RNA id: TU1960218


Basic Information

Item Value
RNA id TU1960218
length 2170
lncRNA type inter_gene
GC content 0.42
exon number 2
gene id LOC110499847
representative True

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 16318043 ~ 16528816 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gtctctctcttgtctctctgtgtctctctctctctgtgatctgAGGAGGTGTGTTATTTGTTACTCTCTGTGGtgttgtttttctttattttctattaTCAGGAAACACACTTCCACTGTCATCCTCCACAGATCCCCCGTCCAGTTACTGTAGCTAAGGATGATGGCATATGAAGGCAAGGCAACCAATCAGAAGGCTTACTGCCAAACCAAAAGCCAATAACAGCCCAGGAAATAAGCTCTTTATTTGCTGTCGTCATTGTTATATTCAGCTCAGGAATTCTTGACGTAAATGTTCTGGAATGTTCTGGAATGGTTTAGATTGCACATTTATTGTGTGCATGTGCTGTTATGCTGAGAGCATAACTAGGACCAGGAATAACTCCAGGCCCTAATCACAGCCAATAAGACTGGCAATTCCCACGATTCGCCCTTTGCCAGTCTGTAGATCTGTCTGCCAATACAATCCAACCAAAATGATTTCCCAGTGTATTTTGGAGTGCAACACACTCATTATGTTAAACATATGCACTGGACAAACATGACACTTGTAATTTCTCAATGCTGCTTCTTCTGTGTATCAAGATAGCCTTTTTATTTGACTTTTTTAAAAGCTTAGTACTCCAATATTCACATCATTCATAACAGCACTCAAATGTTTTGTCTGTTATTTGCTCATCTGTATTGAATGGGACAAGAATAATCTTAATCTCTCACTTTTCGTTCAGCTTAGTTTGTTAAATATCAAATTGGGTTGTCGGAGAGGACAACCGAGTTATCTCCATCCATGTAAATGCTAAGGTCAACAAAATGTAATTTATCTGAAATAGTTCATCGACTGCTCTGGTCTGAATGTGCCCATGTTTAAAACATGAGCTACATCAGGTGGTTTGGAATATATATTCGGCTGGCCCTCCTGGCCTCCTCTCATTCAGCCCTGCCGCTAGTTCAGATAATTACCAACCTGCTGTGTGGAGGTCTCCAACTCATCTCCAATCTCAGTCTACTTTATCTGTGAGGAGCGAGCCTCTGGAAAAACAATCTATTGCACCACGCTGCTGTGGGGGCTGagaggttttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgatatgtatcccatatctcctgtgtgtgtgtgtgtgtgtattgTCCCTTGCCCTCCGCAGCATCGTGACTCCCGCTCACCAAGAGGAGATCTCACACGAATCTCTTCAGCGGAGATCCTTCCCCTTTTTAATGTGTCAGTTTCAATAGACACAAGGCTCTGTTATATTAACTGCTGAAGGGTGTTTAAAACAGGGTTACATATTTCAAATACTTCACTGTGTCAGTGTCCCAAATAGGGCactgttccctacatagtcccCTACTTTTgacctataggccctggtcaaaattagtgcactggaaagggaatagggtgccatttgggacgctcaGTGTCTCTTTAGGGTTTAACAGCCTATGGCAAACCAGAGAGCTGTGTCTGTATCCATTTCACACTCTAAGAACAAGTTAATCTGTTTTCTGTTCCTTTCGTCGTTGTCAATTCAACATGTGGAGTGAATGTGATTCTTCAACCCGGCATGACATTGGTTTTGTATGTATAGGAGGCCTATTGATACTGTGATACATGCTTTCCCTTCAAAGTCAACTTTGTTGTGCATGACTGAATTTGACAGAGTGCAGCACAGGGGATAAATATGTCATTATTCTGTCCGTTCACCCACAATGCATCAGAATGTGAAAAGCCTATCATTGTCTTTGTGGGCAAAAATGTGACTGTCTCCCATGAATGGAGTCTCAAGCAGCAAAAAGGAGGTTTAGTGGAATTGATTGAATGCTACTGTAAATTCGTTCAAATGACTAACCTTTTTCTTTGGATATAGACGAAAGGGCTCTGTGATGCTTAAAATGCACTGCTGTCGTTTCAGGTGACGCGTGGAACTCTTCCCTTCTGGGGGTTTTCTGTCACCTATGTTGTTCTATTGTCGCACAATGAGGAAGGGGGCCTTTTAGGAGGACAGGCTTGTTGAATTTGGGCATAGGTTTTAACCATCGCCTCCCTCGGTTGGCTTTGAATCCCTCTTTACCTGTCTTCTGTTCTGCAGTATATCAACATGCTATTAAAGATGGTTTCAGTCTATTCACCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1960376 lncRNA upstream 2041 16523620 ~ 16524534 (+) True G1711152
