RNA id: XM_021564167.2


Basic Information

Item Value
RNA id XM_021564167.2
length 1981
RNA type mRNA
GC content 0.47
exon number 1
gene id LOC110490708
representative True

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 12417436 ~ 12419416 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGGAGGAGGTTCTCCCTGATCAGCAGCACTGTGAGCAGGAGTGGAGCCCCAGTCTGGGGCAGGAGAACCCAGTGCTTCcacagattaaagaggaacaggaggaactcaggaccagtcaggaggaagagcagcttcaaGGGCTGGAGGCTGATTTCAAATTCACTCCTTCCTGTGTGAAAAGTGAATGTGATCAGGAGGACCCACTTCAGCCCTTCACTTCTCCCCAAACCCAGActgtggagaacagagagagtgatcCTAAACAAGTGGAACTCACACCTTTTGTTACTGTGACCCACCTTAAGGGCCTCTACATTCCCTGTGACCCTCCAGATAATCAGAACAATGCCTCCAGACAAATCTCAGCCGTAAGCAGCGACCCAGCAGCACTTGACTGCAGCCGCCATTGGATCCAAATCCATCAGTGGTGGAACACTGTTTCAAACCCAGCACCACGTCTGGAAAAACATTTGCAGAGAGAACTGACCTGCAGAGGCATGTGACTCTCATCAGGAAGAGACTCAGTGAATGTCGCTTGTGCTTAAAACACTACAACTCCACCTGTAAACTGAAGGCCCATGTCTGCCTCTGTCACAGTGGGAAACCCAACACCTGCCCTGTTTGTGGCAAGACCTTCAATCTCAAAGTAGATCTGTCCAAGCACATGAggattcacacaggggagaaacgtTATTGTTgtggtgactgtgggaagagctttAGTCGCAAGTGGACCCTAGCCGCACATATACAGATTCACACAGGAGAAAAACCATTTAACTGTGCTGACTGCGGGAAAAGCTTCAATTTGAAGGGGAAACTTAGGAAACATAAACATACTCACACATGAGAGAAATAATTTAGCTGTGgagactgtgggaaaagcttcaatcAGAAGGGGGCCCTAATTAAGCATATAcgaactcacacaggagagaaattatTTAGCTGTGATGAATGTGGGAAAAGCTTCCATTTAAAGGGGAACCTAAAGAAGCATGaactgactcacacaggagagaaatcatttagctgtggtgactgtgggaaaagaTTCAAACGCAGGGAAAACTTAATTATGCATAtactgactcacacaggagagaaacaatTTAGCTGTGGTGACTGCGGGAAAAGCTTCTCCCAGAAGGGGAACCTTAGTAGGCACATACTGACTCACACAGGGGAGATGCCATTTAGCTGTGtagactgtgggaaaagcttcagcCAGAAGGGGACCCTAACGGTGCATATacggactcacacaggagagaaaccatttagctgtgtagactgtgggaaaagcttcagcCAGAAGGGGACCCTAACGATGCATATacggactcacacaggagagaaaccatttagctgtgtagactgtgggaaaagcttcagcCAGAAGGGGACCCTAACGGTGCATATacggactcacacaggagagaaaccatttagctgtgtagactgtgggaaaagcttcagcCAGAAGGGGACCCTAACGGTGCATATacggactcacacaggagagaaaccatttagctgtgtagactgtgggaaaagcttcagcCAGAAGGGGACCCTAACGGTGCATATacggactcacacaggagagaaaccatttagctgtgtagactgtgggaaaagcttcagcCAGAAGGGGACCCTAACGGTGCATATacggactcacacaggagagaaaccatttagctgtgtagactgtgggaaaagcttcagcCAGAAGGGGACCCTAACGGCACATATacggactcacacaggagagaaataaaTAAGCTGTGATGTGTGCGGAGGAAGCGTCACTCGAAAGTCTAACTTACTGATCCATGTGGAAAACAGGATGAAAACTGAAAGAAAACAGAACATTTGTACAAAGAACTGTTTAGTCACAAGATGAGAATAAAAAGATAGGATGTGGACAATACTCTGAGTACACGCTCATGGACTCACATCTATTGGTTGGTGGAGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1956667 lncRNA upstream 21596 12393940 ~ 12395840 (+) True LOC118942882
TU1956644 lncRNA upstream 51925 12361470 ~ 12365511 (+) True G1708165
TU1956635 lncRNA upstream 61623 12355378 ~ 12355813 (+) True G1708160
TU1956609 lncRNA upstream 75224 12333933 ~ 12342212 (+) True G1708135
TU1956406 lncRNA upstream 252135 12165035 ~ 12165301 (+) True G1707971
TU1956741 lncRNA downstream 37436 12456852 ~ 12457169 (+) True G1708247
TU1956744 lncRNA downstream 40551 12459967 ~ 12460208 (+) True G1708250
TU1956751 lncRNA downstream 48974 12468390 ~ 12468614 (+) True G1708257
TU1956762 lncRNA downstream 64526 12483942 ~ 12484305 (+) True G1708268
TU1956765 lncRNA downstream 68263 12487679 ~ 12488026 (+) True G1708271
XM_036956924.1 mRNA upstream 2171 12408553 ~ 12415265 (+) True LOC118936492
XM_036956925.1 mRNA upstream 16383 12397800 ~ 12401053 (+) False LOC110490813
XM_036956926.1 mRNA upstream 16383 12397800 ~ 12401053 (+) True LOC110490813
XM_036958473.1 mRNA upstream 33324 12368869 ~ 12384112 (+) True LOC118943005
XM_036956908.1 mRNA upstream 486183 11891417 ~ 11931253 (+) False pphln1
XM_036956928.1 mRNA downstream 2217 12421633 ~ 12448308 (+) True LOC110490703
XM_036956931.1 mRNA downstream 325584 12745000 ~ 12825754 (+) False LOC110490810
XM_036956936.1 mRNA downstream 326439 12745855 ~ 12822949 (+) False LOC110490810
XM_036956930.1 mRNA downstream 326443 12745859 ~ 12825754 (+) False LOC110490810
XM_036956932.1 mRNA downstream 326444 12745860 ~ 12825754 (+) False LOC110490810
TU1956462 other upstream 167312 12248028 ~ 12250124 (+) True G1708014
TU1956174 other upstream 552863 11863662 ~ 11864573 (+) True G1707772
TU1955728 other upstream 762813 11653901 ~ 11654623 (+) True G1707462
TU1955767 other upstream 848480 11568429 ~ 11568956 (+) True G1707493
TU1954708 other upstream 1018208 11398040 ~ 11399228 (+) True G1706711
TU1956830 other downstream 159192 12578608 ~ 12584156 (+) True G1708323
TU1956882 other downstream 230270 12649686 ~ 12651577 (+) True G1708367
TU1957032 other downstream 364791 12784207 ~ 12785502 (+) True G1708495
TU1957013 other downstream 381352 12800768 ~ 12813728 (+) True LOC110490810
TU1957204 other downstream 532269 12951685 ~ 12952515 (+) True G1708635

Expression Profile