RNA id: XM_036957078.1


Basic Information

Item Value
RNA id XM_036957078.1
length 7442
RNA type mRNA
GC content 0.53
exon number 78
gene id col7a1l
representative True

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 15779575 ~ 15866718 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

aatacaatctcGGATTCTTACTTCTCCCGTGTGGGCACTTCTAAACTTTTTCTcagggatttttttctctcacaacCTGGCAACCCGTAGAGAGCAGCAAGCAGCAGTTGCCAGAACAAGTTGCCAGAACAAGAGGATGTGTCCTATCCCTGGAGAGAAAAGATAGAAGAGTCTGAGCTGAATCTTAACGAGGACGTGGATCTGTCGGAGGAGATCTGAGGAGACGACCAggaacaggagagaagaggaggagaaggagggataaaagaggaggaggagaacagagcatGGGCCATTCCTGCTTGTGGATTTTTctgctgtccctgtctctctcccaccagGCAGTCACTGAACAGGCAGAAGCATGTCGGACGGCGGAGCCTGCAGACCTAGTGTTCTTGGTGGATGAGTCGTGGGGCGTGGGCCAGACCAGCTTCTCCAGGGTTAAAGACTTCATCTCGGCCATCATCAATTCCTTTCAGGACAGCGTGGTGGGGTCCGAGGGCATCCGCTTTGGCGTCACCGTCTACGGAGATATACCCAGgaTGCGTATCGCCCTGACAGACTACAGTAGTCTCGAGGAGGTCCTGAGGGCAGTAAAGGACCTCCCCTTTGAAGGCGGGGCCAGTCGAACGGGCGACGCCCTCCAGTTCCTGGTGGATTATGTCTTCAGTGCGGCTATCACCAGGGACAATACCCCCAAGATTGCTGTCCTGATCACAAACGGCCGTTCGGATGACCAGGTGGATGGGCCGGCCAAGGCTGTCACAGACAATGGAATCTCTATCTATGCAGTGGGGGTGAGAGGAGCCGACGAATCAGAGCTGCGCAGGATTGTGACTGAGCCCCACGAGGAACACCTGTTGTTAGCCGCTGACTTCTCTCTCTTGGATGCTCTCCTGCCCAAACTGTCCCGAAGAATCTGTTTCACCGCCTCTGAACCCCCACGCCCCGTCAAACACACCCCGGCTGtGGAGGAGCGTGTGGTGGGTCCCCGGGACCTTCAGGTGAGTGAGCTAGCCTACAGTAGTCTGAGGCTGACCTGGAGCCAGGCCACAGGGGACGTCACCGGCTACCGCCTCCTGGTCACCCCCCTCAGTCCCAAGGGACAGCTGCTGCCCAGCCTGCAGACAcagACTGATCTGAAAGGTGATGAGAGGACATCTCTAGTGACAGAGCTGACTCCTAAGACAGAGTACTCTCTGACTGTCTACGCCATCTACCCTGGCCTCATTGGAGActctgccaccatcattacacagACACCCCCTGTGCCTCCTGTCTCAAACTTCCGTGTGATGGAGGAGGGCCTCTTCTCTCTGAGGTTGGCATGGACACCACCTCTAGGGAAGCTCGAGGGATACAAGATATTCATCCCCAGATCCGACCGGCCAGGACTGACCTATGAGCAGGTGCTGCGCGGCGACACCTCCTCCCATGTGATTGACAGCTTGGAGGAGGATAAGAAGTACACCGTCAGTATCTTTGCTATTTACCCCCAGGGCCCCAGCCAACCTGTCTCGATCGTCGGCAAAACACTGAAACTGGTTCCAGTGCAGCAGCTCCTGGTCCAAAACGCCACCACAGACACCGTCCAGGCCCGCTGGGGCTCAGTGAAGGGGGCCACGGGGTATCGCATCACCTGGTCCTCCTCAGAGGGCCATAGAGAGAACGTGAACCTGGGGGAGACCTTTAACTTCTACATGATCCAGGGCCTCCACCCAGGCACTGAGTACGCCATCACCATCAACCCCATCTTTGTGGACATCGAGGGCCCTGTCATCTCTATCCCAGCCAAGACACTGGAGAGCAGTGCAGTCCAGACTCTGAAGGCATCGGCAGTGAGCACCAACAGTGCCATGGTCTCCTGGAACTCTGTCCCTGGGGCCACCGGCTACAGACTAGCCTGGGGGCCCACTCCAGAGTTTGTGGGTCGGGACCGTCCTAGGCAGCTGGCTCTGAACGGCTCCACCACAGAGCACCTTCTGAAGAACGTGGTCCATGACACAGAGTATGTCCTGTCTCTTTACGTCCTGTTTGGATCACTGGTGGGTCCCGGCGTCTCAGCTACCTTCCGCACCTCCCCTTTGGGATATGTGTCTAACTTCCACGTGACTTCCTACACCAGTTCCTCCATCGACGTGGAGTGGAGTCCCGTCGTGGGGTCCACCGAGTACAAACTCACCTGGAACATCGATGGCAACACTCCCCAGTCCCAGTATTTGGACCGCAGCGTTCTGTTCCACCGCATTGAGGGCCTCAACCCAGAGACAGTCTACATAGTTAGCATCCACGCTGTCTACGGCAACACAGAGGGGCCAGAAATCTCCCTCTCACAGCTCACAGCGTCGGTGACAGAGTCAGAGCTGATCCAGGCGGTCAAGGAGGTGAAGGTGGTGGATGTCGGAATCAACTCCTTCATACTGACCTGGAAGAGAACACCTGGGGTCACTGGCTACAAGATCTCCTGGAGCCCCTTCCatgGTGGCGATGAGAAGTCCCAGCTAGTCTCTTCCTCCACGACCTCCTTCACGATCCCTAAGTTACAGGAGAGCTCGGCCTATAAGATCCAGGTGGCATCTATGGTGGGGGGCCGAGAAGGGAGCCCGTTCCTGGTCACTGCACGCACCTTGGACCTGCCTAAAGTGAACGGCTTTGCAGCGCTGAACACCACAGACAGCAGTACTTCCCTCAACTGGATCAGAGTTGCCGAGGCTTCTGGGTACCTGCTCTCCTGGAGGCACAtctcagAGTTGGACACCAAAAAGGAGAAGCTTGGCCCTTCTGCCACCATGTTTAAGCTGAGTGATCTGCTGTATGGCAGGACCTACATCTTCACCATCAGACCTCTgtatggagaggtggagggacccATCACCTCTATCAACCACAGGATAGTGGCCAAGGACCGTCCTCTGGTGCCTGTCCAGTCTTCACCTGTCAcgccttcccctctcctccctcacaccCTCACCGCCTCCCACCCCAACGCAGCCAAAACCACCAAAGCCCACACCCGCTCCACTGTCACCAAAGCCCCCTCCAAAACCACCTCCGGCACCGCCAAGAAACCCCCAAGCACCACCGTTGTCAAAACAGCTGCAGCCACCACCAGCGTCGGCCATCTTACCACCAATACCAGAAACGTATTGGTTTTGAATACAGAGACAACTGTTGGACCAGGGCCAGtgtgtggcAGGGTGAAGGCAGACATAGTGTTCCTGGTGGATGAGTCATGGAGCATCGGATCCAATAACTTTGCCAAGCTCAAGGACTTCCTGTTCCGGGTTGTCACCTATTTCCCTGTGATTGGTCCTCAGGGCacacagATAGCAGTTGTGCACTACAGTGATGAACCAAGGATAGAGTTCAAACTGAATGATTACAAGAACAGGAACTCTGTTCTAAAGGCTCTGAGAGGAGTACACTATGGAGGAGGCAACACCAAAAcagGGAAGGGGATGAGCTACGTTCTGAAGGAGCTGTTCCAGGAGTCTCTGGGGATGAGGCAGGAGGTGCCTCATGTCTTGGTGTTGCTGACAGATGGCCGGGCCGTGGACGATGTGGAGCAACCCTCCAGGATCGCACAGGCTTATGGTGTGAGTGTGCTGGCCATCGGGGTGGCCAATGCAGACATGGACGAGCTGAAGAAGATAGCATATCCAGCCAGCTACCAGAACATCTTCTACGCCAGGGACTTTGATGACTTCTCTTCCATAGAGAGAGAGTTCATCAGCAACATCTGCAGCGAGGCGCTGCTCTCTGAGTTCAGACAACACGACGAGTCTGCCCAGCTGGACACTCCAACTGATGACCCTGATGAGCTGACCAAACCCCAGGGCCCCTGCTCCTTACAGTGCAAGGGGCAGAAAGGTGAAAAGGGAGATGGCTCTGGTAATGGTGGACTGAGACTCCAGCAAAACACTGCAATGTTTGAGTCAATTGGCCTCAAGTccaaaggagagaaaggagagagaGGACTTCCTGGAACAGATGGTGTCCCCGGGTTGCCAGGACGACCAGGACGAACCGGACCCCCAGGTTCAGCCGGACAACGGGGTTTAGAAGGTGTTCCAGGTGATCTGGGTCCTCCTGGTATCACTGGTCCAAaaggccagagaggagagaggGGGGAGCCTGGGTATGTTATAGGGGGCATAGGAGACGGCCATTATGCTCCTGGACGAAAGGGAGAGCCTGGATCATCAGGACCCCAAGGGGCTCCGGGTGTACCAGGGGTCTCTGGACCCTCAGGCCTGCCTGGACAGTCAGGTTCACCTGGGTCCTCAGGGATATCTGTTAAGGGGGAACATGGGGAGGCAGGTGCTAAAGGTTTGCGTGGGAAAGCAGGGGCCAAAGGAGACAAAGGAGATCATGGTAAAGATGGCCAAGCAGGGTTACCTGGTCCCATTGGAATTGATGGTGTTCCAGGCTTCCCAGGTCAAAAGGGATATAAGggagaggaggggatcgGGGTTCCCGGTGTCCAGGGGCCTCGTGGAGAGCCAGGGGAGAAGGGAAATATAGGCCTATCAGGACCTGAGGGACTAAAGGGAGAGGCTGGTGTTCAAGGGATACAAGGGATTGTCGGACCACGGGGGAAGAAGGGAGTGAAAGGCATCCAAGGGGATAAGGGCGATCGAGGAGAGGTGGGGCCTATGGGAACACAGGGAGTGACAGGGTTTGCGGGGGCTCTTGGCCAGAAGGGTGACGAGggacagagaggagttCCTGGTGACCCAGCCAAAGGGATCCTTGGTCCCACAGGAAAGAAGGGTACCAGGGGTGACATTGGTCCCATCGGTCCGACTGGACCCCAGGGAGTAAAAGGGGTCCAAGGAGTCAAAGGAGAGAAGGGTAGTCCTGGGTTCGGCATTCCTGGACAGCAGGGACCAAAGGGAGAAAACGGTGAAAGGGGAAATGTTGGCTTGTCTGGGAAACCTGGACCCAAGGGGCACGATGGCTCTAAAGGGGCAGGGGGAACTGTTGGGGTCCCCGGGAATCCTGGAGCACCAGGACTAAGAGGTAAAGATGGTGTGCCTGGAATCAAAGGAGAATCAGGACTACGGGGAGAGCAGGGACCAGCGGGTGAGCCTGGTGAGAGAGGAACAAGGGGCCCACTGGGGTTACCGGGACGACCAGGGGACCCAGCAGAGAAAGGAGATACCGGGAACATTGGTTTGCCTGGAACGGAGGGAAAGAAAGGAGAGCCTGGAAaaccaggacctccgggaggcGCGCAATTCAGTTCAGACAACAATATCCTGACTAGGGTGATCAAGGGTGAACCAGGACATCCCGGAGAGCCCGGTCTCAGAGGGGAGACAGGTCTGCCTGGACAAAGGGGTCCTGATGGAAAACCAGGATCTCCAGGAACGGGAGGGTCTGGGTCAGGGAGAGATGGTCTGGATGGGTTACCAGGAAAACCTGGATCCAAGGGTGACCCAGGAAAGACAGGCGAGCCAGGAACGaggggagagaaaggagaccAAGGCAGGGTGGGGATTGCTGGAATGCCTGGATTACCTGGGACCCCAGGTAGACCTGGCATTGATGGAAAGAGAGGTCTGGCTGGAAAAGATGGAGAGCAAGGACAAAGAGGAGATGATGGCAAAAAGGGTGATACAGGTGAATCGGGAGCTGAGGGTAAAAAAGGGGAATTGGGTGCTCCGGGCCCACCTGGTACCCATGTTCTGGTCACTCAACAAGAGGGTGCCACCCTTGAAGAGATGAGACAGGCATTCCCTTTGCCAATGGGACCTCCTGGGGCTAAAgGTCCACCAGGGATGAAGGGTGACGCTGGTCTTCCAGGGAAAGCAGCTGACATGAAGAACATTGAAGTAATGTTTGAAGACTATGGCATAAGGCTGCCCTTGCTGAAGGCACTGATTGACAGGCTGCTGCAGGACGGCATGGAGGAGCTTCTGCAGGAGCTAACCACCTCTAGAAGAGTCAATGAGAAGGAGAAACACGGCTCCAACATTATCACTGACTACACAAGAACTGTAAAGTATGAGATCTCCAAGGAGCCTCTGACAGAGATGGACACCATAGAGGAGGCAGTTGACTCTGACCTAGACAGACAGCTACCAGAACCTAACTCTGATGCTTTGAATGAAACGGCGGAGGGCCCCACATTCTGGAGCCTCACCCCTCTTAATGGTCTTAATGGGGTCCAAGACGTGGGGAGGATAGAGAGCACCTCTAAGGGGATAGAGGGGACACTGACAGTAGACGAGGACTTCAGTGAAGCTCCCTCCCCCAAGTTGGCTTTATCAAACTCAACATTTAACAAGACAACGTCTGAAGAGagggTCTCTGAGGTACCAGGGACAATAGTAGAAACTGTTCTCCTCAGTGGGGAAGACTCCTTGAAGAAAAAGAAGAGTCGGGAACGGAAGGGCAAGGGACAGAAAGGACGACATAAGAGGCAAAGACAACGCCTGaCGAgtacagaggaggaagaggaagcggAGGAGGAGGAATTATACGATGGGGATGAGTACAGTTATGAATATGAGGATTCCACAGATGATCCCTCACTGTCAATTGAAAAGCAAGGGGAGTTTGAAATCACAACAGAAAGCACACTACATGGAATGAGCAAAGAGAGTGGCCTGACAACTTTAGGTCCATATCCATCCCAGTCACCGGGAGACAGTGAAAAGCAGGGGGAATTCATCACACCTGTCCTTCCTAGCACAACGGAAGAAACAGAGAAGGACCTTTCCTCAATCCAGAAAGATTGAGACTGTAGATTAGTAAACACGGAGTGTTGGTATAAACTGTGAAGTGAAGTGTATCGCTGGTGAGGAGCAGTCTACCCTTAACCTGACCAGCATAACATGAGGAGGGACTTCGCTTCGTCGCGCAATGATGATGTAATTTGTCCAATGTCACTCGTCCAATGCCACTTCTATGACCAGAATCGTGTGTTATACTTAATTCAAATACCTAAAAGATGAACAATACATAGGTAAAGCTAAGTTAAATCAAGACAGTGTATTATATAAGGATTATTGGACTAATAAATCCTTCCATCAGATGTCAGTGTTATTTTAGCATCGACTTTGCATAaactcatttatttattaaagaaGTTGAAACCGTTACATTGGACCTAAGCTGTAGTATCTCTCTGTCGCTTCAGTATTACAACAGTTTTAACCTCCTCGTAATTTGTTCAACCGTATTCTAATGTTTTCAGTGTATCGCTGCTTATCAATTCCTCAACCAAATGTTATTTATTGAAAACATGGAAATAGATTGTATTTTGTTCCTTTTCTGTATTACTTACTACTTTTTcaatgaaatgtgtttccatcatATTCTTCAGAATATACAGTATTCAAACCTGTTTACACTGGTGAAATGTTGGCAGTCTAAAGTTTTCTCTTTGTATTTAACCTCTCTGTGTGCATGTAAGTAAATGTTCAAATGAT

