RNA id: XM_036956962.1


Basic Information

Item Value
RNA id XM_036956962.1
length 3910
RNA type mRNA
GC content 0.45
exon number 7
gene id LOC110490636
representative False

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 13037232 ~ 13051496 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GGTGCAAACGCAACCGGAAATTGAACGGACTACGTTCAGTGTCACACTCAATGCTACCGACGGTTAGGTTTTAAAACTGTTGTAAGCCTTTTAACTTTGGAAACCGTCTTTATAACAAACACTTAGCTAATTTTCAAGCTTCGTGCGTGAATACTTTTGTATGAGGACGAGATGCAATGTCAAAATCCCAGCGAAAATGGTATTGCGGATTTGTTTTCACTAGACTTGGTGTGCTTGATGTTCAACATGGCGTATCCTCGCTAAATTTCCgtccccctcttcttcttccctctctgcGTCTCTTCATTCCACCACTGCGGCTTGTCTCTGCAGCCATGTGGCAAGTGGTTCAGCGAGGAGACGTTCAAGATTATGGGATGCTGGAGGAGTTTGTCACCACGGTGACAGAGATTGTGCCAGAGCTTTTGAGTTGCAGTCAGAGGGCCCAACTCATTCTGGGGCTTCGAGCAAGGATGGTTCTGGAGTTGTGTCGCACTGAGCAGACAGCAGACCAAGACATTCAGCAACACCTGGCCAGGATCCGAAGCCTCATATCCACTGGAGAAGCAGAGTCAGGTGATGCTGAGGTGGAATTATCTGAATCAAAGTTTGTGGAGCTGGTTGAATCTCTGCTGAAAGACCCCAGTGAAAGGGAGAACTTCTACCAGAACGTGTTCCCTGTGGAATTTGGGCCCAAGTATGACACTGCAATACAGATGCTGATGTTAGAATTCCTTTCCAGACTTGAGAAGTTACTTCCCATACCAGACCTTGAACAGACTGCCTCCTTGTTAAATGCTGTCCCCTCTGCCCTGGAGAAATGTGTGCAGTTTGTACCTGACCCCATACAATTGAGGACCCTGCTCCAGTACCACAGAAAACGTGGACATTTGGATTCCATCGAAACTCCATCGTCCTTTGGTGactacatcctctcctctctgtctctccctccacatgTACGTGTGGTGACTGCCACAGAAGTAGATTCACAATCAGAATGTTTGGCTAGAGTGGAAGGAAAAGGGTTGGTGGAGGGTACAATAGAGAAAAATGGAGGACTACTTgcaccagatgaagatcaaagAGACGCATTTACTGGGAAGGAGCTTGCTATGAATAGGAAGCCTGTAAGTGTGGAAACGGACAATCAAGTTGTCACCGGAATTCATGTTCAAACCTCAAAACAAAGCAAGAGGCTGCAGATCAAGAAAATACGGTCAAAAGTACAAAAACCATGTAAAACGGATTCTTCCGAGCGTGCAATCCAACAGCCATCCTCCTCCAAGGTGCACACCTCCCTGAGGAAGTCATGCAAAAGAGGCCCGTTCAGGAAGACATGCCCCAACTGTGGGAGGACTTTTGCTCGTGCCACGTCCTTTAGAAGGCACCAGCGAAGCCACACTCAAGATCATGATCATAGGTTTAAGTGCCTCAAATGTGCAATAGGCTTCAAGGATCTTTATGATCTGAAGAGACACCAGCAAGGAGTTTGTGAAAAGAACCTCTCAACTTTGGTTGATTGGGAAAATAAAGAAGAGATCCCACAACCCTCAACTAGCAAATCTCCGAACACATCACCCCTTAAGACGCTCTCTCCATCAGGGCTAACACAGAAAAGACCTCTGGACACCAAAACATGCTCTTTGTGTAGGAGGTTTTTCACTCGTACTTCAGACATGGCCAGGCACATGAGATCCCACTCAAAAGAGCATCCATTTTGGTGTGTAAATTGTGATAAGAGATTCAAGTATTCATATGatttgaagaggcaccagagagaTTTGTGTAAGAAAGTGAACCAGGAAGATTTAGGTCAGGTTGGTCAAAACTTGTCACAACAGAAGGGGAAACCACAGCCAGAGAAAGATGAATCCCAATCAATGGGTAGCACTGGGTCTCTTGGCACTGATGAAAACCCGCAACCATCTCACAAAGGGCTGTCCGACTCAAAAACCTGTTGTGTCTGTGGTAGGATTTTGACTCGTACCTCAGACATGGAAAGGCACTTGAAATCTCACTCAAAGGAGCGTCCCTTTCATTGTGCTATTTGTGAGAGAAGTTTTAAGTACAAAGATACCTTGAAGAAACATCAGGAAATCCTTGGCCACGAGGGCATCCTAGAAGACTTGGGTCAGAGTGTGGACCAGCAACAAGCGGAAGTTAAAACCGAAGGTTGCAGCAGTCCTCTCACTACCAAGGAAAACGACACTGGGACCCTCATCACAGCTGCTACTTCAGTGCCGACTCTCAAAGAACCCAAACCATGCACTGTGTGTGGGAAGATTTTTAACCGTGCTTCAGGAATGGCTATTCATATGAGATCCCATTCAGATGAGCGTCCTTATCAATGTGGCAATTGTGAGCAGCGCTTCAAGTACATGCATGGTTTAAAGAAACACCAGAGGGATATCTGTCTGAAGGTGAACCAAGAAGAAGCATCTAAGTTGGTGGACCAGCAACAAGAGGATGCTactccagaggaggctggtgaacTGCTAGCCACTGATGACACAAGGGCAGAATGCAAGGAGGAAGAAAGAAAGGTGGTATTCAAATGTGATGAATGCGACAAGGAATTCAAAGGCTCATCCTCCCTAAGAACACACAAACGAATTCACAATCCATTCTATTGCTCTGATTGTGGAAGGATCCTCCCAAACTCCATTGCCTTTGACAGACACAAGCTGATGCACAAAGAAATCCAGTGTACCATGTGTGAGAAGACCTTTACCCTGTTGGGGCGTCTGAGAGAACACTATCTGCATCAACATAAATTCACAGGCCCATACCCCTGCTCTCAATGTGAGAAAACCTTCACTCAGTTATCGTACCTTGTCATCCATGAGAGGGTTCACTCGGGAGAGTACCTGTACCAGTGTTCTGTTTGTCCAGAAAAATTCAGAACAGCCAATTCTCTAACAATACACAGTAGGAagcacacaggagaaaagccgtTCCTGTGCTGGCAGTGTGGAAAGAGCTACAGGGCCGCTTCTGAACTGTCGGTGCATATGGGGACTCACTCAGAGGAGAAACCCTTTTCTTGTTCGCAGTGTGACATGACTTATCGGACAAAGATTCAGCTGAATACACACATTGAGCAAGTTCACGAGGGGGTGAGATTTACATGTACAGTCTGTGGAAAGCAGTTTTACAAAGCAGTGTCATTAAAAAGACACGAACTCACTCACACAGGAGAAAGACCATTTCCATGCTCCTATTGCGAAAAAACCTTCATCACAGCAAATGAAAGGAGGCTGCATGAAAGATACCATACTGGTGAGAGACCATACAAATGTCAAGACTGTGGAAAGTCCTTCATCCAGTCAGGTTACCTGAAATCACACCAACGacttcacacaggagagaagccatttTCATGCAGCGTTTGTGACAAACGTTTCAGATTTTCTCATCATATGAAAAGGCACCAGAAAACCCATACAGAGAAGCATGTATGTGGGGAATGTGGGGAATCTTTCACCCAAATTCGATGCCTCAAGGCTCACcaactcactcactccctcaatGAAAATTGAGTCACTGTTGTACATTTGCATATCAGTtgttgaatgttttttttaatttttattttggaTAGATTTAATAACTAGGTCCGTCAGATTAGTTAAGTGGATATTTTGAATAGATCATCTAAAATGTTGTGTAGAGTCGGCTGCAAGTATTGATTGTAAGTCATTTGTAAAGAGAATCTAAATGACCAATGGGCAACTGAATTTACTTGATGGACAAATCCAcccaaaaacatatattttggaatttgtttcattagtccattgttgacgtacagtgcatttgaaaagtatttagaccccttgacattttgttacattacggctttatttaaaaaaaaatgtttttccccctctaatctaaacacaatacc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1957260 lncRNA upstream 37967 12999450 ~ 12999709 (+) True G1708674
TU1957221 lncRNA upstream 54907 12982489 ~ 12982769 (+) True G1708652
TU1957220 lncRNA upstream 55472 12981778 ~ 12982204 (+) True G1708651
TU1957219 lncRNA upstream 58328 12979131 ~ 12979348 (+) True G1708650
TU1957215 lncRNA upstream 72907 12964541 ~ 12964769 (+) True G1708646
TU1957275 lncRNA downstream 31602 13074929 ~ 13079923 (+) True G1708683
TU1957295 lncRNA downstream 40466 13083793 ~ 13085231 (+) True G1708695
TU1957305 lncRNA downstream 55667 13098994 ~ 13099601 (+) True G1708701
TU1957318 lncRNA downstream 74404 13117731 ~ 13118685 (+) True G1708712
TU1957338 lncRNA downstream 103943 13147270 ~ 13147502 (+) True G1708730
XM_036956953.1 mRNA upstream 3461 13015850 ~ 13034215 (+) False LOC110490630
XM_036956964.1 mRNA downstream 2402 13045729 ~ 13051496 (+) False LOC110490636
XM_036956965.1 mRNA downstream 2409 13045736 ~ 13051496 (+) False LOC110490636
XM_036956963.1 mRNA downstream 2412 13045739 ~ 13051496 (+) False LOC110490636
XM_036956966.1 mRNA downstream 2724 13046051 ~ 13051496 (+) True LOC110490636
XM_036956968.1 mRNA downstream 8520 13051847 ~ 13058457 (+) False LOC110490642
TU1957204 other upstream 85161 12951685 ~ 12952515 (+) True G1708635
TU1957013 other upstream 223948 12800768 ~ 12813728 (+) True LOC110490810
TU1957032 other upstream 252174 12784207 ~ 12785502 (+) True G1708495
TU1956882 other upstream 386099 12649686 ~ 12651577 (+) True G1708367
TU1956830 other upstream 453520 12578608 ~ 12584156 (+) True G1708323
TU1957288 other downstream 9206 13052533 ~ 13053969 (+) True LOC110490642
TU1957306 other downstream 56514 13099841 ~ 13101833 (+) True G1708702
TU1957974 other downstream 712859 13756186 ~ 13765456 (+) True G1709276
TU1958014 other downstream 877231 13920558 ~ 13926350 (+) False LOC110499758
TU1958004 other downstream 903318 13946645 ~ 13950916 (+) True LOC110499758

Expression Profile