RNA id: XR_005038765.1


Basic Information

Item Value
RNA id XR_005038765.1
length 141
RNA type mRNA
GC content 0.48
exon number 1
gene id LOC118943029
representative False

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 12771599 ~ 12842545 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGCTTTGCGCAGTGGCAGTATCGTAGCCTATGAGGTCTATCCGAGGCGCGATTATTGCTAGTTGAAAACTTTACCCAATACCCCGCCGTGACGACTTGAAATATAGTCGGCATTGGCAATTTTTGACGGTCTCTAAGGAGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1957029 lncRNA upstream 70995 12770722 ~ 12771387 (+) True G1708492
TU1956928 lncRNA upstream 109440 12712997 ~ 12732942 (+) True G1708410
TU1956940 lncRNA upstream 114884 12726527 ~ 12727498 (+) True G1708422
TU1956931 lncRNA upstream 125465 12716161 ~ 12716917 (+) True G1708413
TU1956887 lncRNA upstream 183732 12658006 ~ 12658650 (+) True G1708370
TU1957035 lncRNA downstream 43122 12885644 ~ 12885849 (+) True cmas
TU1957165 lncRNA downstream 58761 12901283 ~ 12907083 (+) True G1708602
TU1957212 lncRNA downstream 117939 12960461 ~ 12960856 (+) True G1708643
TU1957215 lncRNA downstream 122019 12964541 ~ 12964769 (+) True G1708646
TU1957219 lncRNA downstream 136609 12979131 ~ 12979348 (+) True G1708650
XM_036956941.1 mRNA upstream 5145 12829169 ~ 12837237 (+) True LOC110516535
XM_036956939.1 mRNA upstream 16628 12745861 ~ 12825754 (+) False LOC110490810
XM_036956943.1 mRNA downstream 1581 12844103 ~ 12860368 (+) False LOC118942883
XM_036956944.1 mRNA downstream 1581 12844103 ~ 12860368 (+) False LOC118942883
XM_036956945.1 mRNA downstream 1581 12844103 ~ 12860368 (+) False LOC118942883
XM_036956942.1 mRNA downstream 1584 12844106 ~ 12860368 (+) True LOC118942883
NM_001124190.1 mRNA downstream 24966 12867488 ~ 12885770 (+) False cmas
TU1957013 other upstream 28654 12800768 ~ 12813728 (+) True LOC110490810
TU1957032 other upstream 56880 12784207 ~ 12785502 (+) True G1708495
TU1956882 other upstream 190805 12649686 ~ 12651577 (+) True G1708367
TU1956830 other upstream 258226 12578608 ~ 12584156 (+) True G1708323
TU1956462 other upstream 592258 12248028 ~ 12250124 (+) True G1708014
TU1957204 other downstream 109163 12951685 ~ 12952515 (+) True G1708635
TU1957288 other downstream 210011 13052533 ~ 13053969 (+) True LOC110490642
TU1957306 other downstream 257319 13099841 ~ 13101833 (+) True G1708702
TU1957974 other downstream 913664 13756186 ~ 13765456 (+) True G1709276
TU1958014 other downstream 1078036 13920558 ~ 13926350 (+) False LOC110499758