RNA id: TU1957946


Basic Information

Item Value
RNA id TU1957946
length 350
lncRNA type sense_over
GC content 0.35
exon number 1
gene id LOC110500963
representative True

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 13698517 ~ 13725137 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tgtttgataccattccatttgctctgttctggtcgttatgagccgtcctccagtCAGAGGCCTCCACTGCTGTAGATGTTGTTCATGTACAGAaatctttctctttttttttaaaccaggaaTTATTTTTGTATATTGTATTCATATGTTTTTAATTATTACTTCAAAACATTGAAATGTTTAATTTAATGCCGCTTCTTATCATAAAATAATAATTACACTGCTAGTTTCTGTAGTTATCCGTCCGCTGCTTTGTAGGAAACCTTTTCTAACATTACAACACGTTGTTATTTTCACCGTGCTTACTACAGGCTGTATGTATGTTATGGGACAAACAGGGTTTCTCTCTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1957958 lncRNA upstream 2421 13722072 ~ 13722329 (+) True G1709262
TU1957947 lncRNA upstream 7726 13714682 ~ 13717024 (+) False G1709252
TU1957948 lncRNA upstream 7726 13714682 ~ 13717024 (+) True G1709252
TU1957882 lncRNA upstream 45620 13662237 ~ 13679130 (+) False G1709194
TU1957964 lncRNA downstream 23236 13748335 ~ 13751291 (+) True G1709268
TU1957970 lncRNA downstream 27045 13752144 ~ 13752842 (+) True G1709273
TU1957988 lncRNA downstream 45584 13770683 ~ 13771339 (+) True G1709286
TU1958039 lncRNA downstream 102833 13827932 ~ 13828788 (+) True G1709320
TU1958041 lncRNA downstream 111270 13836369 ~ 13836910 (+) True G1709322
LOC118942887 mRNA upstream 492924 13231075 ~ 13231826 (+) True LOC118942887
XM_021564127.2 mRNA upstream 495356 13227798 ~ 13229394 (+) True LOC110490653
XM_036956971.1 mRNA upstream 650381 13070036 ~ 13074369 (+) False LOC110490647
XM_036956480.1 mRNA downstream 13959 13739058 ~ 13748205 (+) False crp
NM_001124725.1 mRNA downstream 14372 13739471 ~ 13748205 (+) False crp
XM_036956479.1 mRNA downstream 14558 13739657 ~ 13748205 (+) True crp
XM_036957001.1 mRNA downstream 69880 13794979 ~ 13950432 (+) False LOC110499758
XM_036957003.1 mRNA downstream 69884 13794983 ~ 13950432 (+) False LOC110499758
TU1957306 other upstream 622917 13099841 ~ 13101833 (+) True G1708702
TU1957288 other upstream 670781 13052533 ~ 13053969 (+) True LOC110490642
TU1957204 other upstream 772235 12951685 ~ 12952515 (+) True G1708635
TU1957013 other upstream 911022 12800768 ~ 12813728 (+) True LOC110490810
TU1957032 other upstream 939248 12784207 ~ 12785502 (+) True G1708495
TU1957974 other downstream 31087 13756186 ~ 13765456 (+) True G1709276
TU1958014 other downstream 195459 13920558 ~ 13926350 (+) False LOC110499758
TU1958004 other downstream 221546 13946645 ~ 13950916 (+) True LOC110499758
TU1958344 other downstream 340750 14065849 ~ 14066683 (+) True G1709592
TU1958620 other downstream 809284 14534383 ~ 14537036 (+) True LOC118942889

Expression Profile