RNA id: XM_036957054.1


Basic Information

Item Value
RNA id XM_036957054.1
length 5156
RNA type mRNA
GC content 0.44
exon number 7
gene id LOC110490612
representative False

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 14600080 ~ 14631285 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TCGGCGGAGGGATAGCAGAAGCTTCAGGACAGTGAGAGCTCAGcagcgagagagaaggggtatACGTTGCTGCAGATAGAGTAGAGGACGTGGAAATATTTCGTTATACGCATTTGCGACGAAAGCAAATGTAAACTTTGGGATAATACAGCTAGACGTTTGAGCTGCCATCACTTTACGACTTGGTGTTCAACAGTGGAATATAAAAATGTCGTCTCCAAGTCCGGGTAAAAGGCGAATGGATACTGACGTGGTGAAACTCATCGAGAGCAAGCACGAAGTCACAATCCTCAGTGGACTCAATGAATTTGTAGTGAAGTTTTATGGACAACAAGGAACGTACGAGGGGGGCGTATGGAAGGTGCGAGTAGATCTACCGGACAAATACCCTTTCAAATCCCCATCAATAGGATTCATGAATAAAATCTTCCATCCCAACATCGATGAAGCGTCAGGAACAGTGTGTTTAGATGTCATCAACCAGACGTGGACAGCCCTTTACGATCTCACCAATATCTTTGAGTCGTTCCTGCCTCAGCTGCTGGCTTACCCCAACCCCATCGACCCGCTGAACGGAGACGCGGCCGCCATGTACCTCCACCGACCAGAGGAGTACAAACAGAAAATCAAAGAGTACATCCAGAAATATGCAACAGAGGAGGCTCtcaaggagcaggaggagggccAGGGCGATTCCTCATCGGAAAGCTCCATGTCGGATTTCTCTGAAGACGAAGCCCAGGATATGGAGTTGTAGTGATGGGAGACAACTCCCCTTTAAAACCACAGACTGTATGATTTCCTAACCATGAGAAAGCAGACATCATATTCATATAagttgatttttttattttattttattattattattattattgctaaaacAAGGATTTTTGTGGATATCAAGCCTCGGCGTATATCACACACCACCTGCTTTGTGTTTTTGCCATGTCCCAGTCGCGTTCTCCTCCTTCAATCCCTGTAAAGGTGTGTTGGACTTAGCAGTCCCCACATTCCACCGGTAGTTGGAATGTCCCCTTTGACCCGGTGACCTTCGGCCTTACCCTCACTGCACCAACAACCGGACAAAATGGAGACTAGCTCTATGGGCTGGGCTGAATAAGAGGTGGGAGGTGGGCACCGGGGGATTTCCCTTCTCTTTATCTCATGAATGTGTTGAAGAAGAGGAACTAGAGAGTTAGGTCATGTTCATGGTCATGGCAATTATGGTCCATGTCTTCAGCCGAATTCGTACCTGTCTGGATTAGATTTGAATTGGATACATCACCCTGCTGGCGTTGGCTGTCGACTTGTCCTGCTAGACAGCTGAATTCGTACCTGTCTGGATTAGATTTGAATTGGATACATCACCCTGCTGGCGTTGGCTGTCGACTTGTCCTCCTAGACAGATGATTGGGTATTTTAAAGTAATATGAAAGAGGGGAATTGCAGCTTCAATATCTATTTTCTTTCACCAATGTTGTTTTTCTGGTGTTCATTTGTCATTTGTGCTTTTCATTTGGCTGGGGTTAGGAGCTgcctatggtgtgtgtgtgcagcaccTAGCTTGTACAGTGATACTTCACCTTTCTCATTAGAGCCTTATGAACCCAGCCAGCGCGTCAGTCAAAGCGCTGACATCGCTCTGAGCCTGTCCGAGCTGGTGTGGCTGTCGGAATACCTGTACCCCTTTAGAAAAGTACGTCACTTCCTGGAACGCCATAGGTATTATGTATCCACTGAAGTTTGTTAGGGGTGAATACTGCCCAGAAGGAGGGATTGAACGCTGATGTGTTGGAAAGTGAGGTAGAAGTGGCCGACCTCACCGGCTACAGCACAGACACCCAACAGATCCTCCTCTGATCTGtttttgtaaaataaaataaaagttaaagGAACGTAGAAAAAAATCACAAGAAGcatttttgtataaaaaaaataaaagcacaAGGTTTTATTTCCTACAAACTCCTCCCTCCTAGATGATTTGGACCTTGTTTATTTTGGTGGCAAAGAcaggatttttttttggggggggggacatcATTCTGTACAGTTTGGGCATGATCCAGAAGTGATGTTGTGTTGGTCTGTATTGCGCTAGGCTAGTATAGGGCTCAACTAAAGTAGTACTGCTTGTGTGGCTACTGTCTGAAGTATTGAGTTGCGTTGTGTACAAGGCTTAGTGATTTACCTGGGTTACCCTTCACTCTTAGATGGGGGGAAAATGCAGGGGGGGATATCTGCAGGTCTTTTTTTGGCTAACATTGTTGAAATGACCAACTTTGCCTTTTGCTCGCGCTAAACTATGATATGTGTTTTTGACTTGATGTAGCGATAGTTAGTTTACTGGGCGGTGTCTTCAACTAAAGACATGTATGGGTCTGATAACTAAAACAACAATAGCTGATTTTAAGTTTGAAGGTAATGTCCATTGTAGGGTTTACATCAGATATAACGTGGATCTATACCTGCTGGTCCCCTTCAGAGATGTACAGATCAACGTGAGAGTGATTCCAGACAATGGCAATGAATTGACTGGTGGAGAAACTAGACTGAATGTATGATAGTCTGTGCAAAACAAAAGCATTGGGCCCGATGAAAGTATCAGACAATGTGCAGTGTGATCAAGGCCACATTGGGATAGAGCTTGGATGGGAGACCATGTTTTTCCTTGTTTTTAATTTCAGTGTTCCCTAAAAGCTTGACTGTTCAAGGCTCCTGGATAAAGATGGTCAACTATGGATTGGGTTCCAATCCATTGCCTGGTGTAAGACAGGAAAGTGGGTTTGGGGTTCCCATGTTTCCTCACAGGCCAAATGGAGCCTGCAAAAACAGAATGATGTCACAAGGATACGCAGCAGAGTACTTTGCAATTTGGCTTCTGCCGTTTCCTGAGCTGCCTATATTTATTCACTCTATATTGAAACCTTCGCTTTCCTTTCTCGTTTTTAATCTAATCATTTACAGGCACCGCTGTTAAAACAAAGGTGTATGTACTTAGGCTTCAGCCAAATTGTGTCATGCTGAAGAGAATTAGAACTTGAACTTTCTTTCTGTTTTAAGTATTCAGTTTGGATTTAATGATTCTGTTTTTTCCACATTTATGCAGTATTGTACTAAAGTGAAAAAGACAGAGAAATAAATCCCATCAGAATAAGTGGAGAAGGGCAATGGAGGCCATTTTGTGTTTGGACACTTGCATAGGGGAGAATGTGATATTTCGGTATTTTTAAAGAGTGTTGTCCTTGTTATAACTATGTTGTTTTATTTTCAAGCAGAAGTGTCAATGTTCCCACAAACAGGGTGATCCAAAGACGACATGTACTCAGCTGTGGTCTGTTGCTATGGGAAACAGTTTTGTTTTCTttcactcttttttttttattccccCCAAACTAATTCAGTGATGAGGACTATTTATAACCTTTGTTTTTCTGCTTGTTTTTAATTCCCAAGTCGAGGACTCAATGACACTTACAGTCCAAAAATCTCCAATAAACATGAGTGTGCTTCCGTTGCAACTTTGATTCAACATTATTTTTCAAAAGATTGTGAAAGTTTTACTGCTTGATTAGATTTTTAGCCCCTCGCTCTTTTAAATACATTAGACCATAGGTGTACCAATGAGATCTAATTTCCCCTGACACACTATAAACACTGACCCAATGTGAGATCTAATTTCCCCTAACACACTATCAACACTGACCCAATGTGAGATTTAATTCCCCCCCAACACACTATCAACACTGACCCAATGTGAGATCTAATTCCCCCCCAACACACTATCAACACTGACCCAATGTGAGATCTAATTCCCCCCCAACACACTATCAGCACTGACCCAATGTGAGATCTAATTCCCCCCCAACACACTATCAACACTGACCCAATGTGAGATCTAATTCCCCCCCAACACACTATCAGCACTGACCCAATGTGAGATCTAATTCCCCCCCAACACACTATCAACACTGACCCAATGTGAGATCTAATTCCCCCCAACACACTATCAGCACTGACCCAATGTGAGATCTAATTCCCCCCCAACACACTATCAGCACTGACCCAATGTGAGATCTAATTCCCCCCCAACACACTATCAACACTGACCCAATGTGAGATCTAATTTCCCCCAACACACTATCAGCACTGACCCAATGTGAGATCTAATTCCCCCCCAACACACTATCAACACTGACCCAATGTGAGATCTAATTCCCCCCAACACACTATCAACACTGTCCAAGTCAACCTGTTCCAAGTAATATCGAGGTGGGAGGGGGCCAAACCACATAGTGGTACatagccccacacacacacagccccacacacacacacacccaatctCACTTTGTGCGTAGTGAAGTCATTACTGAGGGACTCAGCTGGTGGCTTCTGTCCAGACTATTACATTAGAGGGGAAAGTAGAGGCCTGGCTTCCATCTGATCAACCATCGGCTCCCCCCCTAGTCCTGTTTCGTGGCGTCACCCCTGACCCCTGTGTTGACTGTACTGTACCTCTCCCATGCACTTGTCTTGCATGCACCTGGTGTGGAGGGGCTCGATTCATCATGTGCACCTCACGTTCTGTCTTTGTGCTTCTCCAGAGTGGAATGCACCACACCCAGACACAGTCCTATTGCTTTCACTACAGGGGACATTGGACACACGGCATGGAAAATGTcttaacaaaaaaacattgtaggAACTGTATTTGGTACCTGTCTACTACTTGAAAGTCGAgggtgttttttaattttttatctgTCCTTGGTCTTATGTGAATTtcagtcctcttcctccctccctccctcatcccctctcttctACATTTTCTCCTCTCGTTTACTCTGCATTGTGAAGTGGGCATGCTTGTCACAAGACAGACGCTCTCTGTCAGAGGAGGCTGCTGGGAGGAGCTtaaggaggatgggctcattgtaatggctggaagggaatcaatggaacggtatcaaacatatggaaaccacaacTTTGTTCCATttataccattccagccattacaatgagcccaacctcctatatctcctcccggcagcctccactgctctctATCTACAGGATTATAACCTCATAAATAGTTGTGTATAAATACTCTGTAAGTTCttttttttaataaaacattAACTGTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1958641 