RNA id: XM_036957100.1


Basic Information

Item Value
RNA id XM_036957100.1
length 3856
RNA type mRNA
GC content 0.60
exon number 14
gene id LOC110499847
representative False

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 16318043 ~ 16528816 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

acagagagagagagagagagaagtgagagagaaagagaagccaTTACGGAGATTCCACACAGAGAATCGTCAGACGGCAGAGAAAGCATCCAAGCTTTGCATGTAGGTCGACCGAACGCCTCGCCAAAACCACTCGAGGAGAGAATCTGAGCAGGAAAGGCTGATCACGAAAATCCAAACGTGATAGATATTAAACCAGGTATGGAGAGCCTGCTAGATAACCCAATGAAAGCCGTGCTGTATCTGAAGGAACTCACCACCATCGTGCAGAATCAGCAGAGCCTGATCCAGACGCAGCGCCAGCGTATCGACGAGCTCGAGCGGAAGGTGGAGGACCTCATTGGGGAAAACCGCCATCTGCGGGACCCCCATCAGtcctatcaccaccaccaccacccgtCTCCCCGCAGTACAAGCCCTCAGCCACCCGTCCACCTGCACCAGCATCCAGGGGGCAACAAAGCCGGGGTTCATCCTAGCCAGCAACCGCAGCAGGTCGCTTCTTTAACGGCACAGCCTCCGCAGCATCCTCCCCCTCCGACGCCTCCAGTTCACCATCCGCAGCAACTGCAGCTGGTGCCCACCTCCCCGCCGTCTCCAAAAGCGGGCCAGAGCAGCCCCGACTCAGCGGAAGAGGACAAGAAAAGCCCGGCATGCTGCAAGTCCCTGGTCCCGCAAACACCTACGACTCTGTGCCGCTCCGTTGGACTTGCCAGGAAAGCAGAGAACCAGACTGTGCTGCACCAGTTCTGCTGCCCGGCCCCAGAGGCCCCCGAGGGGGAGTCCTCGGCCTGTGTCCCCAGCGACGACCTTCCTCCAGACTCACCCTCAggtgaggagggaaagagagagggagaaggggagctCCAGCCCCAGGTCCAACCCCAGCAGCCTGAGCTCCAAGCCCAGCCCCAACCTGAACCCCAGCCTCAGCCTAAACCCGAGGGCACGAGCGTGGGCGAAACACAGCAGGAGGTCACCCCCGCGGCCTCCCGCTCACCAAGCGGAGGGGAACTcgagcaggaggagggagagcgaggagataaggaggaggaggagataaagCAGAAAGAGGTGGTGGATtcgcagcaggagcagcagcatgagGGGGAGGCAGCAGTAGAGgctgaggtggaggaggaggaggatggagcagAGGCCCGGGGGGGAGCGGCGGGGAGGAGGGCCAGCCTGCACCACACAGCTTCCCCCATGAGGGTGCAGCGCAACGGGGCCTGCTCGCACTCCACCACCTCCGACTACGAGCTCTCGCTCGACCTCAAAAACAAGCAGATCGAAATGTTAGAGCACAAATACGGCGGCCACCTCATCTCCCGCCGCGCTGCCACCAAGATCCAGACCGCCTTCCGCCAGTACCAGCTCAGCAAGAACTTCGAGAAGATCCGCAACTCCCTGCTGGAGAGTCGCCTGCCGCGGCGCATCTCCATGCGCAAGGTGCGCGTGCAGAACGCTGAGGGCTTCTCCGCCGAGCGGGCGCTGGCCGAAGGCTGCAGCCTGGCGGGTATCCCCCTAGTGCGCTCGCCATCACTGCCCGCCACAGTGGGCGGCACCCTGACCGACCTGGAGGACTCATTCACAGAGCAGGTGCAGTCGTTGGCAAAGTCCATCGACGACGCACTCAGCAACTGGAGCCTGAAGACCATGTGCTCCCTCCAGGAAGGAGGGGCCTACCAGTTCAGTGCAGAGTCCTTCAGTGCGGCCGGAGGGGaagtgggaggaggagggttggaccAGGCTTTTCTCCAGAGCATGTCAGGTGGGGAGAATACAGGCGACCTGCCCCGCAGCGCCAGCAAGCTGCTGATGGCCTTCCGCGACGTGACCGTTCAGATTGACAATCAGAACTTCCGCATGTCCTCCTCCGTCATGGAGTCATCAGCCTCTGTCTCCATGGGCAACTGCGTCCAGCAGCAGCAGGGGGGTGCAGCCACCACCCCCACCATGCCCACCGCTCCCCCGCCCTCACCCCCTAAAaaacactcccctcctccccctgaaGAGGTCCCCACCGAACCCACAGACCCTCCTGTCCCTCCCCACGAGCCCCCTCCGCCCCCGGAACCAGTGGTAGAAGGAGAGGGGCAGGACGCCGACTTCCCTGCGCCCCCGCCCAGTGAAGAGgagctagaggaggaggaggagggccagcAACCCCCCTTGACCCCCCTGGACAAACTAGCCAACCCACAGACCCCGGAGGTGGTCGTCCAGCCCTTCCAGCCACCTCAACCCCAGGATGGTGCACCCTCAGTGGCAACCCCATCCACCGAGGCCCTGGAGGCCAAGCGGAGCGGCTCGGAAACGGCTGAAACCAGTTCCGAGCAGATAAGCTGCAGCAACAGCACTTCCACGGAGGCACGCTCGGCATCGGAGGCCTCATCCAAGGAGGCCCTGCAGGCCATGATCCTCAGCCTGCCGCGCTACCACTGCGAGAACCCGGCCAGCTGCAAGTCGCCCACACTCTCCACCGACGTCATGCGCAAGCGCCTCTACCGCATCGGCCTCAACCTTTTCAATGTTAACCCTGATAAGGGTCTCCAGTTCCTGATCTCACGAGGTTTCATCCCGGACACGCCCATAGGTGTGGCTCACTTCCTGCTTCAGAGGAAGGGCCTGAGCAGGCAGATGATTGGAGAGTTCCTGGGAAACAGCAAGAAGCCCTTCAACAGAGACGTCCTAGATTGTGTGGTGGATGAGATGGATTTCTCAGGGATGGAGCTGGACGAGGCTCTGAGGAAGTTCCAGGCTCACATCAGAGTCCAGGGAGAGGCCCAGAAGGTGGAGAGACTGATCGAGGCCTTCAGTCAGCGGTACTGCATGTGTAACCCGGACGTGGTGCAGCAGTTCCACAACCCCGACACCATCTTCATCCTGGCCTTCGCTATCATCCTCCTCAACACAGACATGTACTCACCCAACATCAAGCCTGACCGCAAGATGATGCTGGAGGACTTCATACGCAACCTCCGAGgtgtggATGACGGAGCTGACATCCCCAGAGACATGGTGGTGGGCATCTATGAGAGGATCCAACAGAGAGAGCTGCGCTCCAATGAAGACCACGTCACCTACGTCACCAAGGTGGAGCAGTCCATTGTGGGCATGAAGACAGTTCTGTCTGTTCCCCACAGAAGATTGGTGTGCTGTAGCCGTCTGTTTGAGGTGACGGACGTCAACAAGGCCCAGAAACAGGCAGCCCACCAGAGAGAAGTCTTCCTCTTCAATGACCTTATCGTGATCCTGAAGCTGTGTCCGAAGAAGAAGAGTTCAGCAGCCTACACCTTCTGTAAAGCCCTGGGCCTCCTGGGCATGCACTTCACACTGTTTGAGAACGAGTactaCCCCCATGGCATCACCATCATCTCACCCTTCGGCTCAGACAAGAAGCAGGTGCTCAACTTCTGTGCTCAGAGCGCCGAGGAGCTGCTCAAGTTTCTAGAAGATCTGAAGGAGTCCATTGCTGAGGTGTCAGAGATGGAACAGATACGCATTGAATGGGAGTTGGAGAAACAACAGGGCTCGAAGGGAGTGTCAGCTAAGAACAATGGCACTCTGGAGCTACGCAGCAAACAGGGCTCCCcgtcagGCAAGCAGGACCTGGATGAGAACAGTGGACACAATGCAGTGGAGGCTTCATACGTACCAGCTCAGCAGCAGCGGGAGCTTGCCCAGGAGCCCCGAGAGTGTTGGAGCCCTTCTTAACCACCGGGGGGAGCTCTTGCAGCAGCCGCAGCTTCAGTCAGCCGCTGGCACCCCCCTCCACCACCTGCAACAGCTCCAGCCAATCAGCATGGGCGACCTTCGGCCCGACACGCTCATCCAGTGCCAGCAGATT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1960268 lncRNA upstream 4860 16312924 ~ 16313184 (+) True G1711055
