RNA id: XM_036956866.1


Basic Information

Item Value
RNA id XM_036956866.1
length 3041
RNA type mRNA
GC content 0.55
exon number 13
gene id LOC110499792
representative True

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 11341636 ~ 11354995 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CGTGCTGTTGACGTGGAAGAGACACAGAAGAAAGATGGCGGCGCCCTCTGCAGAGCAGCAAAACGGCCAAAGTGATGAATCTGATCTACAAAGCCCTATATCGACAAATTATGAAGACTCCGAAACAGAATCGGGGGAGGGAGCACTCCCCGACTACGTTGTCGAATTGATAGAGAAAGAAATCGGAGTGGATCTGAAGTCGCTGAAGAAAGTTAGCGCGCTCCTGGAGAAACTGACAGCGGAAAACAAGTTGCTGGAGGAGCAGGTTCTGACGGTGTCCAGTTCGGTGCCGCTGCGGGTGTCAGCAGCGCTGTCTGCTGCCGAGGAGTCCCGTGTGTCTCTGGAAGGTTTGCTCCAGCGGGAGAGGGTCCTGTCCAACACCCTGATACAGCACCTGCAGGGCGCCCAGCCCTGGGCAGACAGCCTGGGACGGACCCTGGAACAGCTGgacaacacagagaaacacatgAAATACCTGCAGTGTCTGTCACGCATTGAAGAACTCAGTGACAGCATCCAGCAGTGTCTGATCACCAACAGTATATGGGAGGCAGTGGTGGCGGTGGGCAGCATGGCCAGTCTAGATGTGGGCCTAAAGCAGTCTGGCTGCTCTCATCTCCAGGCCTTCCTCAGAGAGACACTATGCTTCTGGCACAAGATCATTAAGGACAGACTGGCTGGTGATTTTGAGGAGTTGCTGATCCAGCTCCACTGGCCGTTCATCTCGCCTcccacccagtctctctccccccctgccaACGCTCAGGAGCTCCACAGCCAGCTGGAGCTTCTGGTGGCCCAGCTCCTGTCTCTACAGACCTCTGATGATCTCATATCAGAGAAGCCAACCTCTGTGTCCCGTGTAGGGTTGCCCCCGACGACacccctgtctcttcctgtccaGATCATGTTGCTTCCTCTGAGCAAGAGGTTTCGATACCACTTCACTGGAAACCGTCAGACCAATTCACTCAACAAGCCTGAGTGGTTCCTGACCCAGGTCCTGATGTGGATGGGTAACAGCTCCAACTTCATGGAGGAGAAGATCCAGCCCATTCTGGACAGAAATGGAGCTAACGTCAACGCCAAGGTGGAGCTGTGTCGCGGTCTACTCACCCTGGCCCAGGAGAAGCTAGCGTTGGATGCTCCACGGCTGCTCTACGACGACGCTCTCTTCTGCCACCTGGTGGACGAGATCCTGCAGTTTGAGAGGGAGCTGCGCACCACCCACTCCTACCCCAGCACCCTGCCCGGAGTGCTGCATGTACTGCTGGAGGAGGTCGTGCTGCAGAAGTGGCTCACTGTGGAGAggaagatgGCGATAGAGAAGGTGGATGCCATGCTGTCTGCTGAGGGGGCTTGGAGCTCCCAGTACAAAGACATCAGTGACATGGACGAACTCAAGGCTCCAGACTGCGCTGAGACCTTCATGACCTTACTGCTGGTCATCACTGACCGCTACCGTGCCCTCCCCTGCCCTCGTGCCCAGCTGCGTTTCCTGGCGCTACAGAGAGAGCTGGTGGACGACTTCCGTATCCGCCTCACCCAGGTGATGAAGGAAGAGTCCCGTAACCCGCTGGGCGCTAGATACTGTGCTATTCTCAACGCTGCCAACTACATCTCCACCGTGCTGGGGGACTGGGGAGACAACGTGTTCTTCCTACAGCTGCAGCAGTCAGCTGTggccctgggggaggaggagCTGTTGGGGCCGCTGGGGGTCACTGAGTCCGGCCGTCTGGCCTCTCTGGAGGGGTCTCTGTTTGAGGGGCTCCTGGGGCTgctggagaggctgagaggagacatGCTGGGCAGGTTACTGGAGGCTGTCATGAGGGACGTACAGAAGAAGGCTCAGCCCTACTGCAGGGACAGGTGGTTGTCTCTGCCGTCCCAGTGTGACCAGGCCACCATGTCCCTGTCCAGTTTAGCCTGTCCTCTGATGCTCTGTCTCAGGGACCACCTGCTCCAGCTGCAGCAGATGCTGTGTCTGCCTCTCTTCCAGACGGGCTGGCAGGACCTGGCTGAGAGGCTGGACCTCTTCCTCTACCAGAATGTGATTCTGTATAACCACTTCAACGAGGGGGGTGCAGCCCAGCTCCAGTTCGACATGACAAGGAACCTCTTCCCTCTGTTTGGACACTACTGCAAGAGGCCTGAGAACTTCTTCAAACAtgtGAAGGAGGCCTGCGTCATCCTGTGTCTGAATGTGGGCTCAGCTCTTCTTCTACGAGACGTCCTAAGGCAGGCTGAGGAAGACGAGGAGCAACCAGGGACCCCGGACGGCAAGCAGCCCAGCCCTACGTCAGCCCTCAACGAGCTGGGGGTCTACCGCCTGGCCCCCTGCGACGTCCTCATCCTGCTCAACCTCAGGGCCTCCTGGCCGGGAAAGtgaggggagatgggaggaagaacagtagcctggtcccagatgtgttTTTGACAACTCCTATGGTGATGCCGATTGGCCGTAGGAGTTGAGCAAGGCAGCACTAACAGATCTGTGACCAGGCTAGGACGGGCTTCAGCTGGCAAAGAACAACCACTACCAATGAACTACACCGTATCCCATAAACCTGGAATAGACCGCTGTCATTCCTGAATACTCCTGTCCTATCCCGTTTAATCCCAGTGTTGTTTACTTTGCGGATCCTCTGTCTAGAAGCTCAGTGTTCCATATCAACTCACCACTCCTGGTCTAAACGCAGGGGAGAGCCCTCGACTGGAGCCTGAAGGATGTGTTTATATGAACTGCTCATGTAGATGACATTATTTGTCTATTGACTGACAGCACAGACTTCTGTCTTCTTGTGGAGGAGATCTAGTAGTACCACATGGTGTGGATGGGTATATCAGGAGGTCCCCTCTCTCACTTCCTGACAGGGACTGTTGTCTTTAACCACACGAGATATAGGAGACCTTAACACTGCTGTTTTAAGCAGTCCAGTGCATTTGATAACAACAACAGCCCTGTCTGTCACATTACCTTATTTAATGTCATATACATTTGTAAAGAAGTGAGAAATAAAAACGTTTAAATC

Function

GO: NA

KEGG:

id description
K20474 RINT1, TIP20; RAD50-interacting protein 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1954658 lncRNA upstream 6591 11298864 ~ 11335045 (+) False G1706678
TU1954656 lncRNA upstream 6591 11334156 ~ 11335045 (+) True G1706678
TU1954679 lncRNA upstream 14916 11326236 ~ 11326720 (+) True G1706694
TU1954669 lncRNA upstream 23844 11317123 ~ 11317792 (+) True G1706684
TU1954659 lncRNA upstream 38471 11298864 ~ 11303165 (+) False G1706678
TU1954639 lncRNA downstream 8161 11363156 ~ 11433934 (+) False G1706665
TU1954640 lncRNA downstream 8161 11363156 ~ 11377111 (+) False G1706665
TU1954641 lncRNA downstream 8161 11363156 ~ 11366927 (+) True G1706665
TU1954693 lncRNA downstream 15136 11370131 ~ 11383885 (+) False G1706708
TU1954694 lncRNA downstream 15136 11370131 ~ 11383885 (+) True G1706708
XM_036956867.1 mRNA upstream 24914 11311190 ~ 11316722 (+) True LOC110499797
XM_036956863.1 mRNA upstream 140687 11194545 ~ 11200949 (+) True LOC118942876
XM_036956859.1 mRNA upstream 202823 11103189 ~ 11138813 (+) False LOC110531908
XR_005038527.1 mRNA upstream 203334 11103180 ~ 11138302 (+) False LOC110531908
XR_005038528.1 mRNA upstream 228961 11112212 ~ 11112675 (+) True LOC118942875
XM_036956871.1 mRNA downstream 1003 11355998 ~ 11359023 (+) True LOC110518478
XM_021564084.2 mRNA downstream 55456 11410451 ~ 11414636 (+) False LOC110490628
XM_021564085.2 mRNA downstream 55456 11410451 ~ 11414640 (+) True LOC110490628
XM_036956879.1 mRNA downstream 77289 11432284 ~ 11468646 (+) False LOC110503752
XM_036956880.1 mRNA downstream 77289 11432284 ~ 11468646 (+) False LOC110503752
TU1954621 other upstream 69163 11270729 ~ 11272473 (+) True G1706652
TU1954537 other upstream 225211 11109428 ~ 11116425 (+) False LOC110531908
TU1953937 other upstream 1206252 10134388 ~ 10135384 (+) True G1706152
TU1953859 other upstream 1423617 9915713 ~ 9918019 (+) True G1706090
TU1953737 other upstream 1588163 9748185 ~ 9753473 (+) True G1706013
TU1954697 other downstream 43045 11398040 ~ 11399228 (+) False G1706711
TU1954698 other downstream 43045 11398040 ~ 11399228 (+) False G1706711
TU1954699 other downstream 43045 11398040 ~ 11399288 (+) False G1706711
TU1954701 other downstream 43045 11398040 ~ 11399228 (+) False G1706711
TU1954702 other downstream 43045 11398040 ~ 11399228 (+) False G1706711

Expression Profile