RNA id: XM_036956931.1


Basic Information

Item Value
RNA id XM_036956931.1
length 6786
RNA type mRNA
GC content 0.51
exon number 42
gene id LOC110490810
representative False

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 12745000 ~ 12825754 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACTCACTCCTTTGTCTGAGTGATATTTCTGCAGAAAGCCACGTCTTTCCACCGTGTAGGAGTGGACACAATAATCATACGATGCTGCTACTGACGATGCGAGCGCAGTTCTAATGGAATGAATGAATTCGCTTCAGAACGGCAGCGTCCTCCATTGCATCATTTCACAAATCTCACCAGGATAAAATCAATGACCGGACAAGACAAGACATCCCACAACAGGACGCGTCTAAAAAAACCGACGGAACACAGCGGAGCCGTAGATAGGGGCTTCTCTGGACCAATAAGGTGGCATGGCTGGCCTGTCGTTCTGTGGCAACAATGTGACCAAGAATGCCTACAGTGTGGATACGGGGATGTTGAACAATGGCTGCTTCGTGGACGCCCTCAACCTGGTCCCTCACGTCTTCCTGCTGTTCATCACCTTCCCTATCCTCTTCATTGGCTGGGGCAGTCAGAGCTCTAAGGTTCAGATCCACCATAACACCTGGCTCCACTTCCCTGGACACAACCTGCGCTGGATCCTCACATTCACTCTGCTGTTTGTCCACGTCTGTGAGATCGCTGAGGGAATCGTCTCCAACAAACAGATGGACACCAATCACCTCCACCTCTTTATGCCAGCGTTTATGGGTTTCATAGCAGCCACTACATCTGTGGTGTACTACCACAACATAGAAACCTCCAACTTCCCCAAACTACTGCTGGCTCTGTTTATCTACTGGGTTCTGGCGTTCATCACCAAGTCCATCAAGCTGTGGAAGTTTGCAGAGTACGGCGTTGGAGTGTTGCACCTGAGGTTCTGTATCACAGCCCTGCTGGTCGTTCTGTACGGACTCCTCATGGCTGTAGAGATCAACGTCATCAGGGTCAGGAGGTACGTGTTCTTCGCCAACCCCCAGAAGGTAAAGCCTCCAGAGGACCTTCAGGACCTGGGAGTGAGGTTCCTCCAGCCCTTCGTCAACCTCCTCTCCAAGGCCACATACTGGTGGATGAACCCCCTGATTATAGGAGCCCATAAAAGACCCATTGAGCTGAAGAAGATTGGCAAACTCCCCATCGCCATGAGAGCCCTCACCAACTACCTGAAGCTCAAAGACGCCTACGAGGATCAGAGGCAGAATGCCGAGGACCCAGAGAAGGCTCCATCCATCTGGCGCTCTATGTACCGGGCGTTTGGCCGACCCATCCTCCTCAGCAGTACCTTCCGTTACCTGGCGGATCTGCTGGGCTTCGCCGGGCCGCTCTGCATCTATGGCATCGTCGAACATCTCAACAAAAAGCCCGTCAAGGAAGGGAGTGTGGTCCCCTATTTCGAGGTCTACTTCATGTCATCCAACGAGCTGCTCCAGAATACGTCAGTGCTGGCTGTTCTGCTGTTCCTGGCCCTGGTGCTACAGCGGACCTTCCTACAGGCCTCCTACTATGTCACCATAGAGACCGGCATCAACCTCCGTGGAGCCCTGCTGGCGATGATCTACAACAAGATCCTGCGTCTGTCCACCTCTAACATGTCCATGGGAGAGATGACCCTGGGCCAGATCAACAACCTGGTTGCCATAGAAACCAACCAACTCATGTGGTTCCTCTTCTTGTGTCCCAACCTCTGGGCCATGCCAGTGCAGATTGTGATGGGCGTGATCTTGCTGTACTACCTGCTGGGGACCAGTGCTCTGATTGGAGCTTCGGTCATCGTGCTGCTGGCTCCAGTCCAATACCTGATCGCTACCAAGCTGGCTGACACCCAGAAGAGCACCCTGGACCAGTCTACGGAACGTCTGAAGAAAACCACAGAGATTCTGAAGGGGATCAAGCTGCTGAAGCTGTACGCCTGGGAGAACATCTTCTGTGACAGTGTAGAAGATACCAGGGGCAAAGAGCTCACCAGCCTCCGCACCTTCGCCCTCTACACCTCCATGTctaTTTTCATGAATGCTGCTATCCCCATCGCTGCTGTGCTTGTGACGTTTGTCAGCCACGCCCTGATCAACAAGTCCAAACCCAGCTCCTCAGAGGCCTTCGCTGCTCTGGCCCTCTTCCACATCCTGGTTACCCCACTGTTCCTGCTCTCCACCGTGGTCCGCTTCGCAGTCAAGGCCATGGTCAGCGTCCAGAAGCTGGGTGAGTTCCTGCAGAGCGATGAGATTGGCGATGACAGCTGGAGGAACGgagacatgtctgtgtccctaGAGGCCTGTAAGAAACACCCTGGGAcgaccaagGCTATAAACAGGAAGCAGCCCCTGCTCTACCAGATGGACAACTATGAGCAGCCAGCACGCAGACCACTGCGACCTAACGAGACTGAGGACGTGGCTGTCAAGGTGAACGGTGGATTCTTCACATGGGGAAGCAACTTGTCAACGTTGTCCGACATCAACATCTGCATTCCAACAGgtcagctgaccaTGATCGTGGGCCAGGTGGGTTGTGGGAAGTCGTCCCTGTTGCTGGCCATGCTGGGAGAGATGCAGACCCTCAGTGGAAAGGTCTACTGGAGCAAactGCCTGTGAGTGAGATGCTGCACGAGGCCAACAGTTGTTTTGAGATGGACGGGTCTTTTGAAGAAACCAGGAGTAAGAACAGGTACTCTGTGGGCTACGCTACCCAGAAGTCTTGGCTGCTGAATGCCACCGTGGAGGATAACATCACGTTTGGCAGTCCCTTCAACAAACAGAGATACAAGACTGTGATTGATGCCTGCTCCCTGCAGCCTGATGTAGACCTCCTGCCCTTCGGAGACCAGACGGAGATCGGAGAGAGGGGGATCAACCTGAGTGGAGGCCAGAGACAGAGGATATGTGTGGCTCGGGCTCTCTACCAGAACACCAACATCGTCTTCCTGGATGACCCGTTCTCAGCGCTGGACATCCACCTGAGTGACCACCTGATGCAGGAGGGCATTCTGAAGTTCCTACAGGATGATAAACGCACCGTGGTCCTGGTCACACACAAACTGCAGTACCTCATCCACGCTGATTGGATCATAGCCATGAAGGATGGCTCAGTGCTGAGGGAAGGCACTCTGAAGGATATTCAGACTCATGATGTAGAGCTGTATGAACACTGGAAGACCCTGATGAACAGACAGGACCAGGAACTAGAGAAGGACACTGAGATTGATAACTGTCAGACTGCTCTGGAGAGGAAGACCTTGAGAAGAGCTTTCTACTCCAGAGAGGCCAAGAACCAGGTCGACGATGACGAAGAAGaggaggaagaggaggaggaagaggacgacAACATGTCGACGACCACCAGTCGGCGCTCTAAGATCCCGTGGAGGGTGTGCTGGCAGTACCTGTCCTCTGGTGGCTTCCTCATGGTCTTCCTCATGGTCTTCTCCAAGCTGCTGAAACACTCAGTCATGGTCGCCATCGACTACTGGCTGGCCGAATGGACTGCTAATGGCGATGGCCCAGTCAATGGGACTGCTTATGACGATGTCCCAGTCAATGGGACTGCTAATGGCGATGTCCCAGTCAATGGGACTGCTAATGACGATGCTAATGGATATGCCCCAGACTTTGGAAATGTTACAAGAGACTTTGTCAATGCCTCTGCAGCAGCTGTCTTCTCCAATCGGACAAACTCAGCGGCTGGTCTGCCTGACTCCTACTATGTGCCAGTGTTTATCATCCTGTGTGGAGCGGGGATAGCTCTGTGTCTGATCACCTCTCTGACTGTGGAGTTCCTGGGTCTGTCTGCTGCTACCAATCTGCACCACAACCTGCTCAACAAGATCATCCACgcacctatcagATTCTTTGACGTGACCCCCTTGGGCCAGATCCTGAACCGTTTCTCAGCTGACACCAACATCATAGATCAGCACATCCCTCCTACCCTGGAGTCTTTGACCCGCTCCACTCTGCTCTGCCTGTCAGCCATCGGGGTCATAGCGTTCGTCACCCCAAGCTTCCTCATCGCTCTGATTCCTCTGGCTGTGTCCTTCTACTTTATACAGAAGTACTTCCGGGTTGCCTCAAAgGACCTTCAGGACTTAGATGACTCCACCCAGCTTCCTCTGCTGTGCCACTTCTCTGAGACTGCAGAGGGACTCACCACCATCCGAGCATTCAGACATGAATCTCGATTCAAGCAGAAGATGCTGGAGCTGACAGATACCAACAACACAGCCTACCTGTTCCTCTCTGCTGCCAACCGCTGGTTGGAGGTCAGAACGgacTACCTGGGTGCTGTCATTGtgttaacagcagcagtagcctCGATATGGAGCTCTGGCAAGAACCTTCCCTCTAGCATGGTGGGGTTAGGCCTGACCTACGCCCTTACAGTGACCAACTACCTGAACTGGGTGGTGAGGAACCTGGCTGACTTAGAGGTCCAGATGGCTGCTGTCAAGAAGGTCAACAGCTTCCTGAGTACAGAGTCTGAGAACTACGAAGGCTCCATGGATACCACCCAGGTCCCCGAGGACTGGCCCCAGCACGGAGAGATAAAGATCCAGGATCTGTGTGTACGTTACGACCCTCTTCTGAAGCCTGTCCTCAAACACGTTAATGCCTACATCAACCCCGGACAGAAGgtgGGCATCTGTGGACGCACAGGAAGTGGaaagtcctccctctctctggccttcTTCAATATGGTCGACGTGTTTGAAGGGCGGATCATCATTGATGGTATAGACATCTGTAAGCTGCCCCTCCAGACCCTGAGGTCTCGTCTGTCCATCATCCTCCAGGACCCGGTGCTGTTCAGCGGATCCATCCGGTTTAACCTGGACCCAGAGCGTACCTGTACTGATGACAGACTGTGGGAGGCGCTAGAAATCGCCCAGCTGAAGAACATGGTCAAAGCCCTTTCTGGGGGACTAgaCGCGGTggtgacagagggaggggagaactTCAGTGTGGGTCAGAGGCAGTTGTTCTGTCTGGCCAGAGCCTTCGTCAGGAAGAGCTCCATCCTCATTATGGATGAAGCCACTGCATCCATCGACATGGCAACGGAGAATGTCTTACAGAAGGTGGTGATGACAGCCTTCGCCGACCGAACTGTCGTCACTATTGCACACCTGGTGTCCTCCATCTTGGAGGCTGAACAGGTGCTGGTGTTCTCCGCGGGGCAGCTAGTGGAGTGTGACTCTGCAGTCAACCTGCTAGCACAGCAGGACAGCCTCTTCAGTGTCTTAGTGAGGACTCACAAGTAGGCCCTGTCCCACCCTGCCTTCCAGGCCTCTACAGCCTCCCGGCATCGTGTCCACACCATCCTGGAAGCTGACCTGGTGATCGTGATGAAGCGAGGAAACATCTTAGAGATCGACAAACCAGAGACCCTTCTGGAGAACGAGGACGGCATGTTCGCTTCCTTCGTCAGGGCTGACATGTAGGCTCACACACTGTCAGCCGGCACACCATCAGTCTATCAATGAATCAGCCTCCTCAGTGTTTCCCACAATGCTTAGGTGGGGCGCAGAGTTCCagatattattaccattattgaCTGAAGCTCATACTGTAGGTTTTAGACAGGAGCCAGGCCGGTTGACCACCTCCACTTGGTAatggtaggggaaacactgcttcCCAAAGCACCACTGATGGCCTTCTTGTGTTGATTATTGGTAATGTATTAGTTATTGAGTGATTGATTGAATGAGTGACCTATTAACTTGGTCGTGTAAGGATCACAATCGGTCGTTAAATATGATTACAATTTTACAAAGTTTTACCTAAATGTTTTAtgtttaaattatatatttaGTTACTTATTACTTACTATAtgatgtatgtatatgtatatattttacacCCTTATTCATAGGTAAGCAATAAGCAGGTATAGTGTAGTATTACTACATTGGTACGAACACTGTAGGGTATATCGCTGGAGCATTTTTAGCCTGGTGACCCTTTGTCTGTCTGATTTGATGCGATGCTGACTGAATCATGGGACTGTGGACATTTAGTGGTCACTGACTCCTCTTTGAAAAAGGACAGCTTTCACCCATTGGGTGTTCTCTAAAGGACTGAATCTTAATGTGAAATGTGCAGGCCTAACTTCAACTCATACAGAACTTGTGTACTGTCAAGATGTATGTGAAAACTTGGAGTTACGCATGTTGGTGTTAAGTTAAGATCCAGCCCTAAATGATAAGGGAAGATTCCGCTTTCTTCTACCAGCCATAAGCCAGGCCAGCGTTAGTTTCTACCATACATGGTGCTGGCTGGTGTAATTGGTAAGGAAAGTGGTTTCTATTTTCAGTATTAAACCTGGTTTCTGGGGAGCTGTGCCACTGTCCCACTGTAGTACCTGAATATTTATAGTTATTTTGCATATCGAACAATGATCATTTTATATTGACTtctttgtattgtattatagcctGAATGACAAACTGATTATTGTAAGCTACACTTTGAAGAATGTCAGTATCTGTTTTACCGATATACTgctgtgttgttttgtttgtcaGTGTAAAGCGGTTTCTCATCTCAAGAAATTCGTTTTTAAATCATTCTTCATTCTTATTCAATCCCAAACTCATGACCCAGAATTCCTGCCCTACTTTCCTTACACCCGTGTGGTCTGTTTTCCCACTCATGTTTTTAACTCAAGACTCCCTCTCTATAATCTATGAATGGGTAGGCGTCTTCTAGCCTGGTTGAACAAGACTGAACCATTGTTTCGTTTAGCTTGGATTCCAGGCTACGTACCTCAACCTCCATACTCTCCATTGTATACATTATAAGTGAGTAGCAGCTAAGTATATTTAATGTAGCTTCTGCTGTGGCGGGGGGTCCATGTAAAGGCCAAAGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1956928 lncRNA upstream 12058 12712997 ~ 12732942 (+) True G1708410
