RNA id: XM_036956863.1


Basic Information

Item Value
RNA id XM_036956863.1
length 2423
RNA type mRNA
GC content 0.50
exon number 3
gene id LOC118942876
representative True

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 11194545 ~ 11200949 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTCACTCTCCTGCAGGCTGCTCTCTCAcgctgctctcgctctctctgactgCGTAGctgagaaacacacactcactcactcactcactgacacgcacacacactcagtcaaaaCACACACCATGAGGCTGTTCGTGCTGTGTGTTGTGGCCTCCACCACTCTTCTGCTGGCAGTCCCATGGAGCTCCGCAGCAGAGCCAGGAGACAGAGCCCAGAGATGGGATAAGGTTCAGGATAAGGCTGCTACAGGAGAGGTTTCAGGGGGCTGCAATGTGAGGATGAAGCCTTCTGGCCAGTGTGGAGAAGAGGACGACTGCCCCTACCAGATCACCCTGCCTCCACTGACCATCCAGCTGCCCAAGCAGTTCAGGATGCTGGAGAAGACCATGAAGGAGCTGCAGAGCCTGAAGGAGACAGTGAACCGGCTGAAGAGGGACTGTCAGGAGTGCCGGCAGCAGGCTGACCAGAGCCTGCAGAGGGACAGCGGGGAGGCAGCAGGGGGTCCCGCTACGGGACCAGGGTTTCTGGAAATACAGTCTAGCACCAGTAAGGAGGAACGAGGAGACGGGGGAACCAACACAGGGCCTGATGGGGATGGCATTGGCACCGGTTCTGGTACTGGCAAAGGCACCGTCTCTACCGGCGGTTCTGTGTTTGAGATGCAGGTGAAGATGAACAAGATGTCCAACAGCCTGCGTAACGCACGGGGACAGATCACGGCTCTGCAGGGCCGTCTAGAGGAACTAAGCCTGATCAACATGAGGAACGTGGAGGCCATCGTGGACAGCAAGGTGGAGAACATCACTGGAGTGATCAACAAGCTCAGTAACAACTGTAACCACCAGTGTGCCGTCCAGCCCTCTCCTCAGTTCATCATCGCTCCCAAGGACTGCTCTGACTACAACATGctaaaggagaggaggaacggCGTCTACCAGGTCACGCCAGACCCCAGGAACGGCACGTTCCAGGTCTACTGCGACATGGAGTCGTTCGGCGGCGGCTGGACCCTGGTGCAGCAGCGCCTCAATGGCACCGTCAGCTTCAACCGCTCCTGGGCTGAGTACAAGggggGATTTGGTGACCCCCGGGGAGAGTTCTGGTTGGGCAACGACCGCATCCACCTCCTGACCAAGGCCAAGGACATGGTTCTGCGCATCGAACTGGAGGACTTCCAAGGGGTGCGGGAGTATGCCAAGTTCGACCAGTTCTACGTAGCCAACGAATTCCTGAGGTATCGCCTCTCCATCAGCGGGTACAGTGGCACGGCCGGCAACGCGCTGCACATGAACCAGCACTTCAACCACGACCAGAAGTTCTTCACCACGCCAGACAGGGACAACGACATGTACCCGTCAGGGAACTGCGGCGCGTACTACAGCTCTGGCTGGTGGTTTGACGCCTGCATGTCAGCCAATCTCAATGGGAAATACTACCACAAGAGATACAAGGGCGTGAGGAACGGCATCTTCTGGGGAACATGGCACAACATGTCTAGTGAAGCATACCCCACCAACTACAGGCAGGCCTTCAAGACGGTCAAAATGATGATACGGCCAAAGAACTACGCTCCGTAAAGGAAAGAGGCATGAGAACGGAAACGACCGGAAAGATCAGAAATACTTTTTTCTTCTTGACTTTCTGCTCCTTTGACCTTTCTGCCTCCCACTGTCAAGTTTAACCACATGGTTCAGAGACAGTCTGAGACACCTGGGTTCCCGGGAATAAAACAGCAATGAAATCTTCAAAAGGTTGGAAAAGTCTCCACCGAAGACAAACGTATGATATCACAGTCATAGGAAATGTCTGGCTATCGGTCAAACAACATACTATGGACCATGTGCCACTGAACTAACaacagcaacaaaatggagtcagaTATGTTTGCTTTCTGCAGAATAATTACATTGGTTGACTGCAGGCACTGCAACTGTTTCCAGACATCTGTATTCCATTGTCTGTATAATACTGCCACCTAGCGTTATGTCATTGCATTGCATCCTCATCTAGACAGGCTAAGCAGCATGGAAACTAAAGGCCCCAAGTTCAAGGaggaaatgtacagtatttaTTTTTGAAAGTATGATTGATAGCTTTTACATAACTAATATATGGACTGTATGTTCATGCAGTACACAGTGATTGCCTAAGATGAGTAGCCCAAAAAGTATTGTACTCGGAATAAAAAGCATTGTATTGGGGTTGAGAAGTTGATCACAGAGAAGTTTAAAACTAAAAGATGGAGTATTTCGACTTGTATGAAAAGGTTTAAAGTGTAGGTATATTTGAATAGAATAATTGATTATGTAGCTTGATGTATAGAACTGTATGTACACTAGACGTTTTTTCGTTCACCTTCTATTGTCCTATTTAAAAAAGTATTTACTTTTTATATAAAAACATGAATAAACTTTTTACAGATTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1954584 lncRNA upstream 8221 11185279 ~ 11186324 (+) True G1706615
