RNA id: XM_036956908.1


Basic Information

Item Value
RNA id XM_036956908.1
length 1826
RNA type mRNA
GC content 0.52
exon number 10
gene id pphln1
representative False

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 11890730 ~ 11931253 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTCCAACGTGCGTATTGTTTATAGCGTGTCTAAATGTTTGTGTTAGTAAATATGTATTTGTTCTAAATATTGATTTCGTTTTGAGCGAATTAACTCAGCATGGACTGTGGACTAGCTTgagcatgtagctagctaacTATTGACTGTCTCTATTGGCATAACCAACTCCCAATACTACTACATAGACTTGTCCAGACAAAACAATGGCCTAcaggagagacagaaacatgagGGATGTCTACGATGAACGCTTCCTACCAGACAGACCGGCCCCATATCCCAGATCAGCTGGAGCAGGGCCTGTAGAGAGGAGGCCGGCTGGTTTCGGAAGGCCAGACGAGGAGTACAATCGAGGGTTTGAGTATGACGGGCCTCGCTTTTATCCAAATGGAGGCCCTCGAGGTTACCATGGCGAGGATCAAAGAGGCTACCATGGCGACAGCCTTCATTTTCCTAATGAGCGCAGAGGTATCCCACCTTCCCGGAGACCGGAGGAGCCGTACCCCTACCCTTCTAGACCACCTCCTAGAGAGGACCCCCATACAACACGCCAGATGGAGTTCAGAAGCAGTGGCCGTGCAGCACCCCCTCCCCCCAGCGTCAGGGCTCAGGGGATGTACCCTGCACCCCGCTCCCTGTCTGCTGTGGTCCCAGAGGGGGGTGATGACACCCTGATGCAGGCCATCCTAAACCTGGAcagaggAAGGAAAGGCCCCTTGCCTCCCCTGAGAGCAGacgtccccccctccccccacagccGGTCCGGCTCCACTGTCAGTAGCAAGAGCTACTCTCCTGACAGAGCCAAGGGTCTCCCCCACCCCGCCCAGCAGAAAAacaAAGACAGGCCCCCTGGTCATTCTCAGGACGGGTCACCACAGAGCATAGCGTCCACTAAGgaGGAGGCTCATGTCCTAGAGTGGGACCGTGAGGAGGGCTTGCCCCCCATCGATGAGACCCCCAAGACCCAGGATGACTTCCAGGAGCGCCGAGCGCAGGCCATCGGAGCCAAGGCCCGGGAAATAGAGCAGGTGTACCGGCAGGACTGTGAGACGTTTGGCATGGTAGTGAAGATGCTGGTTGCTAAGGACGCCAATCTGGAGAAGCAGCTGCAGACTCCACTCCGAGAGAACCTGGGAGAGATCAGGGAGCGTTGCCTTGACGACCTCAAGCACTTCATCACCGATCTGGATCAGGTGATTGAGGTCGTACGGCAACCGGAACCCTCCACCTGAGACAGACAGCCAATCGCGTCCCATCTTACTGTAAGGGAGCCAATCAGGTCCAGTCTTTTTTTTGGGCCTCCGGCATACAGTGAGGGCAGGACTCCCAGGGGTCTGCCATGTGTTAAGACTGTGGATATCTTGAGCAGTATTGGCCCCATGTTTTCCCATCTTTCTGGGTTTCAGGCCAGACGTGCACCAGGTGACCCATATGTACTGATAATGTCCAGCAGTAATTAGTCAATGTTGTCAAAAACAGTGTTCAAAGTTCTGTTCAGCTACTTCCTCACCACCCGATGAGGGTATTGGTTCTACAATGTCCTTAACAAGTAGAACTGGTATGTCAATTTAGGTTCATCTGGGATTTACTGATTTTAAAACTGTTGTTAACCAGTGTAACCATAGGGACTGGTCATCAGTGTTTTTTACTGAACTGGTAATCTAATGATGATGTGTGACGTGTTATAGCTCAGTATCCACTGGTACCACAAACAATGCTCTgctactacagtaccagtcaaaggtttggacacacctactcattcaagggtttttctttatttttaccattttctacattgtcgaataatagtgaaggcatca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1956165 lncRNA upstream 2152 11888577 ~ 11889265 (+) True G1707768
TU1956159 lncRNA upstream 31121 11860088 ~ 11860296 (+) True G1707763
TU1956136 lncRNA upstream 52761 11838403 ~ 11838656 (+) True G1707743
TU1956134 lncRNA upstream 53609 11837605 ~ 11837808 (+) True G1707741
TU1956110 lncRNA upstream 82696 11808311 ~ 11808721 (+) True G1707717
TU1956161 lncRNA downstream 18 11931271 ~ 11932509 (+) True G1707765
TU1956320 lncRNA downstream 93867 12025120 ~ 12025345 (+) True G1707892
TU1956323 lncRNA downstream 96652 12027905 ~ 12028172 (+) True G1707895
TU1956324 lncRNA downstream 97245 12028498 ~ 12029646 (+) True G1707896
TU1956327 lncRNA downstream 106823 12038076 ~ 12038357 (+) True G1707899
XM_036956901.1 mRNA upstream 93822 11724426 ~ 11797595 (+) True LOC110515322
XM_036956899.1 mRNA upstream 230866 11630432 ~ 11660551 (+) False cntn1b
XM_036956900.1 mRNA upstream 230866 11630443 ~ 11660551 (+) True cntn1b
XM_036956889.1 mRNA upstream 267206 11479786 ~ 11624211 (+) False nrcama
XM_036958473.1 mRNA downstream 437616 12368869 ~ 12384112 (+) True LOC118943005
XM_036956927.1 mRNA downstream 460376 12391629 ~ 12421266 (+) False LOC118942882
XM_036956925.1 mRNA downstream 466547 12397800 ~ 12401053 (+) False LOC110490813
XM_036956926.1 mRNA downstream 466547 12397800 ~ 12401053 (+) True LOC110490813
XM_036956924.1 mRNA downstream 477300 12408553 ~ 12415265 (+) True LOC118936492
TU1956174 other upstream 26844 11863662 ~ 11864573 (+) True G1707772
TU1955728 other upstream 236794 11653901 ~ 11654623 (+) True G1707462
TU1955767 other upstream 322461 11568429 ~ 11568956 (+) True G1707493
TU1954707 other upstream 492189 11398040 ~ 11399228 (+) False G1706711
TU1956462 other downstream 316775 12248028 ~ 12250124 (+) True G1708014
TU1956830 other downstream 647355 12578608 ~ 12584156 (+) True G1708323
TU1956882 other downstream 718433 12649686 ~ 12651577 (+) True G1708367
TU1957032 other downstream 852954 12784207 ~ 12785502 (+) True G1708495
TU1957013 other downstream 869515 12800768 ~ 12813728 (+) True LOC110490810

Expression Profile