RNA id: XM_036956954.1


Basic Information

Item Value
RNA id XM_036956954.1
length 3925
RNA type mRNA
GC content 0.44
exon number 6
gene id LOC110490630
representative False

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 13015166 ~ 13034215 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTAGGTAGTCGTTTGAGATGTAATAAGTGATTAGGAAACCCCTATCTGAGTTTAattttgaaaaacaagaaaacccGGAAACTGATTAAAACAACTTCCGTTTCTCACTGCCTGAACGGTATGTGGAGAGAGCGGCAACTCTAGACCGGGAAGTGGGGCATCTAAATCAAATCTAGCTAGCTTTTTTCAAGTATACCTTAGCTTCCTGTTGACTATTGTATGAGGCCGAGATGCAAAGTCAGGATCCATGCGAAAATTgtccccctcttcttcttccctctctgcGTCTTTTCATTCCACCACTGCGGCTTGTCTCTGCAGCCATGTGGCAAGTGGTTCAACGAGGAGACGTTCAAGATTATGGGATGCTGGAGGAGTTTGTCACCATGGTTACAGAGATTGTGCCAGAGCTTTTGAGTTGCAGTCAGAGGGCCCAACTCATTCTGGGGCTTCGAGCAAGGCTGGTTCTGGAGTTGTGTCGCACTGAGCAGACATTAGACCTCATGAATATTCAAAAACACCTGGACAGGATCCGATCCCTCACATCCACTGAGGAAGCAGAGAACGTGTTCCCTGTGGAATTTGGGCCCAAGTATGACACTGCAATACAGATGCTGATGTTAGAATTCCTTTCCAGACTTGAGAAGTTACTTCCCATACCAGACCTTGAACAGACTGCCACCTTGTTAAGTGCTGTCCCCTCTGCCCTGGAGAAATGTGTACAGTTTGTACCTGACCCCATACAATTGAGGACCCTGCTCCAGTACCACAGAAAACTTGGACATTTGGACTCCATCCGAACTCCATCATCCTTTGGTgacttcatcctctcctctctgtctcttcctccataCGTGCGAGTGGTGACTGCCCCACATGTAGACTCAGATACACAATCAGAAAGCATGAATTTGGAGGGAATGAAAGCAAGAGAGTTGTTGGAGAATCGGACAAAGGAAATCGATGTACTAGTCCCAGCAGATGAAGTTAGAAGATACATAATTACTGAGCCAGATTACGGTATGGacatggagtctgctgttggggAAAATGACAATCAAGCTGTCACTGGCTTGAATTTACTCAGACCATCACAATTAAAACGAAGCAAAAGGCTGCAGATTAAGAACATGTTTCCAAAACGACGGAAACCTCGAAAGACCGATTCTTCCGGGCGTGCAAACAAACAGCCATCATCCTCCAAGGGTCGGCCTTCCCCAAAGAAGTCATGCAAAAAAGGCCCATTCAGTAAGACATGTGAAGTGTGTGGGAAGACATTCACTCGAGTCACAGCCATGAAAAGGCATCAGCTAACCCACACTGGAGATCTCAAGTTTAAGTGCCTCATGTGTGAAAAAAGCTTCAGGGATGGTCATAATCTGAAGAGACACCAGAGGCGAGTTTGTGAAAAGGAGATAAACATGTTGGATGAAGATGAAAATGAGGAAGAGATCCCACAACCCTCAACTAGCAAATCTCAGATCCCATCACTCCTCAAGACTCCCTGTCCACCAGGGCCATCTCATCAAGGAACTCTGGACACTATCACAGCCACTAACACATGCTCTGTGTGTGGGCGGTATTTTGCTCGTACTTCCAGCTTGGTAAGGCACATGAGCTCCCACTCAAAAGAGCGTCCATTTGGGTGTGTCAATTGTGATAAGAGATTCAAGTATTCGTACGATTTGAAAAAACACCAGAGAGAATTGTGTCAGAAAATGACCCAGGGAGATTTGTGTCAGGATGTTGGTCAGAACATGGCACAACAAAAGAGTGGCCTGGAACCAGAGAAGGTCTTTCTTGCCACTGCAGAGAATCGAACCCAGGTAGATTCCAAAACCTGTTATGTCTGTGGTAAGATTTTGACTTGTACCTCACAGATGGAAAGGCACTTGAAATCTCACTCAAAGGCACGTCCCTTTAATTGTGCTATTTGTGAGAGAAGTTTTAAGTACAAAGATACCTTGAAGAAACATCAGGAAATCCTTGGCCACGAGGGCATCCTAGAAGACTTGGGTCAAAGTGTGGACCAGCAAGAAGTGGAAGTTAACACAGAGAGTTGCATCAGCCCTCTCACTACCAAGGAAAACGACACTGAGCCCCTTATCACGGCTGCTACTTCAGTGCCGACTCTCAAAGAACCCAAACCATGCACTGTGTGTGGGAAGATTTTTAACCGTGCTTCAGTTATGGCTATTCATATGAGATCCCATTCAGATGAGCGTCCTTATCAATGTGGCAATTGTGAACAGCGCTTCAAGTACATGCACAATCTGAATCAACACCAGAGATATATCTGTAAGGTGAACCGAGAAGAGTCCTCTCAGATGGTAGACCAGCACCAAGAGGAGGAGTCTTGTGAACTGGTGGCTGTTAAGGCTGATACCCCAGAGACATCTACCAGTCGACTACAACTGGTTCACTGGTGTAAaaaatgtggaaagtgtttcgaTGACATCTGTAATTTGAAGCAACACCAGGAAAGTTCATGCAAAGAGGAAAAAATAAAGGTGGTCTTCCAATGTGAAAAAAGAAAGGTGGTCTTCAAATGTGATGATTGTGGGAAGGACTTCAAAGGTTCATCATCCCTAAGGACACACAAGCGAATTCACAACCCATTCTATTGCTCTGATTGTGGAAGGGTCCTCCCAAACTCCATTGCCTTTGACAGACACAAGCTGATGCAGCACAAGGAAATCCAGTGTACCATGTGTGAGAAGACCTTTACCCTGTTGGGGCGTCTGAGAGATCACTATCTGCATCAACATAAATTCACAGGACCATACCCCTGCTCTCAATGTGAGAAAACTTTTACCCAGTTAAGATACCTTGTTGAGCATGAGAGGGTTCATTCAGGAGAGTACCCTTACCAGTGCTCTGTTTGTCAAGCAAAGTTCAATAAAGCAAATTCTCTAACAATACACAGTAGGAagcacacaggagaaaagccgtTCCTGTGCTGGCAATGTGGAAAGAGTTACAAGGATCGTGGAAACCTGTCAATGCATATGGGGACCCACTCAGAGGAGAGACCATTTTCTTGTTCGCAGTGTGACATGACTTATCGGACAAAGATTCAGCTGAATACACACATTGAACAAGTTCATGAGGGGGTGAGATACACCTGTGCAGTCTGTGGAAAGCAGTTTTTGAAAGCTGTGTCATTGATAAGACATGAACTCACTCACACAGGAGAAAGACCATGGCCATGTTCCTATTGCACAAAAACCTTCATCACTGCCAATGAAAGGAGATTGCATGAAAGATACCATACTGGTGAGAGACCATATAAATGCCAAGACTGTGGAAAGTCATTCGTACAGTTATGTTTTCTGAAAGCACACCAACGacttcacacaggagagaagccatttGCATGCAGTGTTTGTGACAAACGTTTCAGATTAAATTACCATAGGCAAAGACACGAGCAAACCCATACAGGAAAACAGAAGCCACATGTTTGTGCGGAATGTGGGTTAGCTTTTGCTCAAAGAAAGCGCCTGACTGAACACCAATGCACTCACTCCTtgaattaattattattattattttaagtcTAATGTTCCTTTGCGTTGTTATTCATTTTAAGACAGTACAGTGGGGAAAGTAGTGAGGGAGACAAATTAGGGGCACAGACAGAAAGAAGGGCAGAGAAGAGTCTTTTGAACCCTCGTCACCAAGTACCACTCTGTTAGACTCAGGCATTTGAGTTCTTGTTGTGtactaaaaataaaaacacaggtTTACACCTCAGGTTTGAATTAATATTCTATTTTTCAGCTTTGTTTCATAATTCTGTGGATAATTTCCATTGCTAATTTGTAGTATGTATAGTAAAGGAGAACGTGTAAACTGTTATTCTCAAATAACCACAACATTGCATTTTGTGATCATGGCAATAATAAAGGAGGACATGAAAATA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1957260 lncRNA upstream 16199 12999450 ~ 12999709 (+) True G1708674
TU1957221 lncRNA upstream 33139 12982489 ~ 12982769 (+) True G1708652
TU1957220 lncRNA upstream 33704 12981778 ~ 12982204 (+) True G1708651
TU1957219 lncRNA upstream 36560 12979131 ~ 12979348 (+) True G1708650
TU1957215 lncRNA upstream 51139 12964541 ~ 12964769 (+) True G1708646
TU1957275 lncRNA downstream 49641 13074929 ~ 13079923 (+) True G1708683
TU1957295 lncRNA downstream 58505 13083793 ~ 13085231 (+) True G1708695
TU1957305 lncRNA downstream 73706 13098994 ~ 13099601 (+) True G1708701
TU1957318 lncRNA downstream 92443 13117731 ~ 13118685 (+) True G1708712
TU1957338 lncRNA downstream 121982 13147270 ~ 13147502 (+) True G1708730
XM_036956948.1 mRNA upstream 41115 12970913 ~ 12974793 (+) True LOC118942885
NM_001124190.1 mRNA upstream 130138 12867488 ~ 12885770 (+) False cmas
XM_036956944.1 mRNA upstream 155540 12844103 ~ 12860368 (+) False LOC118942883
XM_036956951.1 mRNA downstream 338 13025626 ~ 13034215 (+) False LOC110490630
XM_036956955.1 mRNA downstream 4650 13029938 ~ 13034215 (+) True LOC110490630
XM_036956958.1 mRNA downstream 11944 13037232 ~ 13051496 (+) False LOC110490636
XM_036956962.1 mRNA downstream 12388 13037676 ~ 13043327 (+) False LOC110490636
XM_036956957.1 mRNA downstream 12391 13037679 ~ 13051496 (+) False LOC110490636
TU1957204 other upstream 63393 12951685 ~ 12952515 (+) True G1708635
TU1957013 other upstream 202180 12800768 ~ 12813728 (+) True LOC110490810
TU1957032 other upstream 230406 12784207 ~ 12785502 (+) True G1708495
TU1956882 other upstream 364331 12649686 ~ 12651577 (+) True G1708367
TU1956830 other upstream 431752 12578608 ~ 12584156 (+) True G1708323
TU1957288 other downstream 27245 13052533 ~ 13053969 (+) True LOC110490642
TU1957306 other downstream 74553 13099841 ~ 13101833 (+) True G1708702
TU1957974 other downstream 730898 13756186 ~ 13765456 (+) True G1709276
TU1958014 other downstream 895270 13920558 ~ 13926350 (+) False LOC110499758
TU1958004 other downstream 921357 13946645 ~ 13950916 (+) True LOC110499758

Expression Profile