RNA id: XM_036956999.1


Basic Information

Item Value
RNA id XM_036956999.1
length 3897
RNA type mRNA
GC content 0.54
exon number 22
gene id LOC110499758
representative False

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 13794979 ~ 13950916 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AACAGAATGCTCACCATggtagcaggagagagagagagagagggagggacttgTGCTCTCCAGCACGctgtctctcgttccctctccccccttctctccagtgtgtgtgagagagctcaGTTGTTGGTCGTACCAGGGCTAGTCCTGTcacgcagcagcagcagccacgTCACCGCCAGGCAGCCGTCACAAGCTGCCTTAATTCCCAGTGATGACCCCGTCCTATTGACCCCAGGGAGAATGAGCCAGCGAAGCCAGGGGAAGgagcgagagaagagggaggagaaggagcgagagaagagggaggagaaggagcgagagaagagggaggagaaggagcgagagaagagggaggagaaggagcgagagaagagggaggaaaaggagcgagagaaggagaaggagcgagagaagagggaggagaaggagcgagagaagagggaggagaaggacagagaggagaagaaggagaaggacagagaggagaagaaggagaaggatggGAGCCTCCACACCCCCAGCAGAGATCACCTCGCCAGCCCCTCTTCCCTCAGCCCGGGTCTCAGCTACACCCATGgTTTCGACCGGGGGAAAGAAGATTCCCTGCCTCCGAAAGAGGACTCGTCTCACTCCATATCCAAGAGCAAGTCAGAGTCCAAGCTCTACAATGGCTCTGACAAGGATGTCTCGTCGTCCGGTAACAAGCTCACCAAGAAGGAGTCGCTCAAGGTACAGAAGAAGAACTACcgtgaggagaagaagagagccaCCAAGGAGCTCCTCAGCACCATCACAGACCCCTCTGTTATTGTCATGGCTGACTGGCTCAAGATCCGGGGTACTCTGAAGAGCTGGACCAAGCTGTGGTGTGTGCTGAAGCCGGGGGTTCTTCTCATCTACAAGACCCATAAGAACGGCCAGTGGGTGGGCACGGTGCTGCTCAACGCCTGCGAGCTCATCGAGAGACCCTCAAAGAAGGACGGCTTCTGTTTCAAACTCTTCCACCCGCTGGAGCAGTCCATCTGGGCAGTCAAGGGTCCTAAAGGAGAGGCGGTGGGTTCCATCACACAGCCATTACCCGGCAGCCACCTCATCTTCCGTGCCACCTCTGAGTCAGACGGCCGTTGTTGGATGGATGCTCTGGAGCTGGCTCTGAAGTGCTCCGGCCTCCTGAAGCGGACCATGATCCGCGAGGGCAAGGAGGAGCTGGCCAGCACGGCCGGGGAGAGCTCCCAAATTAACTTCTACAGTCTGCTGAGAGCCCACAACATGCAGGGTTTCCAGTTCAACGACAGTGACCAGTTCAAGGACCCTGACCTGTACTCAGACAAGTCGGACCGGGAGGGGGAGCAGGACCACGAGGAGTCAGACGTGGAGGGTCTGGGGAAGAGCGAGGAGAGTGACAGTGACACGTCGGAACGTCAGGATGACTCCTACATTGACCTTGACCCCAACGAGGCCCTGCGGGAGACTCCGTACCTGGAACAGTCCCACGAGGAGCTGGGAGAGGCTGGTGAGGCCTCCCAGACAGAGACGGTGTCGGAGGAGAATAAGTCTCTGATCTGGACGCTGCTGAAGCAGGTCAGGCCTGGGATGGACCTGTCTAAAGTGGTCCTGCCCACCTTCATCCTGGAGCCACGCTCCTTCCTGGACAAGCTGTCCGACTACTACTACCATGCTGACTTCCTCTCTGAGGCAGCTGTGGAGGAGAATGCCTACAACAGGATGAAAAAAGTAGTGAAGTGGTATATCTCTGGATTCTACAAAAAGCCACAGGGCCTGAAGAAGCCATATAACCCCATCATCGGTGAGACCTACCGCTGCATGTGGCTCCATAGCAAGACCAACAGCAAGACATTCTACATTTCTGAACAGGTGTCCCATCATCCTCCAGTGTCAGCGTTCTACGTCAGTAACAGGAAGGACGGCTTCTGTCTCAGCGGAAGCATCCTGGCCAAGTCCAAGTTCTACGGAAACTCCTTGTCGGCCATATTGGACGGAGAGGCTCGGCTCACCTTTCTCAACAGAGGAGAAGACTACGTCATGAACATGCCCTACGCCCACTGCAAAGgcATCCTGTATGGCACCATGACTCTGGAGCTGGCTGGCCAGATCACCATTGCCTGTGAGAAGACAGGATACAGTGCCCAGCTCGAGTTCAAACTCAAGcCGTTCTTGGGTAACAATGACAGTGTGAACCAGGTCTCTGGAAAGATCAAGCTGGGGAAGGAGGTGCTGGCTACGCTGGAGGGACACTGGGACAGTGAAATCTTCATCAACGATAAGAAGACCGGGGTGGTGGATACGTTTTGGAACCCCACTGCAGAGCTGCGTCAGAGCAGGCTGACACGCTGCACCGTGCCTCCTGAGGACCAGGGAGACTATGAGTCTGAGAGGTTATGGCAGCATGTAACGAGGGCCATCAACAACAAGGACCAGACAGAGGCCACCAATGAGAAGTTTATCCTGGAGGAGGCTCAGAGGAAGTCAACCCGCGAGCGCAAGGCCAAGTGTGAGGACTGGGCGCCCGGGCTCTTTGAACAGGACCCCGTCACCGGAGAGTGGCATTACAGATATGCCGAcaCCCGGCCGTGGGATCCGCTGAATGATATGATTCAGTTTGAGAAAGACGGCTGGATCCAGACTAAAGTGCGGCACCGCACCCCTATGGTACGTTCTGCCAGTGTAATTAGTCTCAGTAACCAGGGCCCCAGGAGGGATGGCAATTGCAAGTGCCAGGTGACAGGGCCCAAAAGAAAGCACAAGCACAGTGACAAGCCCAAGAAACCTGAGAGTGGCTGCTCCTCCCCAGAACCTGACCGCCAGGACTCCTCCGGCAGCGAGCGACACAAAAGCAAGCACAGTAGCCGGTTAAGGAAAAAGGGCCCAGACCTTAGTGAACTTCAAAGTGCCATTGATTCTATAAAGAAGACACAGGAGAACATTTACAAGAGCATCGGTGTGCTGCGCTCCCGAACGACAGTGGGCCAGGCGGCAGCAGAGGGCGGATTCCTGCAGCAGCGCGACTAcgccatcatcatcctcctcatcctccttcaggtCTTCATCAACTTCCTGTTCAAGTAGCAGccaacagactgacagagagagagacagatggagttagagagagagaccgatggagagagagagacatgactgaTGGGGGGGGTTGTCCAGGTTAAGGAGGAGAAACAGTCTGGAAGTGAATGAACTTCAAGAGCACCCAGTAGCTCtgcctcaaccctctctctctctctctctctactgagtTGACCCTGCTCCACTGTCCTCAGACGGGCCACCATTGTCACACACACGTCTCCAAAGCAAGCATTCCTGAAAGAGGCTCctcaaaaaaaactgaaatagttTTTAATTTCTATTTATTTGTACCTGTTTAAAGATCCATTTATTTTTAAAGGGGGAGTGGCACCGGCCAGGACTGAAGGGAAGTTGAGGTCAGCGTTCGGCCTTAGCCGGCGTCATGATGTCGTGAACTGGGCCTTGGAGAAGGGATTGACATCTGGCGGCCATTTTTAATTTTGCTAACGGACACCGCTCCTTGCATTTCACCCGCCTCCCCAACGACAGGGAACATTTTACACTGAGACTTTTGAAGAAAAGTTACTTTCAttcaataattttttttaaagactgttcatttgttttgtttgtttggtgTGTCCTTTGTGAGTAGAACCTCTAGTTCAAAAATATACGAGAAGGGAGAAGAACAGATTTAAGCGGTCCAATATATGCTTTGACAAGGCTCGAGTTTCCTAGCTTGACGGGGAATCGACAAACAAAAGAAGGTCATTGTAATCAATCGATTTGAATCGTTCCACTCAAATTTGTAGACCAGGTCAATTGTATAAACTAGATGCTTGACATGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1958042 lncRNA upstream 5494 13836675 ~ 13837221 (+) True G1709323
TU1958041 lncRNA upstream 5805 13836369 ~ 13836910 (+) True G1709322
TU1958039 lncRNA upstream 13927 13827932 ~ 13828788 (+) True G1709320
TU1957988 lncRNA upstream 71376 13770683 ~ 13771339 (+) True G1709286
TU1957970 lncRNA upstream 89873 13752144 ~ 13752842 (+) True G1709273
TU1958008 lncRNA downstream 701 13951133 ~ 13952185 (+) True G1709301
TU1958330 lncRNA downstream 108511 14058943 ~ 14059216 (+) True G1709580
TU1958334 lncRNA downstream 110362 14060794 ~ 14061124 (+) True G1709584
TU1958346 lncRNA downstream 116709 14067141 ~ 14067527 (+) True G1709594
TU1958359 lncRNA downstream 128362 14078794 ~ 14079007 (+) True G1709607
XM_036956480.1 mRNA upstream 94510 13739058 ~ 13748205 (+) False crp
NM_001124725.1 mRNA upstream 94510 13739471 ~ 13748205 (+) False crp
XM_036956479.1 mRNA upstream 94510 13739657 ~ 13748205 (+) True crp
XM_036956994.1 mRNA upstream 117578 13698517 ~ 13725137 (+) False LOC110500963
LOC118942887 mRNA upstream 610889 13231075 ~ 13231826 (+) True LOC118942887
XM_036957009.1 mRNA downstream 36800 13987232 ~ 14006808 (+) False LOC110516615
XM_036957007.1 mRNA downstream 36800 13987232 ~ 14006816 (+) False LOC110516615
XM_036957011.1 mRNA downstream 36800 13987232 ~ 14007450 (+) False LOC110516615
XM_036957010.1 mRNA downstream 36807 13987239 ~ 14006808 (+) False LOC110516615
XM_036957008.1 mRNA downstream 36807 13987239 ~ 14006816 (+) True LOC110516615
TU1957974 other upstream 77259 13756186 ~ 13765456 (+) True G1709276
TU1957306 other upstream 740882 13099841 ~ 13101833 (+) True G1708702
TU1957288 other upstream 788746 13052533 ~ 13053969 (+) True LOC110490642
TU1957204 other upstream 890200 12951685 ~ 12952515 (+) True G1708635
TU1957013 other upstream 1028987 12800768 ~ 12813728 (+) True LOC110490810
TU1958344 other downstream 115417 14065849 ~ 14066683 (+) True G1709592
TU1958620 other downstream 583951 14534383 ~ 14537036 (+) True LOC118942889
TU1958665 other downstream 705255 14655687 ~ 14657284 (+) True G1709824
TU1958684 other downstream 729050 14679482 ~ 14682208 (+) True G1709840
TU1959289 other downstream 1182700 15133132 ~ 15133588 (+) True G1710321

Expression Profile