGGATTGTGAGAAACCTTGTCTCTAGGATTGTGAGAAACCTTGTCTCTCTAGGATTGTGAGAAACCTTGTCTCTCTAGGATTGTGAGAAACCTTGTCTCTAGGATTGTGAGAAACCTTGTCTCTCTAGGATTGTGAGAAACCTTGTCTCTAGGATTGTGAGAAACCTTGTCTCTCTAGGATTGTGAGAAACCTTGTCTCTAGGATTGTGAGAAACCTTGTCTCTCTAGGATTGTAAGAAACCTTGTCTCTAGGATTGTGAGAAACCTTGTCTCTAGGATTGTGAGAAACCTTGTCTCTAGGATTGTGAGAAACCTTGTCTCTAGGATTGTGAGAAACCTTGCCTCTCTAGACCTTGATATTGGTCCTTTGGCTATGAAGCTGTTATTGTGATTATTATACCTAGAATAACACTGGTATATTAAGATGCTGGCAGGTCAGTTAACGTGAGCTCATTTAACCTTGACTACAGATAGGAAATGTATTCTGCTTCAGTTAAAGAAATCCCCCAACTTGAGTTTCAGGGTCACATACTTGAGTCCACTGGAGAACATCGCTCTCGGAGCCCACAGTTGTTGATGATTTAtcattcagggagagagagagaaaagaggggaagaATGCCACATGGTTATATAAGAATGGGAGGAGAAGGGTGTCTCTCTCACTtgctttccttctttctccctgtcttttttctcctctccttcactgctTCCTGACCCTAGTCCAAATGTTGCTCAACCACGAGATTGGACATCGCTCTACCTCAACCTCACATGGGCCACGCACGGACAATACACAACCtcactctctgtcacacacacactgctctctcgctcttgctctgtctcactctctctctgtctctctgtctgtctctcacccgTACACACTCTCTCCCATACTGACCACCATTCATCATTCTCCACACCAATATCCCGACTCACAGAAACGACCCTCTGCAAGTTGACTTTTTCCTCTCCCCCCTTCATTGTCCTTGTCATCTTCTCTGACTGTATTGTTTCAGTTTATCCATGGAGATGTCCCTCTGTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1954549 lncRNA upstream 2351 11113674 ~ 11114465 (+) True G1706589
TU1954548 lncRNA upstream 3468 11110821 ~ 11113348 (+) True G1706588
TU1954541 lncRNA upstream 12529 11103353 ~ 11104287 (+) False LOC110531908
TU1954501 lncRNA upstream 78003 11036253 ~ 11038813 (+) False G1706544
TU1954566 lncRNA downstream 46763 11169743 ~ 11170016 (+) True G1706605
TU1954584 lncRNA downstream 62299 11185279 ~ 11186324 (+) True G1706615
TU1954593 lncRNA downstream 94028 11217008 ~ 11217387 (+) True G1706624
TU1954618 lncRNA downstream 138077 11261057 ~ 11261272 (+) True G1706649
TU1954622 lncRNA downstream 151966 11274946 ~ 11275779 (+) True G1706653
XR_005038528.1 mRNA upstream 4141 11112212 ~ 11112675 (+) True LOC118942875
XM_036956853.1 mRNA upstream 214247 10900849 ~ 10902569 (+) True LOC118942874
XR_005038526.1 mRNA upstream 319825 10794769 ~ 10796991 (+) True LOC110510616
XM_036956833.1 mRNA upstream 325005 10748053 ~ 10791811 (+) False LOC110514895
XM_036956863.1 mRNA downstream 71565 11194545 ~ 11200949 (+) True LOC118942876
XM_036956867.1 mRNA downstream 188210 11311190 ~ 11316722 (+) True LOC110499797
XM_036956866.1 mRNA downstream 218656 11341636 ~ 11354995 (+) True LOC110499792
XM_036956871.1 mRNA downstream 233018 11355998 ~ 11359023 (+) True LOC110518478
XM_021564084.2 mRNA downstream 287471 11410451 ~ 11414636 (+) False LOC110490628
TU1954537 other upstream 391 11109428 ~ 11116425 (+) False LOC110531908
TU1953937 other upstream 981432 10134388 ~ 10135384 (+) True G1706152
TU1953859 other upstream 1198797 9915713 ~ 9918019 (+) True G1706090
TU1953737 other upstream 1363343 9748185 ~ 9753473 (+) True G1706013
TU1953592 other upstream 1456676 9659331 ~ 9660140 (+) True G1705920
TU1954621 other downstream 147749 11270729 ~ 11272473 (+) True G1706652
TU1954697 other downstream 275060 11398040 ~ 11399228 (+) False G1706711
TU1954698 other downstream 275060 11398040 ~ 11399228 (+) False G1706711
TU1954699 other downstream 275060 11398040 ~ 11399288 (+) False G1706711
TU1954701 other downstream 275060 11398040 ~ 11399228 (+) False G1706711

Expression Profile