RNA id: TU1961190


Basic Information

Item Value
RNA id TU1961190
length 247
lncRNA type sense_over
GC content 0.33
exon number 1
gene id LOC110499863
representative True

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 16740369 ~ 16742407 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GGAAAATGACCCAGAAAAATGGACGTCGAAGGTTTCAAATAGCAAATATACAGTTGGAACTCTTACTGTGATGGTTTTATATCATAGATGAGTCTTGTTCTTATTTTGTGAACTGCCACTTTGAATAGATTGTATCATATAGATTTTCAGACTTTTTAGCGGTTTATTTACATTTTGAACCACAAGGTGGCATTTGTGAGATGAGCTGTTCTtgtaaaatatttaaatattcCTTTCAAATAGCACC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1960419 lncRNA upstream 116110 16625845 ~ 16626051 (+) True G1711194
TU1960418 lncRNA upstream 117668 16624175 ~ 16624493 (+) True G1711193
TU1960417 lncRNA upstream 118122 16623640 ~ 16624039 (+) True G1711192
TU1960416 lncRNA upstream 120400 16621461 ~ 16621761 (+) True G1711191
TU1960364 lncRNA upstream 139779 16601732 ~ 16602382 (+) True G1711142
TU1961189 lncRNA downstream 16412 16758819 ~ 16759573 (+) True G1711804
TU1961193 lncRNA downstream 19027 16761434 ~ 16763632 (+) True G1711808
TU1961195 lncRNA downstream 24346 16766753 ~ 16768908 (+) True G1711809
TU1961225 lncRNA downstream 98865 16841272 ~ 16841488 (+) True G1711836
TU1961226 lncRNA downstream 99832 16842239 ~ 16842448 (+) True G1711837
XM_036957108.1 mRNA upstream 133520 16604259 ~ 16608641 (+) True LOC110499844
XM_036957109.1 mRNA upstream 141703 16594427 ~ 16600458 (+) False LOC110499856
XM_036957110.1 mRNA upstream 141703 16594580 ~ 16600458 (+) True LOC110499856
XM_036957102.1 mRNA upstream 215755 16318560 ~ 16526406 (+) False LOC110499847
XM_036957100.1 mRNA upstream 216967 16318044 ~ 16525194 (+) False LOC110499847
XM_036957113.1 mRNA downstream 388 16742795 ~ 16758777 (+) False LOC110499861
XM_036957114.1 mRNA downstream 388 16742795 ~ 16758777 (+) False LOC110499861
XM_036957115.1 mRNA downstream 388 16742795 ~ 16758777 (+) False LOC110499861
XR_005038540.1 mRNA downstream 388 16742795 ~ 16758777 (+) True LOC110499861
XM_036957118.1 mRNA downstream 19990 16762397 ~ 16825929 (+) False LOC110501007
TU1961184 other upstream 943 16740403 ~ 16741218 (+) False LOC110499863
TU1961166 other upstream 21609 16719920 ~ 16720552 (+) False G1711795
TU1961165 other upstream 21691 16719920 ~ 16720470 (+) False G1711795
TU1961163 other upstream 21691 16719955 ~ 16720470 (+) False G1711795
TU1961164 other upstream 21691 16719955 ~ 16720470 (+) True G1711795
TU1961238 other downstream 171813 16914220 ~ 16943789 (+) False LOC110501009
TU1962172 other downstream 923873 17666280 ~ 17668586 (+) True G1712658
TU1962743 other downstream 1523288 18265695 ~ 18267508 (+) True si:dkey-159a18.1
TU1962859 other downstream 1754740 18497147 ~ 18500874 (+) True G1713262
TU1962997 other downstream 1992384 18734791 ~ 18737436 (+) True G1713384

Expression Profile