RNA id: XM_036957046.1


Basic Information

Item Value
RNA id XM_036957046.1
length 3235
RNA type mRNA
GC content 0.49
exon number 20
gene id LOC110490791
representative True

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 14549517 ~ 14565204 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATTTAGAATGGGCACAGGACATGACACAGAGTCACTACACATCCCAGAATGCAGTCGATGGAGAAGGACAAGATATGATGATCTACAATTCCCACGAGTTGTTTAGATACATGCATGTATGTCATCAATGGTTAGGAAGCGCACAGAGAAACGCTGAAGAACGGGATTGAGTTGATAAAACCGGCGTGGTGTTATCTCTATGGGAATTATAATCAATAATAATGTCCCACATTAAAGCTCCTATTGTTGATACGGAGAGGCGTAGGCGGAGGTCCACGGCTGAAAGTTCAGATACCCAATGGGACCATGACCCCAGGGTCTACCGCCGTACATCCCAGTGTGACCGACTGTGTGTGGACATTGGCAGTCATGTGGCCGAAACCCCTTCCCCAGATGTCTCCCACCAATACACCCCCAAATGTTTGTCTGCACACAAAGGAGGCACCACTCCATGTCACTATGGGGAAGAGGTTTGGCAGGATGGCTCGAGCTTGAGGACCACCATCCGAGCAGAGAATGAAGTCGAGGCAAACAAACTGGCCAACAACTACAGGTTTGGCTTCAGAAAGTGGAAGAGTCACGTGACTGAGAGGCCCATCGAGGACAGGTCGGACATTGTGAGGGAGCTGTACTCAGAGCTGAACTTTGTCAGACCCCAAGGTTCATTGATCACTTGTGGAAACATCGCATACTTGATTTTATTTGGATGGTGGATCTCTTTAGCCTACCTCTTGGTCTGTCTCCTAATGTTTCTGACCATCATTGGAGTTCCTTATGGGAAGCTGTGTTGGAAGTTATCATGCTACTTTCTGTGGCCCTTTGGGAAGTCCATACTAAAGCCCAGAAGCCTGGTCAGGCGATGCTGTGTGAAGTTCCCTCACTGCGAGGCCATCCCAGAGGAATCTGACTCAAAGGAGGTGAAGGAGTCTACACCCCTGCTCATGCCCCCTTCTGTCCCCATCGAGGTCCCCCCACAACGGACGCGTTACTGGTGTCGTGTCAGTACCTATGTGTGGTTGTTGCTAGGCTACCCTCTCCTGGGGCTGATCCACAGCCTGGCCTGCTTCCTCTCCTGGATCCTGGTCTTCACCATCCCCGTGGCCAAGATGAATGCCCGCACCCTGGCCATCATCCTCCTCATGCCCCCTGAGGACGTCCACATCCACCGGCTGAAAAAGCCGCAAGGGTGTGATAGCCAAGTGCTTCTCTGTTGCTACCACGCCTTCAACTGGTACTACTACAAATACACCTTGGACGGAATCAATGTGTTCGCTGTCAACCTGCTGCCCCTGGTCATCACAACCCTGGTGGTCGGCTACGTGGACACAGAGAACCAGTTTGTCAGCTCGGAGGCCAAGTTCGCCGCTGCCGTCAGCTCCATCATCCCACTGTCTTATTATATTGGCATGGGCATCGCCAGtatctCAGCCCAGAGTAACTTTGCGGTGGGAGCAGTGGTTAACGCCACGTTTGGCTCCATCACAGAGATGACCTTCTACATCACTGCCCTGTTGAGGGGTCACAAGGCCGGCACCAAGTGCTATGAGGAGATCGTCAAGGCTGCTCTCACTGGAACCCTGCTGGGCTGTATTCTCTTTATCCCAGGTATCAGCATGATCATCGGGGGCTTTAAACACAGGGAGCAGAGGTTCAACAGCCGCTCTGCAGGGGTCAGCTCAGCACTGCTCTTCATATCAGTAGGAGGCGTATTTGCCCCAACCCTGTTCTCCAAGGCCTACGGTAGCCTGGTGTGTGCGGGCTGCTCTAGCTCTCAAGCCAACACCAGCGGGCCCTTTACCTGTATGGACTGCCACTATGACATGAGTGGAAGTAACGAACCCTTATATCTCAGACATATTGAGCCTCTGGTATACACCATCTCCGTGTTGCTGCCCTCCGCCTACCTGATTGGCCTCATCTTCACCCTGAAGACCCACTCCCACATCTACGACATCCAAGTCAGTGACGTGCACGACCACCACCAGGGTCAGTGCCCACCGGGGGGCGCCAGCGgtggtcaCGGTACTGTCCACTGGTCCAGGTTGAGGGCTCTGTCTGTGCTGATCATGGCCACGCTGCTAATGGCTGCCTGTGCCGACCTCACCACGGAGCACATCAAACCCATCCTCGACCACTCCGCCATCTCCCAGTATTTCATCGGCGTGACCGTGTTGGCGATGGTGCCGGAAATTCCCGAGATCTTCAACGGAATCCAGTTTGCCCTGCAGAATAACATCAGCCTCAGCTTGGAGGCGGGAAACTGCATAGCAGTGCAAGTCTGCATGATTCAGATTCCCTTACTCATCTTGTTCAACACTTTTTATGATGTGGGATTCGTGCTCCTGTTCAGTGACTTGCATCTTTGGGCCAGCATCTTTAGTGTGATTGTGGTCAACTACATTTTCATGGATGGCAAGTCTGACTACTTTCAGGGGACTGCTTTGGTGGTGGTTTACCTCATTCTACTGGCGTTGTACTTTTTCGCCCCATCACCCCACGCCTGTTGAGCTGCTCTGCAAAGAACAAACTTCAACTCCTAGAGTCCTTTCAGTCACTATTTACAGGAGCTGCTTTGTTTGTGTTAACTATTTCGATGCCATGTCATATTCATAAGGGCTCGCAGCGGGAACTCCAGGTAGTCCCTCTCTGTTGCAATCTGTTTTCTTCCttttgtgcctaatgaacatgacccagttcTGGGCATCAATGGCCCTTTACCTTTGGAATTATTTGCATTATGACTTCCAAATTAACATTCCTATACTGCACATCCGGGGTGTATGTGAACTATATGTAGGAGATGTGTTTTCAGTAGGAGTTTGGTAGATTAAAATGCATATGTTAAAGCAGGGTATGTTAATATTGAATTTATAAAGTGGTCACAATTGTGCTTCACATTCATTGGCCTTTGGTTATTAAGCTGGATTCATATGGACCAAAAACATCTACACATGGTGTAATGCTAGGATTTGTATGGACCAAAAACATCTACACATGGTGTAATGCTAGGATTTGTATGGACCAAAAACATCTACACATGGTGTAATGCTAGGATTTGTATGGACCAAAAACATCTACACATGGTGTAATGCTAGGATTTGTATGGACCAAAAACATCTACACATGGTGTAATGCTAGGATTTGTATGGACCAAAAACATCTACACATGGTGTAATGCTAGGATTTGTATGGACCAAAAACATCTACACATGGTGTAATGCTAGGATTTGTATGG

