RNA id: XM_036956944.1


Basic Information

Item Value
RNA id XM_036956944.1
length 3009
RNA type mRNA
GC content 0.45
exon number 9
gene id LOC118942883
representative False

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 12844103 ~ 12860368 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GAATTGAGTTAATACACACGCGCACTGCACAGAGTCGTTCCAGCTAGAAGTAGTAAATACTTTACCGTAAGTACTGCTGTTTGGTTGGCTAGCGCAATTGAATTGTTGTCTATGATGAGTACATTTACATTATTTTATGCAATATTGAAACCTGGAGTTCTGTGATTGAGAAAATAGACATAGGACATGCTTCTACCATTTTGCACCTTAGGTATCCTCGTGTCGATAATATTGATCGCCATCATAGTTTTTAACGCATTGACCTCAATCATTACGGTACAATTCTATGGTGACGTTCTTTCTGATTTCGTAGCCACAATGAAATATCATAATACGCCACTTGTTCTGTTtataaatgtaatatttgtaGGATTAATAGGCCGTCCTTCAGTGTACACTACTGACAGTGTAGTCAGTAGTATATATTGTAACCTaaatacctagctagctacagtgaGCTAGAACACaataagtagctagctagattcaTCAGCCGACTGCTAGACATAGCTACCGCTAACGTTActggttagttagctagctagttaagttACAGTGATACCGCCACGTCTTCTTAACCTCCCACTGGGCTACTGAGTGACCATTTACAATGGCTGCTGCTAGAAAACGAACGCGATCAGGCATCGAAGATGTGAGAGACAGAAAAGCAAAGGTTATTAAAGACAGCGGTGAGAAGAGACACATCGCAGCCCTGATCCTGGCGAGGGGAGGCAGTAAGGGGATCCCCCTGAAAAATATCAAAATGCTAGCCGGTGTCCCCCTCATCGGATGGGTTCTGAGAGCTGCAGTGGACTCCAAACAGTTTGACAGTGTGTGGGTATCAACTGACCATGATGACATTGAGAAGGTAGCCACGGCATGGGGAGCTCAGGTTCACCGCAGGAGCCCAGAGGTGTCCAAAGACTCCTCCAGCTCTCTTGACACCATCCAGGAATTCGCCCGATTAAACCCAGAGGTGGATGTGATCTGTCACATCCAGGCCACGTCTCCCTGCCTGCACCCCTTCCACCTGAAGGAGGCCCTGGAGATGATCACCAAGCAGGGCTTCACGTCCGTCTTCTCCGTGGTCCGACGACACCACTTCCGCTGGCAGGAGGTGAAGAAAGGAGgTAGTGTAGCCACCCAGCCTCTCAACCTGGATCCATCCAACAGGCCCCGGAGACAGGACTGGGATGGAGAGCTGTGTGAGAACGGATCTTTCTATTTTTCCACCAGAGCCCTTATAGAGGAAGGTGTTTTGCAGGGGGGGAAGTGGGCTTACTATGAGATGCTGCCAGAGTACAGTGTGGATATTGATGTGGATATCGACTGGCCCGTGGCAGAACAGAGAGTACTGAGGTTTGGTTACTTTGGCCTGGACAAGCCTGAGGTGGTGCGTCTGCTGCTGTGTAACGTCTCCGGCTGTCTGACTGACGGCCGCgtcctcatctctgtctctggAGAGGAGATGGTCTCAGTCAACACCAGAGATACTATGGGTATCCGcatgctgcagagagagggggtggagGTGATCTTGATCTCGTCCGGTGAGGACCCTGTGACCAAGGCCCTGGCTGACAATCTATCCCAGAGGACAGGCTGCGAGGTCAGGCAGCTGGGCAAAGACATCCAGGGTGAGGTCAAAGCCATGATGGATGACAAGGATCTGGACTGGAAGGAGGTCGCCTATATGGGTAATGATGCACCAGATGTTGACTGTCTGAACCTGGCTGGGCTGAGTGCAGTACCCCGGGACGCCCCAGTGGTGGCGATCAACGCTGCTAAATACTCCTGCCACAATGCTGCAGGCCTGGGGGCTGTGAGGGAGTTTTCTGAACACATCCTGCTGCTCAAGAAGAAGGCCAAGTCTCAGATGGAACAGGACCGCATCCACAGAAATACATTCTAAACTCTAGAATGTGTTCTAAAGTCACAGAAATACATTCTAAACTCTAGAATGTGTTCTAAAGTCACAGAAATACATTCTAAACTCTAGAATGTGTTCTAAAGTCACATAAATACATTCTAAACTCTAGAATGTGTTCTAAAGTCACATAAATACATTCTAAACTCGAATGTGTTCTAAAGTCACAAAGTCACAGAAATACATTCTAAACTCTAAAATGTGTTCTAAAGTAGGGATAGGCATTAGAAATAATATCATGACATTTTATCGGATATCCAGATAGTTTTAATCATGGACACTTGTTTGCTGTGCAGCCTGCAGGACTCGGGAGATACTGTGTGGACAGGGACCAGGGGTGTGCgacaaaggagggagagaaaaagtagCCCCTGACTCGCGCTAGTTAGACACTTGTAAATGCCATAGGTTATCTATCATCCAATATGGCAGATTAAACAGCCTATACTGAAGGTTGCTCATTGTAGGCTACTCCTCATTTAGTTGACTTAATTCTGTCATTTTAATTCAACTTTTCTTTCATTGCTTTGAGATCTCCCACTTCACGTTGCTACACATGGAGCCTCTGACTGTAGTGTCAACAACAGCAAGCTAAGTGAAAcctgtgtaggctactgtatgtatttttaaAACTATATTCACATTATTAAATGAAGAATTCCAAATGTCATGAGTGTAGAAATGTCCCATAGATCATTTTATTCCGTTAAGATGAAGCCTTGTCATTGTTGAAATAGGCCTGTGTATACGAATACTAATGTCTGTTTGAATAACTGTGCCCATTGCTAGTTTTTACAGGTTGTCAGATCAAGGTAGTTTGGGTTTTATATCGCTACAGGTTGTGTTGACAAAAATGAATGTCTTTATTTTAAATGAAGTAGTATACAGGAGGCCTTTCATTTACTTGAGATTGATTGTTTTTCTCTCCACTTTTTAATGTTCTGTCTTAATTTTGGGGGGAAAGTATTAGGATATTAACATGGAGTTGCACTGAGATTCTTGTTGTTTGGGGTGTTTACTTTTGTATTTTGCCTGCAATTTGTTTGTCAAATTATATATGATCATAAACGTAAGAAACACTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1957019 lncRNA upstream 1558 12771599 ~ 12842545 (+) True LOC118943029
TU1957029 lncRNA upstream 72716 12770722 ~ 12771387 (+) True G1708492
TU1956928 lncRNA upstream 111161 12712997 ~ 12732942 (+) True G1708410
TU1957035 lncRNA downstream 25276 12885644 ~ 12885849 (+) True cmas
TU1957165 lncRNA downstream 40915 12901283 ~ 12907083 (+) True G1708602
TU1957212 lncRNA downstream 100093 12960461 ~ 12960856 (+) True G1708643
TU1957215 lncRNA downstream 104173 12964541 ~ 12964769 (+) True G1708646
TU1957219 lncRNA downstream 118763 12979131 ~ 12979348 (+) True G1708650
XR_005038765.1 mRNA upstream 1581 12842382 ~ 12842522 (+) False LOC118943029
XM_036956941.1 mRNA upstream 6866 12829169 ~ 12837237 (+) True LOC110516535
XM_036956935.1 mRNA upstream 18349 12745862 ~ 12825754 (+) False LOC110490810
NM_001124190.1 mRNA downstream 7120 12867488 ~ 12885770 (+) False cmas
XM_036956948.1 mRNA downstream 110545 12970913 ~ 12974793 (+) True LOC118942885
XM_036956956.1 mRNA downstream 154798 13015166 ~ 13030251 (+) False LOC110490630
XM_036956950.1 mRNA downstream 155479 13015847 ~ 13034215 (+) False LOC110490630
XM_036956953.1 mRNA downstream 155482 13015850 ~ 13034215 (+) False LOC110490630
TU1957013 other upstream 30375 12800768 ~ 12813728 (+) True LOC110490810
TU1957032 other upstream 58601 12784207 ~ 12785502 (+) True G1708495
TU1956882 other upstream 192526 12649686 ~ 12651577 (+) True G1708367
TU1956830 other upstream 259947 12578608 ~ 12584156 (+) True G1708323
TU1956462 other upstream 593979 12248028 ~ 12250124 (+) True G1708014
TU1957204 other downstream 91317 12951685 ~ 12952515 (+) True G1708635
TU1957288 other downstream 192165 13052533 ~ 13053969 (+) True LOC110490642
TU1957306 other downstream 239473 13099841 ~ 13101833 (+) True G1708702
TU1957974 other downstream 895818 13756186 ~ 13765456 (+) True G1709276
TU1958014 other downstream 1060190 13920558 ~ 13926350 (+) False LOC110499758

Expression Profile