TU1954566 lncRNA upstream 24529 11169743 ~ 11170016 (+) True G1706605
TU1954544 lncRNA upstream 71565 11116816 ~ 11122980 (+) True LOC110531908
TU1954550 lncRNA upstream 76158 11117939 ~ 11118387 (+) True G1706590
TU1954549 lncRNA upstream 80080 11113674 ~ 11114465 (+) True G1706589
TU1954593 lncRNA downstream 16059 11217008 ~ 11217387 (+) True G1706624
TU1954618 lncRNA downstream 60108 11261057 ~ 11261272 (+) True G1706649
TU1954622 lncRNA downstream 73997 11274946 ~ 11275779 (+) True G1706653
TU1954623 lncRNA downstream 75101 11276050 ~ 11276592 (+) True G1706654
TU1954624 lncRNA downstream 75751 11276700 ~ 11277472 (+) True G1706655
XM_036956859.1 mRNA upstream 55732 11103189 ~ 11138813 (+) False LOC110531908
XR_005038527.1 mRNA upstream 56243 11103180 ~ 11138302 (+) False LOC110531908
XR_005038528.1 mRNA upstream 81870 11112212 ~ 11112675 (+) True LOC118942875
XM_036956853.1 mRNA upstream 291976 10900849 ~ 10902569 (+) True LOC118942874
XR_005038526.1 mRNA upstream 397554 10794769 ~ 10796991 (+) True LOC110510616
XM_036956867.1 mRNA downstream 110241 11311190 ~ 11316722 (+) True LOC110499797
XM_036956866.1 mRNA downstream 140687 11341636 ~ 11354995 (+) True LOC110499792
XM_036956871.1 mRNA downstream 155049 11355998 ~ 11359023 (+) True LOC110518478
XM_021564084.2 mRNA downstream 209502 11410451 ~ 11414636 (+) False LOC110490628
XM_021564085.2 mRNA downstream 209502 11410451 ~ 11414640 (+) True LOC110490628
TU1954537 other upstream 78120 11109428 ~ 11116425 (+) False LOC110531908
TU1953937 other upstream 1059161 10134388 ~ 10135384 (+) True G1706152
TU1953859 other upstream 1276526 9915713 ~ 9918019 (+) True G1706090
TU1953737 other upstream 1441072 9748185 ~ 9753473 (+) True G1706013
TU1953592 other upstream 1534405 9659331 ~ 9660140 (+) True G1705920
TU1954621 other downstream 69780 11270729 ~ 11272473 (+) True G1706652
TU1954697 other downstream 197091 11398040 ~ 11399228 (+) False G1706711
TU1954698 other downstream 197091 11398040 ~ 11399228 (+) False G1706711
TU1954699 other downstream 197091 11398040 ~ 11399288 (+) False G1706711
TU1954701 other downstream 197091 11398040 ~ 11399228 (+) False G1706711

Expression Profile