lncRNA upstream 26082 14572542 ~ 14573998 (+) True G1709804
TU1958643 lncRNA upstream 29005 14570446 ~ 14571075 (+) False G1709806
TU1958644 lncRNA upstream 29005 14570446 ~ 14571075 (+) True G1709806
TU1958636 lncRNA upstream 32235 14565702 ~ 14567845 (+) True G1709800
TU1958616 lncRNA upstream 66904 14532924 ~ 14533176 (+) True LOC110499790
TU1958686 lncRNA downstream 51531 14682816 ~ 14683538 (+) False G1709842
TU1958687 lncRNA downstream 51531 14682816 ~ 14683538 (+) True G1709842
TU1959041 lncRNA downstream 65043 14696328 ~ 14696991 (+) True G1710104
TU1959042 lncRNA downstream 67712 14698997 ~ 14699235 (+) True G1710105
TU1959057 lncRNA downstream 89837 14721122 ~ 14730114 (+) True G1710120
XM_036957051.1 mRNA upstream 3092 14587560 ~ 14596988 (+) False LOC110519829
XM_036957052.1 mRNA upstream 3092 14587568 ~ 14596988 (+) True LOC110519829
XM_036957046.1 mRNA upstream 34876 14549517 ~ 14565204 (+) True LOC110490791
XM_036957037.1 mRNA upstream 51225 14533785 ~ 14548855 (+) False LOC118942889
XM_021576851.2 mRNA upstream 66558 14514419 ~ 14533522 (+) False LOC110499790
XR_005038537.1 mRNA downstream 716155 15347440 ~ 15348708 (+) False LOC118942891
XM_036957071.1 mRNA downstream 831259 15462544 ~ 15700037 (+) False LOC110499821
XM_036957074.1 mRNA downstream 1069334 15700619 ~ 15737550 (+) False LOC110500994
XM_036957072.1 mRNA downstream 1069335 15700620 ~ 15737550 (+) False LOC110500994
XM_036957075.1 mRNA downstream 1069342 15700627 ~ 15737550 (+) False LOC110500994
TU1958620 other upstream 63044 14534383 ~ 14537036 (+) True LOC118942889
TU1958344 other upstream 533397 14065849 ~ 14066683 (+) True G1709592
TU1958004 other upstream 649164 13946645 ~ 13950916 (+) True LOC110499758
TU1958014 other upstream 673730 13920558 ~ 13926350 (+) False LOC110499758
TU1957974 other upstream 834624 13756186 ~ 13765456 (+) True G1709276
TU1958665 other downstream 24402 14655687 ~ 14657284 (+) True G1709824
TU1958684 other downstream 48197 14679482 ~ 14682208 (+) True G1709840
TU1959289 other downstream 501847 15133132 ~ 15133588 (+) True G1710321
TU1959855 other downstream 847863 15479148 ~ 15490871 (+) True LOC110499821
TU1959941 other downstream 1091243 15722528 ~ 15737477 (+) True LOC110500994

Expression Profile