TU1960265 lncRNA upstream 9937 16307786 ~ 16308107 (+) True G1711052
TU1960264 lncRNA upstream 10385 16307423 ~ 16307659 (+) True G1711051
TU1960259 lncRNA upstream 18159 16299141 ~ 16299885 (+) True G1711046
TU1960208 lncRNA upstream 98734 16217996 ~ 16219310 (+) True G1711008
TU1960218 lncRNA downstream 1381 16526575 ~ 16528816 (+) True LOC110499847
TU1960398 lncRNA downstream 53471 16578665 ~ 16578963 (+) True G1711174
TU1960363 lncRNA downstream 75356 16600550 ~ 16601602 (+) True G1711141
TU1960364 lncRNA downstream 76538 16601732 ~ 16602382 (+) True G1711142
TU1960416 lncRNA downstream 96267 16621461 ~ 16621761 (+) True G1711191
XM_036957098.1 mRNA upstream 19452 16291473 ~ 16298592 (+) False LOC110499838
XM_036957097.1 mRNA upstream 19452 16291589 ~ 16298592 (+) False LOC110499838
XM_036957096.1 mRNA upstream 19452 16291597 ~ 16298592 (+) True LOC110499838
XM_036957080.1 mRNA upstream 394253 15908444 ~ 15923791 (+) True copg2
XM_021596023.2 mRNA upstream 412370 15902931 ~ 15905674 (+) True LOC110518420
XM_036957109.1 mRNA downstream 69233 16594427 ~ 16600458 (+) False LOC110499856
XM_036957110.1 mRNA downstream 69386 16594580 ~ 16600458 (+) True LOC110499856
XM_036957108.1 mRNA downstream 79065 16604259 ~ 16608641 (+) True LOC110499844
XM_021576924.2 mRNA downstream 215175 16740369 ~ 16742399 (+) False LOC110499863
XM_036957113.1 mRNA downstream 217601 16742795 ~ 16758777 (+) False LOC110499861
TU1960069 other upstream 381623 15931098 ~ 15936421 (+) True G1710901
TU1959941 other upstream 580567 15722528 ~ 15737477 (+) True LOC110500994
TU1959855 other upstream 827173 15479148 ~ 15490871 (+) True LOC110499821
TU1959289 other upstream 1184456 15133132 ~ 15133588 (+) True G1710321
TU1958684 other upstream 1635836 14679482 ~ 14682208 (+) True G1709840
TU1960217 other downstream 383 16525577 ~ 16528816 (+) False LOC110499847
TU1961165 other downstream 194726 16719920 ~ 16720470 (+) False G1711795
TU1961166 other downstream 194726 16719920 ~ 16720552 (+) False G1711795
TU1961163 other downstream 194761 16719955 ~ 16720470 (+) False G1711795
TU1961164 other downstream 194761 16719955 ~ 16720470 (+) True G1711795

Expression Profile