RNA id: TU1956162


Basic Information

Item Value
RNA id TU1956162
length 777
lncRNA type sense_over
GC content 0.50
exon number 2
gene id pphln1
representative True

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 11890730 ~ 11931253 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CGATGAGACCCCCAAGACCCAGGATGACTTCCAGGAGCGCCGAGCGCAGGCCATCGGAGCCAAGGCCCGGGAAATAGAGCAGGTGTACCGGCAGGACTGTGAGACGTTTGGCATGGTAGTGAAGATGCTGGTTGCTAAGGACGCCAATCTGGAGAAGCAGCTGCAGACTCCACTCCGAGAGAACCTGGGAGAGATCAGGGAGCGTTGCCTTGACGACCTCAAGCACTTCATCACCGATCTGGATCAGGTGATTGAGGTCGTACGGCAACCGGAACCCTCCACCTGAGACAGACAGCCAATCGCGTCCCATCTTACTGTAAGGGAGCCAATCAGGTCCAGTCTTTTTTTTGGGCCTCCGGCATACAGTGAGGGCAGGACTCCCAGGGGTCTGCCATGTGTTAAGACTGTGGATATCTTGAGCAGTATTGGCCCCATGTTTTCCCATCTTTCTGGGTTTCAGGCCAGACGTGCACCAGGTGACCCATATGTACTGATAATGTCCAGCAGTAATTAGTCAATGTTGTCAAAAACAGTGTTCAAAGTTCTGTTCAGCTACTTCCTCACCACCCGATGAGGGTATTGGTTCTACAATGTCCTTAACAAGTAGAACTGGTATGTCAATTTAGGTTCATCTGGGATTTACTGATTTTAAAACTGTTGTTAACCAGTGTAACCATAGGGACTGGTCATCAGTGTTTTTTACTGAACTGGTAATCTAATGATGATGTGTGACGTGTTATAGCTCAGTATCCACTGGTACCACAAACAATGCTCTgc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1956192 lncRNA upstream 4105 11911962 ~ 11912473 (+) True G1707785
TU1956191 lncRNA upstream 8139 11908146 ~ 11908439 (+) True G1707784
TU1956190 lncRNA upstream 19505 11896774 ~ 11897073 (+) True G1707783
TU1956168 lncRNA upstream 23376 11891342 ~ 11893202 (+) False pphln1
TU1956165 lncRNA upstream 27313 11888577 ~ 11889265 (+) True G1707768
TU1956161 lncRNA downstream 118 11931271 ~ 11932509 (+) True G1707765
TU1956320 lncRNA downstream 93967 12025120 ~ 12025345 (+) True G1707892
TU1956323 lncRNA downstream 96752 12027905 ~ 12028172 (+) True G1707895
TU1956324 lncRNA downstream 97345 12028498 ~ 12029646 (+) True G1707896
TU1956327 lncRNA downstream 106923 12038076 ~ 12038357 (+) True G1707899
XM_036956901.1 mRNA upstream 118983 11724426 ~ 11797595 (+) True LOC110515322
XM_036956899.1 mRNA upstream 256027 11630432 ~ 11660551 (+) False cntn1b
XM_036956900.1 mRNA upstream 256027 11630443 ~ 11660551 (+) True cntn1b
XM_036956889.1 mRNA upstream 292367 11479786 ~ 11624211 (+) False nrcama
XM_036958473.1 mRNA downstream 437716 12368869 ~ 12384112 (+) True LOC118943005
XM_036956927.1 mRNA downstream 460476 12391629 ~ 12421266 (+) False LOC118942882
XM_036956925.1 mRNA downstream 466647 12397800 ~ 12401053 (+) False LOC110490813
XM_036956926.1 mRNA downstream 466647 12397800 ~ 12401053 (+) True LOC110490813
XM_036956924.1 mRNA downstream 477400 12408553 ~ 12415265 (+) True LOC118936492
TU1956174 other upstream 52005 11863662 ~ 11864573 (+) True G1707772
TU1955728 other upstream 261955 11653901 ~ 11654623 (+) True G1707462
TU1955767 other upstream 347622 11568429 ~ 11568956 (+) True G1707493
TU1954707 other upstream 517350 11398040 ~ 11399228 (+) False G1706711
TU1956462 other downstream 316875 12248028 ~ 12250124 (+) True G1708014
TU1956830 other downstream 647455 12578608 ~ 12584156 (+) True G1708323
TU1956882 other downstream 718533 12649686 ~ 12651577 (+) True G1708367
TU1957032 other downstream 853054 12784207 ~ 12785502 (+) True G1708495
TU1957013 other downstream 869615 12800768 ~ 12813728 (+) True LOC110490810

Expression Profile