Function

GO: NA

KEGG:

id description
K16628 COL7A; collagen type VII alpha

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1959944 lncRNA upstream 41094 15683735 ~ 15738481 (+) True G1710809
TU1959949 lncRNA upstream 84840 15692882 ~ 15694735 (+) True G1710813
TU1959946 lncRNA upstream 94621 15684373 ~ 15684954 (+) True G1710810
TU1959919 lncRNA upstream 128189 15650355 ~ 15651386 (+) True G1710792
TU1959911 lncRNA upstream 162444 15615620 ~ 15617131 (+) True G1710784
TU1960044 lncRNA downstream 928 15867646 ~ 15869320 (+) True G1710880
TU1960055 lncRNA downstream 23111 15889829 ~ 15890156 (+) True G1710890
TU1960061 lncRNA downstream 46189 15912907 ~ 15913707 (+) True G1710896
TU1960067 lncRNA downstream 64380 15931098 ~ 15932717 (+) False G1710901
TU1960075 lncRNA downstream 79639 15946357 ~ 15946644 (+) True G1710907
XM_036957074.1 mRNA upstream 42025 15700619 ~ 15737550 (+) False LOC110500994
XM_036957072.1 mRNA upstream 42025 15700620 ~ 15737550 (+) False LOC110500994
XM_036957075.1 mRNA upstream 42025 15700627 ~ 15737550 (+) False LOC110500994
XM_036957073.1 mRNA upstream 42025 15700638 ~ 15737550 (+) False LOC110500994
XM_036957071.1 mRNA upstream 79538 15462544 ~ 15700037 (+) False LOC110499821
XM_036957079.1 mRNA downstream 3472 15870190 ~ 15889111 (+) True LOC110490786
XM_021596023.2 mRNA downstream 36213 15902931 ~ 15905674 (+) True LOC110518420
XM_036957080.1 mRNA downstream 41726 15908444 ~ 15923791 (+) True copg2
XM_036957098.1 mRNA downstream 424755 16291473 ~ 16298592 (+) False LOC110499838
XM_036957097.1 mRNA downstream 424871 16291589 ~ 16298592 (+) False LOC110499838
TU1959941 other upstream 42098 15722528 ~ 15737477 (+) True LOC110500994
TU1959855 other upstream 288704 15479148 ~ 15490871 (+) True LOC110499821
TU1959289 other upstream 645987 15133132 ~ 15133588 (+) True G1710321
TU1958684 other upstream 1097367 14679482 ~ 14682208 (+) True G1709840
TU1958665 other upstream 1122291 14655687 ~ 14657284 (+) True G1709824
TU1960069 other downstream 64380 15931098 ~ 15936421 (+) True G1710901
TU1960217 other downstream 658859 16525577 ~ 16528816 (+) False LOC110499847
TU1961165 other downstream 853202 16719920 ~ 16720470 (+) False G1711795
TU1961166 other downstream 853202 16719920 ~ 16720552 (+) False G1711795
TU1961163 other downstream 853237 16719955 ~ 16720470 (+) False G1711795

Expression Profile