Function

GO:

id name namespace
GO:0055085 transmembrane transport biological_process
GO:0014032 neural crest cell development biological_process
GO:0006816 calcium ion transport biological_process
GO:0012505 endomembrane system cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K07300 chaA, CAX; Ca2+:H+ antiporter

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1958616 lncRNA upstream 16341 14532924 ~ 14533176 (+) True LOC110499790
TU1958617 lncRNA upstream 16770 14532207 ~ 14532747 (+) False LOC110499790
TU1958633 lncRNA upstream 25573 14523386 ~ 14523944 (+) True G1709797
TU1958590 lncRNA upstream 26362 14508320 ~ 14523155 (+) True G1709776
TU1958636 lncRNA downstream 498 14565702 ~ 14567845 (+) True G1709800
TU1958643 lncRNA downstream 5242 14570446 ~ 14571075 (+) False G1709806
TU1958644 lncRNA downstream 5242 14570446 ~ 14571075 (+) True G1709806
TU1958641 lncRNA downstream 7338 14572542 ~ 14573998 (+) True G1709804
TU1958623 lncRNA downstream 53409 14618613 ~ 14626027 (+) True G1709789
XM_036957037.1 mRNA upstream 662 14533785 ~ 14548855 (+) False LOC118942889
XM_021576851.2 mRNA upstream 15995 14514419 ~ 14533522 (+) False LOC110499790
XM_036957036.1 mRNA upstream 56514 14488418 ~ 14493003 (+) True LOC110499788
XM_036957035.1 mRNA upstream 67088 14478255 ~ 14482429 (+) True LOC110499786
XM_036957033.1 mRNA upstream 171474 14295970 ~ 14378043 (+) True LOC110499784
XM_036957051.1 mRNA downstream 22356 14587560 ~ 14596988 (+) False LOC110519829
XM_036957052.1 mRNA downstream 22364 14587568 ~ 14596988 (+) True LOC110519829
XM_036957053.1 mRNA downstream 34876 14600080 ~ 14631285 (+) False LOC110490612
XM_036957054.1 mRNA downstream 34876 14600080 ~ 14631285 (+) False LOC110490612
XR_005038537.1 mRNA downstream 782236 15347440 ~ 15348708 (+) False LOC118942891
TU1958620 other upstream 12481 14534383 ~ 14537036 (+) True LOC118942889
TU1958344 other upstream 482834 14065849 ~ 14066683 (+) True G1709592
TU1958004 other upstream 598601 13946645 ~ 13950916 (+) True LOC110499758
TU1958014 other upstream 623167 13920558 ~ 13926350 (+) False LOC110499758
TU1957974 other upstream 784061 13756186 ~ 13765456 (+) True G1709276
TU1958665 other downstream 90483 14655687 ~ 14657284 (+) True G1709824
TU1958684 other downstream 114278 14679482 ~ 14682208 (+) True G1709840
TU1959289 other downstream 567928 15133132 ~ 15133588 (+) True G1710321
TU1959855 other downstream 913944 15479148 ~ 15490871 (+) True LOC110499821
TU1959941 other downstream 1157324 15722528 ~ 15737477 (+) True LOC110500994

Expression Profile