RNA id: XM_036956890.1


Basic Information

Item Value
RNA id XM_036956890.1
length 5048
RNA type mRNA
GC content 0.54
exon number 30
gene id nrcama
representative False

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 11479780 ~ 11624211 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGAGCTCCTGCATTCTTCCTGCACCGGAGCGGTGGGTTGCGCGTGCGCGAGACGGCGGCAGCAAGAGCGCTGCTCGTTTGACAGCGGCTCGGGAAAAGGGAGCTGGTGCTAGAACCGGAGAACGGAGCAGAGGACCACAGGCTGTGAGGCTGCAGCAGGGAACGAGTCAGAGCACTGCCCGGAGACAGGAGACAAAAACCAACTCATCCTCTTCTATTCCTACAGCTGCGAGAAGAGAGAAAACCCTGTCCACGTTTGCTTTAACAGGTCTGAAGTCCTTCTCAGCAGTCAGAGTGTGTGGATGAATCCAACTGGAGGACGAATCCCTTTGATTGGATCCCCATAGctgactgACTGGTGTGGTGGATACCCTGCTTGACCCCCACATAGTCCTCATTGTGGAGAGCTCTGACCAGGGGGGAAGATTTTTAACGTGACACGCCGGACCATGGACAGGAAGAGGAAATGGGTGCTGAGCagcggtgctttgctggtgatattCCTTGGTCGTATGACCACAGCCTTAGAAGTGCCTCTTGACCtaccacAGCCTCCCACTATAACCCACCAGTCCCCTAAGGATTTCATCATCGACCCTCGGGAGAACATCCTCATCTACTGTGAGGCCAAAGGGAAGCCGCATCCCAGCTTTTCCTGGACACGGAATGGGACACATTTTGACGTGGAGAAGGACTCTAAGGTGTTGATGAAGCCGAGCTCAGGGACGCTGGTCATAGACATCAGTGGGGAGAAGGCTGAGGCCTACGAGGGGATCTACCAGTGTACCGCACGCAATGAGCATGGGACCGCTGTTTCCAACAACATCTTCATCAGACAGTCGAGGTCCCCCTTGTGGtcgaaggagaggaaagaggcaATCATGGTACAGGTGGGAGTGTCTCTGGTGCTGCAGTGTCGACCGCCTGCAGGCCTGCCCCCTCCCATCATCTTCTGGATGGACAACAACTTCCAGCGCCTGCCTCAGAACACGCGTGTGTCCCAGGCGTTAAACGGAGACCTGTACTTCTCTAACGTCCTATTGGACGACACCAGGAACGACTACATCTGTTACGCCCGCTTCCCTCACACACAGACCATCCAGCAGAAACAACCCATCACTGTCAAAGTCCTGGACAACAGTCCATCGGGGGAGCGGCGACCCAGCTTCATGGCTCCTCTGGGGCGGAGCAGCACCCAGATGGCCCTGAGGGGAGGGGTTCTGGAGCTAGAGTGTATCGCTGAAGGACTTCCGACTCCGGAGGTGTCCTGGTATAAGGAGAGTGGCGATCTTCCTAGCAGCCGGATGTCCTTCCACAACTTCCAGAAGACGTTGAAGATCGCAGATGTGATGGAGGCGGACGCCGGGGACTACCGCTGCACGGCCAAGAACAGCCTAGGCTCCGCCCATCACACCATCAAAGTCAACGTCAAAGCGGCTCCGTTCTGGATCAGTGCCCCCAGGAACCTGATCCTGGCCCCGAAGGAGACGGGCATCCTCACCTGCAGAGTAAGTGGAGACCCCAAGCCCCAAATCGCCTGGTCCGTCAACGGAGTCCCCATCGAAGACTCTCCAAAGGACACGAGTCGGAAGGTGGAGGACGACACAGTGATTCTGAGCGACGTCCAGACCGGCTCCAGCGCTGTCTACCAGTGCAACGCCTCCAATGAGTTTGGCTACCTGCTGGCTAATGCTTTTGTCAATGTGCTTGCCGAAGCACCAAGGGTGCTGACTCCCCCCAACAATGTGTACCAGGTCATCACCAACAATCCTGCCTTCCTGGACTGTGCCTCGTTCGGCTCGCCCATACCAACCATCACATGGTTTAAGGACAGCCAGACCAGTATCCTGAATAGAGACCCATATGTGATCCATAATAACGGTACCTTAGAGATCAACGTAGCCCAGTCCCTGAACAGTGGCAAGTACACCTGTATAGCCTCCAACAACCTGGGAACCAGGGAGAACCATGTCTACTtggaggtcaaagAGCCGACGAGGATCCTGGCCCAGCCAGAGTACATGGTGGTCCAGAGGAACAGGAAGGCCGTGTTTGAGTGTAAAGTTAAACACGACCCCACCCTCATCCCCACCATGAACTGGCTCAAAGACAACGGAGAGCTGCCTGACGACGAGAGGTTCTTGGTGGACACTGACAGTCTGACCATCAACGAAGTGACAGAGGAGGACGAGGGAACCTACACCTGTGTCATGAACACCACCCTGGACCAGGACTCAGCTAGCGCCATGCTCACCGTCGTTGAGGAACCAGACCCTCCTACAGACCTGGAGCTgacggaccagagagagaggagcgtcCAGCTCACCTGGATACCTGGAGACGAACACAACAGTcctacacagaAGTTCCTAGTCCAGTATGAGGACCTGCTCCACCAGGCTGGGGTGTGGCACAACCTGACAGAGGAGGAGGGCACCAAGACCACGGCCCACCTGGACCTGTCCCCCTACGCCTACTACTCCTTCAGGGTTCTGGCCGTGAACCACGTGGGCtacagccagcccagccagccctcCAGACAGTACAGGACCAACCCTGCAGCTCCAGATGTGAATCCAACAGATGTCCATGGTGTTGGAACTGAACATAATAACTTAGTCATCTCATGGAAGGAGCTGACAGGCCTCCAGTCCAATGGACCAGgactacagtacaaggtgaacTGGAGACAGAAGGATGTGGAGGAGGACTGGTTGTCTGAGACCGTGGCTAACGCCTCCAAGTATGTGGTGTCAGGCACGCCCACTTTCGTACCCTACGAGGTCAAAGTTCAGGCGGTGAACGACTACGGAAACGGACCAGCGCCTGAGGCGGTGGTGGGGTATTCTGGAGAGGACGTGCCCATGTCAGCCCCAGAGAGTGTCCAGGTGCTGGTTCAGAACGGGACGCTTGCAGAGGTTCACTGGGAGCCTGTCCTCACCTCCATGGTCAGGGGACGACTCCAGGGCTACAAGGTGTCCTACTGGCGTGAGCGTAGCCTCCACCAGGCAGAGGCTCAGCAGGAGGAACAGCAGGTGTTGCTCTTCAGTGGGAACAGGACTGATGGCAGACTACCAGGCCTCAAACCCTACAGCCTCTATACACTGAACATCAGGGTGGTCAACGGCAAGGGAGAGGGGCCCCCCAGCCCCAACCACAACTTTGAGACCCCAGAGGGAGTCCCTGGTCCTCCTTCCTTCTTGCGTATAAAGAACACCGACATGGACTCTCTGACGCTGGAGTGGGGTCCTCCACAGGACAACAATGGTCGCCTCACCGGCTACACACTCAAATACCAGCCAGtcaacagCTCCAATGAGCTGGGTCCCGTTGAGGAGATGATGTTCCCAGCCAATGAGACCACCGTAGTCCTGGCCGACCTCAAGTACAGCACCCGCTATAAGTTCTACTTCAACGCTAAGACCATCAAGGGCTCCGGCCCAACCATCACAGAGGAGGCTGTCACTATCATGGATGAAGCCTTTATTCAGCAACCCATAGTAGATGTGTTCAAAGgCTACACAGAACCCCATCTTCCAATCTCTCCCATCACTCAGTCTCTGCGCCCCCCGTTTCACAAGGTGCGTCCGATAGGCCCGGCGTTCACCAATGTAAACTCCTCtgtggtgggagaggagggagcagtgATAAGTTGGGAATACTTTGGACCAGATAAGAATGTGTATGTGGAGTATATTGTAGAAAACAGTAAAGAAGACTGGACAAAAGAGTGTGTAAACGGCAGTAGCGGGTCTCAGACCTATCTGATAAAGGGCTTAAAGCCGGGGACGTCCTATAGGGTTCGGCTGGTAGTTAAAGATCACTCTGAGGCTACCATACACAGTACAGAGGAGCTAGTGATAACGCTGCCAGaagCAATGAAAAGCGACCAGGTAGACCTAGCCACTCAGGGTTGGTTCATAGGGCTGATGTGTGCCATCGCTCTCCTCATCCTCGTCCTTCTCATCATCTGCTTCATCAAGAGGAACAAGGGAGGGAAAtacccagTGAAAGAAAAAGAGGATGCTCATCAAGACCCAGAGATCCAGCCTATGAAGGATGATGATGGGACGTTTGGAGAGTACAGTGACACGGAGGACCACAAGCCTCTGAAGGGCAGCCGGACGCCGTCCAACGGAACGGTGAAGAGGGACGACAGTGATGACAGCCTGGTGGACTACGGCGAGGGAGGGGATGGGCAGTTCAACGAGGATGGATCCTTCATCGGCCAGTACAGCGGCAAGAAGGAGAAAGACACGCATGAGGGCAACGAGAGCTCCGAGGCCCCCTCGCCGGTCAACGCTATGAACTCCTTCGTCTAGGTAGAGAGACAGTCACCGCTAGCCGATGGCGATGCCATGACGACTGGCTGCCATGGAAACCGTCACTGTGGTGACCTGACCTGTCACCATGGAGACCTGCCACCATAAGGACGTGTCACCATGGAGACTCATCACCGTGGTGACCTGTCACTGTGGCCACCTATCACCATGGCTACTTCTGTCACACCCTGTCATCTCTCCACAGCCTGCCCCTCCTGCCCGCCAactccccacccccccccccatcacactGTGACTACTCTCACCACCCTCACTATCACACAATGGGAGAAACAACTAACCAACCAGAACAGACATGAGAAGAAGAACCTTAGAACCATTTGAAAAAGTAGAAGGAGGGATGTAGGAGcccagaaacagacagagagagatggcggATGGAGGAGAAGGCAACACTGACAAGCAGGAAGTGGATGAATGTATTCCAGGAGCAGACTGGGTTGGTTCTCATCACCCAGACTGCTCCACAAAGTGCTGGAGAGGGCATGTGTGTGTTAGGGCCATTTTAGCTTTTGCAAACGTATATATGATGACATATATAGATCGTTGTCTTTTTGCAAACAATGATATCCattagaaaatatattttctccACATCACCCAACATGGCAGTCAACAGTATACATTCTTCCATTCTATACATTCATCTGCTTCTGATTAATATACTGCATGGAATGAATGATATTCTAAACCATTACACACGGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1954744 lncRNA upstream 2313 11477264 ~ 11477469 (+) True G1706737
TU1954738 lncRNA upstream 5646 11473471 ~ 11474136 (+) True G1706735
TU1954631 lncRNA upstream 11136 11467586 ~ 11468646 (+) True LOC110503752
TU1954722 lncRNA upstream 60577 11418672 ~ 11419205 (+) True G1706723
TU1954635 lncRNA upstream 82167 11396509 ~ 11397615 (+) True G1706662
TU1955727 lncRNA downstream 30713 11654924 ~ 11656704 (+) True G1707461
TU1955797 lncRNA downstream 38494 11662705 ~ 11663646 (+) True G1707515
TU1955806 lncRNA downstream 44736 11668947 ~ 11669233 (+) True G1707522
TU1955814 lncRNA downstream 57597 11681808 ~ 11683020 (+) True G1707527
TU1955827 lncRNA downstream 72568 11696779 ~ 11697038 (+) True G1707533
XM_036956879.1 mRNA upstream 11136 11432284 ~ 11468646 (+) False LOC110503752
XM_036956880.1 mRNA upstream 11136 11432284 ~ 11468646 (+) False LOC110503752
XM_021564085.2 mRNA upstream 65142 11410451 ~ 11414640 (+) True LOC110490628
XM_021564084.2 mRNA upstream 65146 11410451 ~ 11414636 (+) False LOC110490628
XM_036956871.1 mRNA upstream 120759 11355998 ~ 11359023 (+) True LOC110518478
XM_036956899.1 mRNA downstream 6221 11630432 ~ 11660551 (+) False cntn1b
XM_036956900.1 mRNA downstream 6232 11630443 ~ 11660551 (+) True cntn1b
XM_036956901.1 mRNA downstream 100215 11724426 ~ 11797595 (+) True LOC110515322
XM_036956912.1 mRNA downstream 266519 11890730 ~ 11931253 (+) False pphln1
XM_036956907.1 mRNA downstream 267019 11891230 ~ 11931253 (+) False pphln1
TU1954699 other upstream 80494 11398040 ~ 11399288 (+) False G1706711
TU1954703 other upstream 80494 11398040 ~ 11399288 (+) False G1706711
TU1954698 other upstream 80554 11398040 ~ 11399228 (+) False G1706711
TU1955728 other downstream 29690 11653901 ~ 11654623 (+) True G1707462
TU1956174 other downstream 239451 11863662 ~ 11864573 (+) True G1707772
TU1956462 other downstream 623817 12248028 ~ 12250124 (+) True G1708014
TU1956830 other downstream 954397 12578608 ~ 12584156 (+) True G1708323
TU1956882 other downstream 1025475 12649686 ~ 12651577 (+) True G1708367

Expression Profile