TU1956940 lncRNA upstream 17502 12726527 ~ 12727498 (+) True G1708422
TU1956931 lncRNA upstream 28083 12716161 ~ 12716917 (+) True G1708413
TU1956887 lncRNA upstream 86350 12658006 ~ 12658650 (+) True G1708370
TU1956868 lncRNA upstream 117793 12626957 ~ 12627207 (+) True G1708353
TU1957035 lncRNA downstream 59890 12885644 ~ 12885849 (+) True cmas
TU1957165 lncRNA downstream 75529 12901283 ~ 12907083 (+) True G1708602
TU1957212 lncRNA downstream 134707 12960461 ~ 12960856 (+) True G1708643
TU1957215 lncRNA downstream 138787 12964541 ~ 12964769 (+) True G1708646
TU1957219 lncRNA downstream 153377 12979131 ~ 12979348 (+) True G1708650
XM_036956928.1 mRNA upstream 296692 12421633 ~ 12448308 (+) True LOC110490703
XM_036956927.1 mRNA upstream 323734 12391629 ~ 12421266 (+) False LOC118942882
XM_021564167.2 mRNA upstream 325584 12417436 ~ 12419416 (+) True LOC110490708
XM_036956924.1 mRNA upstream 329735 12408553 ~ 12415265 (+) True LOC118936492
XM_036956925.1 mRNA upstream 343947 12397800 ~ 12401053 (+) False LOC110490813
XM_036956941.1 mRNA downstream 3415 12829169 ~ 12837237 (+) True LOC110516535
XR_005038765.1 mRNA downstream 16628 12842382 ~ 12842522 (+) False LOC118943029
XM_036956943.1 mRNA downstream 18349 12844103 ~ 12860368 (+) False LOC118942883
XM_036956944.1 mRNA downstream 18349 12844103 ~ 12860368 (+) False LOC118942883
XM_036956945.1 mRNA downstream 18349 12844103 ~ 12860368 (+) False LOC118942883
TU1956882 other upstream 93423 12649686 ~ 12651577 (+) True G1708367
TU1956830 other upstream 160844 12578608 ~ 12584156 (+) True G1708323
TU1956462 other upstream 494876 12248028 ~ 12250124 (+) True G1708014
TU1956174 other upstream 880427 11863662 ~ 11864573 (+) True G1707772
TU1955728 other upstream 1090377 11653901 ~ 11654623 (+) True G1707462
TU1957204 other downstream 125931 12951685 ~ 12952515 (+) True G1708635
TU1957288 other downstream 226779 13052533 ~ 13053969 (+) True LOC110490642
TU1957306 other downstream 274087 13099841 ~ 13101833 (+) True G1708702
TU1957974 other downstream 930432 13756186 ~ 13765456 (+) True G1709276
TU1958014 other downstream 1094804 13920558 ~ 13926350 (+) False LOC110499758

Expression Profile