RNA id: XM_036956873.1


Basic Information

Item Value
RNA id XM_036956873.1
length 2414
RNA type mRNA
GC content 0.51
exon number 11
gene id LOC118942878
representative False

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 11393032 ~ 11397690 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGACTGTTTCCCCTTCTGATTCGTGATGGGTTGTGACTACTGTCGTAGTTAATGACTAACTGACCCGCTCCACCACTCACACCCATTGGTCACTAGTCCttccatacagacagacagagaggggtatTTGACCGGTGTGTGTTCTCAAGGTTGGAAGACATGACAGTGTTCAGGAGCAGCGTTCCGGTACAGTAAATTCAGCTGACTAGTTCAGCCAACAGAAACGCCCTGCTCAAACAGACTTTCCAAGACAACACTAGAACTCTTCTAAGTCAAGctgtgtgtcagtccgctgtgtgtcagtcagctgtgtttcagtccgctgtgtgtcagtccgctgTGTGTCAGTCCATTGTGTGTCAGTCAGCTGTGTTTCAGTCCATTGTGTGTCAGTGAGCTGCAGGGATGGCGCACCATGAGCAGAGCACAGCCACTTTCCCAGAACACATCCGTAAGAAACGGAACGGTGAACAGCTGAGCGCTGGGGAGATCCGAGACTTCGTACAGGGTGTCAAGGACAAGACCATCCAAGAGAGCCAgattggagcCATGCTGATGGCAATCTGGCTGAAGGGAATGGTAGCAGAGGAGACACTCGCACTGACGAAGGAGATGATGATGTCAGGGGAAGTGATGTCATGGCCGGCAGAGTGGGAGGGGCTAATGGTGGATAAACACTCGACAGGTGGAGTGGGGGACAAGATCAGCCTGGTGCTGGCTCCTGCTCTGGCTGCCTGCGGCTGCAAGGTACCCATGATAAGTGGCAGAGGTCTGGCACACACAGGCGGCACGCTCGACAAACTGGAGTCCATCCCTGGCTTTAATGTCTATCAGTCAGTACAACagCTGCATCGAATCCTGGAGGAGGTTGGCTGTTGCATTGTAGGACAGACAGATAACCTGGTGCCTGCTGACAAGGTCATGTACGCTCTGAGAGACGTTACGTCTACAGTCGACAGCCTCCCACTCATCACAGgCTCTATCATCTCTAAGAAGGGTGCTGAGTCTCTGAGTGCCTTGGTTCTGGATGTGAAGTTTGGGAATGCAGCTCTCTACAAAGACCTGGGCAGTGCCAAGTCACTGGCCCAGTCCATGGTGACAGTTGGGAACAGTTTGGGGATCCGTACGGGGGCGGTGCTTAGTCGTATGAACTGTCCAATTGGTCGCTGTGTGGGGAACACTCTGGAAGTGATGGAGTCCCTGGAGTGTCTAAAGGGGAGGGGCCCAGACGACATACTGGAGCTGGTCACAAGTCTGGgtgggctGCTGTTGTGGATGATTGGCCGTGCAGGGAGCCTGGATGAGGGTAAAAAGGTGATCTCTACAACCCTGCAGAATGGTGCAGCCCTGGAAAAGTTCCAGAACATGATGATTGGTCAGGGAGTAGCCAGTCAGATCGCTGCATCACTCTGTTCAACCAACGCAGACTACTACAGCATCCTGAGACGGGCACACTACCAAACAGAACTGGAGACACAGGGCCACgGGACAGTGCTGGACATAGACGGCATGGTCATTGCTCAGGTGCTGCACAGGTTGGGGGCGGGACGTTCGAAGGCCGGAGACCCTGTCAATCACAGCGTGGGGGCGGAGCTTCTGGTGTCTTTGGGACAGAAGGTGGAGAAAGGGCAGCCATGGCTGCGTGTCCACTACGAGACTCCGGCGCTGAGTGCAGAGCAGAGACTCAGTCTACAAGGGGCGCTGACACTGGGGCCCGTCGACCAGCTACACACACAGCCACTAGTGGCAGAAATCATACTGCCATAGTGACACAAATCTACTCTATGTTAAAGCTTGATTTGGAGATGACCTGCCTTTGGGAATctcagtgttttatttttaaagaaTGTATAGTTCAGAACTAAAGCCTCTGTGTCCTGCTCTTCACTCTCAAAGTCCTCTCTGATTCACCCACATAAAGTCATAAGATTCTGTGGAGACTGAATAGATGTTTACCGTTTCCAGGAACTGTGTGAAGGCAATTTCTGTTAAACCTTACTAATGTTTGTGTACTAAAATATCCTTCTTTAAGCCTCGGCATTGGGCTTGAGATGGTTAAAGAAATCAATATAAGATATAAAAGTGTGTGCACATTAATAGAGACATGTTGTAACTGTTCTGGGTGTGTAGAATGACCCCAGGATGTCTGGGAGCTCAGCCAATACTTGACAGGAACTGACTGGTTCCTCTTAAGTTAACTGGAGACAGAGTAAAGGTTTTATCCTGCACACCAATGATTGAACTATTGTTCTGTCTGGAGCCTGTTTCGGGgcaaaatattcatattttgtgtgtgtgtgtgtgtgtgtgaccagtacGACCATACATCATCTGGGCAGACAGTCAAAGGCGCTAGCTTGCCCAACTTGGGGGAACCGTTAAGctactcaaatcaaataaaagtttatttgtca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1955594 lncRNA downstream 2213 11363157 ~ 11390819 (-) False G1707366
