RNA id: TU1959700


Basic Information

Item Value
RNA id TU1959700
length 1562
lncRNA type read_through
GC content 0.52
exon number 5
gene id LOC118942891
representative False

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 15347098 ~ 15356958 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATTCCAGATTCATTCTTTAATTTCCTCTGATCAGACGTgtgtcagaagtgattgtgacaCGGTTGGgatgaaaacaaaacaaatagatGCATTACTAACACACTGGAACACACGCAACGTTCAGACACAATGGTGTGTGTGCAGGACAGTgcacagggatagagggatacagagggTGAAGCCTGGTGGATAGAAGTCATGTGATCATGTAGGTTTATATAGTGGATAGAGGGATACAGCAGGGTGAAGCCTGGTGGATAGAAGTCATGTGATCATGTAGGTTTATGATAGAGGGTGTGGTGATGGGGCGGACTAGTGGCTTTGTAAGGGAGGTGAGCTGGTTGGGTGGTGATGGGGCGGACTAGTGGCTTTGTAAGGGAGGTGAGCTGGTTGGGTGGTGATGGGGCAGACTAGTGGCTTTGTAAGGGAGGTGAGCTGGTTGGGTGGTGATGGGGCGGACTAGTGGCTTTGTAAGATGGGTGAGCTGGTTGGGTGGTGATGGGGCAGACTAGTGGCTTTGTAAGAGAGGTGAGCTGGTTGGGTGGTGATGGGGCGGACTAGTGGCTTTGTAAGAGGGGTGAGCTGGTTGGGTGGTGATGGGGCGGACTAGTGGCTTTGTAAGAGGGGTGAGCTGGTTGGGTGGTGATGGGGCGGACTAGTGGCTTTGTAAGAGGGGTGAGCTGGTTGGGTAGTGATGGGGCGGACTAGTGGCTTTGTAAGGGAGGTGAGCTGGTTGGGTGGTGATGGGGCGGACTAGTGGCTTTGTAAGGGAGGTGAGCTGATTGGTTGGTGATGCGTGTTGGTAATGATAGTGGTTCAGTCCGTGAGGATATCTTCAGCTCTGGGCCTGCATTGGTTCTGGTGGACTCCGCCTAGGCTTAAACTCTCCGTCTCTGCATGTATTCATGCGTCTCCAACATGGCGGACAGTTGCACTTCTCCTACTGCTGCTGCGTGATGGAGCTGCTGCGTGATGGagctactgcactgtactctttAGGAAGTGCTACCgttgtcctcctccctcttggTAGTAGAGATAGACATGCAGTGGAGTGGGGTGGGGGAGAAGGGGTGTAGGTACTGTACGTGGGATCTTACGAAGGAGTAAAGGGTTTGGGGGTCTGTGGGAGAAGGGTGTTGGGCTAAGGGGTGTCCATCTCTCTCAGGGTTGTCTGGTTGTCTTGGGTTCCTGGTTCTGGTCAGGGTGCGGTTCTGTTTCTACCTCGAGTCGGGGTTGCGATCTCTGgtgcttcctctcctctccactcattTGCAGTCGATAAAGGGTTTATAAACCGTAATGCCACAGCACCTCACTCTTAGCCCCCAGTCCTCAACTTGTTCTGGAACAACAGGAtcaaaaaaaaagagagaatgtgagagaggggaggagggacgtagagagagggagggaaggaggggatttCATATTAGCGATAACTCTTGCCACAAATCCCCAACACATCACCCTCCCTGTCAATCCCCAACACATCACCCTCCCTGTCAATCCCCAACACATCACCCTCCCTGTCAATCCCCAACACATCACCCTCCCTGTCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1959614 lncRNA upstream 10588 15336624 ~ 15336869 (+) True G1710619
TU1959601 lncRNA upstream 33223 15313831 ~ 15314234 (+) True G1710606
TU1959598 lncRNA upstream 35163 15312084 ~ 15312294 (+) True G1710603
TU1959340 lncRNA upstream 46043 15301131 ~ 15301414 (+) True G1710367
TU1959316 lncRNA upstream 64217 15279947 ~ 15283240 (+) True G1710344
TU1959853 lncRNA downstream 111582 15461883 ~ 15462130 (+) True G1710732
TU1959856 lncRNA downstream 113648 15463949 ~ 15464148 (+) True G1710735
TU1959857 lncRNA downstream 114922 15465223 ~ 15465758 (+) True G1710736
TU1959911 lncRNA downstream 265319 15615620 ~ 15617131 (+) True G1710784
TU1959919 lncRNA downstream 300054 15650355 ~ 15651386 (+) True G1710792
XM_036957053.1 mRNA upstream 716172 14600080 ~ 14631285 (+) False LOC110490612
XM_036957054.1 mRNA upstream 716172 14600080 ~ 14631285 (+) False LOC110490612
XM_036957051.1 mRNA upstream 750469 14587560 ~ 14596988 (+) False LOC110519829
XM_036957052.1 mRNA upstream 750469 14587568 ~ 14596988 (+) True LOC110519829
XM_036957046.1 mRNA upstream 782253 14549517 ~ 14565204 (+) True LOC110490791
XM_036957071.1 mRNA downstream 112243 15462544 ~ 15700037 (+) False LOC110499821
XM_036957074.1 mRNA downstream 350318 15700619 ~ 15737550 (+) False LOC110500994
XM_036957072.1 mRNA downstream 350319 15700620 ~ 15737550 (+) False LOC110500994
XM_036957075.1 mRNA downstream 350326 15700627 ~ 15737550 (+) False LOC110500994
XM_036957073.1 mRNA downstream 350337 15700638 ~ 15737550 (+) False LOC110500994
TU1959289 other upstream 213869 15133132 ~ 15133588 (+) True G1710321
TU1958684 other upstream 665249 14679482 ~ 14682208 (+) True G1709840
TU1958665 other upstream 690173 14655687 ~ 14657284 (+) True G1709824
TU1958620 other upstream 810421 14534383 ~ 14537036 (+) True LOC118942889
TU1958344 other upstream 1280774 14065849 ~ 14066683 (+) True G1709592
TU1959855 other downstream 128847 15479148 ~ 15490871 (+) True LOC110499821
TU1959941 other downstream 372227 15722528 ~ 15737477 (+) True LOC110500994
TU1960069 other downstream 580797 15931098 ~ 15936421 (+) True G1710901
TU1960217 other downstream 1175276 16525577 ~ 16528816 (+) False LOC110499847
TU1961165 other downstream 1369619 16719920 ~ 16720470 (+) False G1711795

Expression Profile