RNA id: XM_036957030.1


Basic Information

Item Value
RNA id XM_036957030.1
length 3452
RNA type mRNA
GC content 0.46
exon number 6
gene id LOC110499776
representative True

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 14282052 ~ 14288120 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGTTGGATGCGATCCGTCAACCAAATCCTGAAGAAGATGACGAcgaagaaaaagaagaagcagCTGTTTATCCTCAGTCAGCACGGTTCATATTTACCTCAATAGTCACCACAAGATTTACGTGGTTTTCAGCTTGAAATGGCAATGAGTCAGTTTCCCTTCTGTGTAATAGCCTAGAAACGCTAAAGATTCGGTGTTGCACGTCTGGACCAAAGGCTCCGGTTGTTTTCGTCGCTGTTCTGGTGCTTTACGGTGCAGAAGGATATGGTTTTCTCATCGTCCCAGCAAGTGGTGGTCGCATTTACGGCGGTGTTGTTTGCGTTTGTGGTGTTCCCTAGAATGTTCGGCGTAGGATCCGGAGCGAAGGAAACAAGAGGTTTTGATGCACGCTACAACAGAAAAGCGGGTCCGGGACCAGGACCGGGTGCAGTGAGAGGGCAGCCGGTCAACAGGAACACTGCTGGCTCCATGAGCAAAGCACAGACCCTGGAGAACATGCAGCAGATGAAGGTGATGATGGAGCAGGAGATGAAGGGTGACAAATACAAAACCAACAGCAACAAGGGCTACGTGTTCACGCTGATGCCGCTCTACGCCATCGGAGTCGGCCTCTTTGCAGCGTACAAATTTCTGAAGATCAAGTCTGCAGATGACTCCCAAGCCCAAAAGAACAAGGATGCCAAAGGTCCCAAGAAGtcggaggagacagAGAATCAGCTTACAGAGCTGGAGCAGCGGCTAGCGCAAACAGAGAAGATGCTCAACTCCATTCTGACCCAACTGGACCCATTGACAAGTTGTGTCAAGTCTGTGGCCCAGGAACAGAAGAACGAGATCATGTCCCAACTCCAGTCCATCCGCCACCTGATGAAGAAGAGAGGCATGGACTGTCCATCCCTTAACATTGAAGAGCCGCAGTGCGAGAGGAACCTGGATGACCTCATCGAGTCTCTGGCAGCCCACGGCGACACCTCGCCAGAGGTGGTTGCTCCTGCGGAAGACGATCAAAGTGGtgtggtgaaagaggaggagccagtccaccagcagcaccacCCTGAATCCAAGGATGAGCACTCAGTGACCGACGCTGAGGAGGAGGACATGCCCTCCTTGGAGGATTCTTGTGAGACAAACATTGAGGACATAGGCCTAGCCCAGAACATTCCAGAAGAAATGCCTACAACTGGGCTCAGACGACGCAACAGGCTGGAATAAACCGAAAAAGAGGGTTGTTTTAAACTGTACATGAATAAAGCCATACATGTATTTTCTCATTCTTAATGGCACTACTGCAGTCTGTTCAGTAATGCTCTTGCTTTTGGCTCGCAGTTGAATAATAATTTGGTCCAAGGTTGTGTGTGATGAAGGTGATTATTTTTCTTCTGTTCCATCCCATAAAGCATAACAGATCCCTGGCTAGGCCAATGTGTAGGGTTAGGACTTACTCCTGACAAATAAAATCCCCAGAAGCCTAACTCCATATAACATTTGACTTAGGTCTGGAGGTTTTCCTTGTCAGGCCCCAAGTATGAGGCCTGAGTTTTCCATCCTTGAACCAAACGTTAGTTAGTATGTAAGGCACCTGTAAATGTGTTTTCATCACGTGACTGCTGCTTGGAAACCCTGTACATTATCATTATATGCTGCCATCTTTTAGAAGCGGTCATTTCAGCCCTAACTATCAAGACCTCAGTGTGTTATGCAATCTTGCAACTGCCATCCGTATGTCATAGAATagtcaaaataataaaaaatgtcaaACATAGTTAACTATAAATAGCTACATTTAGTTTTTCTACTACGTACTCGAGTCTACAAGTGCAAGCTTGTGACGTTTGGCTTGTATGATTTGCTTGTTTTCAGACATCTTATGCATGTGTTTTTCTCTGCAACTGATCTTGAATGTCCTGGTGGATAAAACTGCATGACTTCTCTTACTAGAGGGAGATGCAGGACAATCATGAATGTATTGATGACGTAGTCTAAATCAtgcctctccaaccctgttcctggagagctactgtccagtGGGTTTCTctataaccctgttcctggagtgctacTGTCCAGTGGGTTTCTCTattaccctgttcctggagagctactgtccagtGGGTTTCTctataaccctgttcctggagagctactgtccagtGGGTTTCTctataaccctgttcctggagagttacagtccAGTGGGTTTCTctataaccctgttcctggagagctactgtccagtGGGTTTCTctataaccctgttcctggagtgctacTGTCCAGTGGGTTTCTCTattaccctgttcctggagagctactgtccagtGGGTTTCTctataaccctgttcctggagagctactgtccagtGGGTTTCTctataaccctgttcctggagagttacagtccAGTGGGTTTCTctataaccctgttcctggagagctactgtccacTGGGTTTCTctataaccctgttcctggagagctactgtccactgggattctctataaccctgttcctggagagctactgtccagtGGGTTTCTCTATTACCCTGTTCCCCGAGAGCTACTGTCCAGTGGGTTTCTctataaccctgttcctggagagctactgtccagtGGGTTTCTctataaccctgttcctggagagctactgtccagtGGGTTTCTctataaccctgttcctggagaattACAGTCCAGTGGGTTtctctccaaccctaatctagcacacgtgttcctaataattagctggttgataagggGAATCCAGTTAGTTATAAGGGGTTTGTGGGAACCTACCGGAGGGTAGCTCTTCAGGAGCAGAGTTGGAGAGACCTGGTCGGAATTAATTTGTGTTAGTCTAGTTATGTAGTTCAGATTAAGCACGATGTGTGTATTTAGCCAACACAAACATGCATTCTGCTCTGTTTTATATTTGTTTCCTTTTTAAGTATTTTATGTGATCTATCGTTGACTGTAGTTAACACAGAAGTTAGCCTCTGGTTAGAACCAACCCAGTGAAACTACAGGATAGAACAGAAATCAAATTATCTCATTGGTTTTGTCTTAAATTGAACcctacctattccctatatagtaggcctctggtcaaaagtagggaatatggtgacatgatctgtgtagtaatactgTACCAGCAATCAAATAATCACGTTTGTGTAGAAATGCTGTACCACAAGACTTTTCAAAACACTGACAAATATCTTGTCTTGTGATAACTATAGCTTTGGAGCAAATGTTTAGCGAACACACAATTCATATATCTGGAAACTATAGAAACACTGCGATGTTTGTCTCCTGTTTGAGAGGTCATTTGTTCGGCTAACTCTATTTATTTTGTGTAGCTGTGCTCTTGGGCATAACTGAGGAATGTTGAAAGATGGGAGAAAATGTTCCACTCCTTACTAGAAAATAAAGGTGCTATGTGGCAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1958478 lncRNA upstream 12382 14269445 ~ 14269670 (+) True G1709690
TU1958476 lncRNA upstream 13391 14268336 ~ 14268661 (+) True G1709688
TU1958474 lncRNA upstream 14672 14267156 ~ 14267380 (+) True G1709686
TU1958391 lncRNA upstream 24880 14177668 ~ 14257172 (+) True G1709632
TU1958421 lncRNA upstream 30446 14141472 ~ 14251606 (+) False G1709648
TU1958504 lncRNA downstream 20507 14308627 ~ 14308994 (+) True G1709708
TU1958536 lncRNA downstream 102163 14390283 ~ 14391796 (+) True G1709735
TU1958545 lncRNA downstream 127347 14415467 ~ 14415743 (+) True G1709743
TU1958551 lncRNA downstream 138626 14426746 ~ 14427138 (+) True G1709749
TU1958558 lncRNA downstream 142100 14430220 ~ 14440159 (+) True G1709751
XM_036957016.1 mRNA upstream 154466 14116546 ~ 14127586 (+) False LOC110499766
XM_036957014.1 mRNA upstream 166257 14103817 ~ 14115795 (+) False LOC110500967
XM_036957013.1 mRNA upstream 166257 14103818 ~ 14115795 (+) True LOC110500967
XR_005038535.1 mRNA upstream 263742 14017709 ~ 14018310 (+) True LOC118942888
XM_021576825.2 mRNA upstream 265809 14013772 ~ 14016243 (+) True LOC110499761
XM_036957031.1 mRNA downstream 7847 14295967 ~ 14374190 (+) False LOC110499784
XM_036957033.1 mRNA downstream 7850 14295970 ~ 14378043 (+) True LOC110499784
XM_036957035.1 mRNA downstream 190135 14478255 ~ 14482429 (+) True LOC110499786
XM_036957036.1 mRNA downstream 200298 14488418 ~ 14493003 (+) True LOC110499788
XM_021576851.2 mRNA downstream 226299 14514419 ~ 14533522 (+) False LOC110499790
TU1958344 other upstream 215369 14065849 ~ 14066683 (+) True G1709592
TU1958004 other upstream 331136 13946645 ~ 13950916 (+) True LOC110499758
TU1958014 other upstream 355702 13920558 ~ 13926350 (+) False LOC110499758
TU1957974 other upstream 516596 13756186 ~ 13765456 (+) True G1709276
TU1957306 other upstream 1180219 13099841 ~ 13101833 (+) True G1708702
TU1958620 other downstream 246263 14534383 ~ 14537036 (+) True LOC118942889
TU1958665 other downstream 367567 14655687 ~ 14657284 (+) True G1709824
TU1958684 other downstream 391362 14679482 ~ 14682208 (+) True G1709840
TU1959289 other downstream 845012 15133132 ~ 15133588 (+) True G1710321
TU1959855 other downstream 1191028 15479148 ~ 15490871 (+) True LOC110499821

Expression Profile