TU1955590 lncRNA downstream 15662 11363157 ~ 11377370 (-) False G1707366
TU1955574 lncRNA downstream 25876 11365525 ~ 11367156 (-) False G1707366
TU1955581 lncRNA downstream 25876 11365525 ~ 11367156 (-) False G1707366
TU1955668 lncRNA downstream 31974 11353330 ~ 11361058 (-) True G1707416
TU1955603 lncRNA upstream 522 11398212 ~ 11398817 (-) False LOC110490863
TU1955608 lncRNA upstream 522 11398212 ~ 11398817 (-) False LOC110490863
TU1955609 lncRNA upstream 522 11398212 ~ 11398817 (-) True LOC110490863
TU1955699 lncRNA upstream 31793 11429483 ~ 11430311 (-) True G1707439
TU1955712 lncRNA upstream 72070 11469760 ~ 11470228 (-) True G1707448
LOC118942879 mRNA downstream 9663 11379599 ~ 11383369 (-) True LOC118942879
XM_036956876.1 mRNA downstream 22675 11366715 ~ 11370357 (-) True tymp
XM_036956870.1 mRNA downstream 57249 11327273 ~ 11335783 (-) True LOC110499803
XM_036956869.1 mRNA downstream 57255 11327273 ~ 11335777 (-) False LOC110499803
XM_036956868.1 mRNA downstream 88966 11288244 ~ 11304066 (-) True LOC110515610
XM_036956877.1 mRNA upstream 96 11397786 ~ 11405326 (-) False LOC110490863
XM_036958462.1 mRNA upstream 24934 11422624 ~ 11426073 (-) True LOC110500987
XM_021576869.2 mRNA upstream 34336 11432026 ~ 11433779 (-) True akap14
XR_005038530.1 mRNA upstream 229945 11627635 ~ 11628185 (-) False LOC118942880
XM_036956902.1 mRNA upstream 453483 11851173 ~ 11861067 (-) False LOC110499694
TU1955632 other downstream 109250 11283220 ~ 11283782 (-) True LOC110515612
TU1955631 other downstream 117296 11275342 ~ 11275736 (-) False LOC110515612
TU1955507 other downstream 219142 11173010 ~ 11173890 (-) True LOC110531911
TU1955511 other downstream 259242 11130215 ~ 11133790 (-) True G1707317
TU1955453 other downstream 371994 11019026 ~ 11021038 (-) True G1707276
TU1955924 other upstream 217620 11615310 ~ 11628453 (-) False LOC118942880
TU1955921 other upstream 227453 11625143 ~ 11628453 (-) False LOC118942880
TU1955931 other upstream 227453 11625143 ~ 11628453 (-) False LOC118942880
TU1955932 other upstream 227453 11625143 ~ 11628453 (-) False LOC118942880
TU1955935 other upstream 227453 11625143 ~ 11628453 (-) False LOC118942880

Expression Profile