TU1960358 lncRNA upstream 25993 16500356 ~ 16500582 (+) True G1711137
TU1960357 lncRNA upstream 27123 16499191 ~ 16499452 (+) True G1711136
TU1960350 lncRNA upstream 46780 16479545 ~ 16479795 (+) True G1711129
TU1960347 lncRNA upstream 53172 16473061 ~ 16473403 (+) True G1711126
TU1960398 lncRNA downstream 49849 16578665 ~ 16578963 (+) True G1711174
TU1960363 lncRNA downstream 71734 16600550 ~ 16601602 (+) True G1711141
TU1960364 lncRNA downstream 72916 16601732 ~ 16602382 (+) True G1711142
TU1960416 lncRNA downstream 92645 16621461 ~ 16621761 (+) True G1711191
TU1960417 lncRNA downstream 94824 16623640 ~ 16624039 (+) True G1711192
XM_036957099.1 mRNA upstream 169 16318043 ~ 16526406 (+) False LOC110499847
XM_036957102.1 mRNA upstream 169 16318560 ~ 16526406 (+) False LOC110499847
XM_036957100.1 mRNA upstream 1381 16318044 ~ 16525194 (+) False LOC110499847
XM_036957101.1 mRNA upstream 1506 16318043 ~ 16525069 (+) False LOC110499847
XM_036957098.1 mRNA upstream 227983 16291473 ~ 16298592 (+) False LOC110499838
XM_036957109.1 mRNA downstream 65611 16594427 ~ 16600458 (+) False LOC110499856
XM_036957110.1 mRNA downstream 65764 16594580 ~ 16600458 (+) True LOC110499856
XM_036957108.1 mRNA downstream 75443 16604259 ~ 16608641 (+) True LOC110499844
XM_021576924.2 mRNA downstream 211553 16740369 ~ 16742399 (+) False LOC110499863
XM_036957113.1 mRNA downstream 213979 16742795 ~ 16758777 (+) False LOC110499861
TU1960069 other upstream 590154 15931098 ~ 15936421 (+) True G1710901
TU1959941 other upstream 789098 15722528 ~ 15737477 (+) True LOC110500994
TU1959855 other upstream 1035704 15479148 ~ 15490871 (+) True LOC110499821
TU1959289 other upstream 1392987 15133132 ~ 15133588 (+) True G1710321
TU1958684 other upstream 1844367 14679482 ~ 14682208 (+) True G1709840
TU1961165 other downstream 191104 16719920 ~ 16720470 (+) False G1711795
TU1961166 other downstream 191104 16719920 ~ 16720552 (+) False G1711795
TU1961163 other downstream 191139 16719955 ~ 16720470 (+) False G1711795
TU1961164 other downstream 191139 16719955 ~ 16720470 (+) True G1711795
TU1961184 other downstream 211587 16740403 ~ 16741218 (+) False LOC110499863

Expression Profile