RNA id: XM_036957138.1


Basic Information

Item Value
RNA id XM_036957138.1
length 4607
RNA type mRNA
GC content 0.53
exon number 3
gene id LOC110499878
representative True

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 18144533 ~ 18203141 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tgagagagaatataagagagagagagaataggagggagggagagagtgagagagtgagtgccTGGAACACAatttcacacacattcacacacacagggagacggTTCTCTGCTGCAGCTCCCTGCTGGATTTAGTGGATTCACAACCTCTTCCCTTTCACTTGTGGTTGGGTCACTTCACAGGAGAGCGAGCCAACGTGCCCTAGGGGGCCCGGGGAATGGAGGACAGTATGTGACCGGTGCCTAACTAGCCGCTCCGCTTCACTGTCGGCAACATGCATCACCTTCACCGGATGATGGCTTTGTGCTTATGGTGCTCTCTCCTCGCCATTCTTCTCCACACGACGGTGTTTGCGGATGAAGAGGCGGATCTTACGAAGCCGACAGGACCGCCTGCCAGTAAGGGATGGTCCTATTGGCCCAGCTTGTCCATTTTGCCATCACTCCCGGCGGCGCCGTCGTTTCCGTTTTCTTCGCTCAACCCGTTTGGAGGGAAGTCACAGACTAAGAATGCAGGGCCCCAAAGGACCACACCATCAGAGGGACCAACAAAGGAACTGTCAAAGGGACTGATagagagaccgacagagggaCCAACAGAGGGACTGTCAAAGGGACTGATagagagaccgacagagggaCCAACAGAGGGACCAACAGAGAGACAAACGGAGGGACGAACGGAGGAACTGTCAAAGGGACTGATagagagaccgacagagggaCCAACAGAGGGACCAACAGAGAGACAAACGGAGGGACGAACGGAGGAACTGTCAAAGGGACTGATagagagaccgacagagggaCCAACAGAGGAACTGTCAAAGGGACCAACAGAGGGACCAACAGAGGGACGAACGGAGGGACGAACGGAGGGACGAACAGAGCCTGAGAATTCACCGGGACATTCAGGGTctgtggaggagggtattaataAAAGCCCTCAGTCCTCCACCATCACCTCTTGGACTGAAGGTCACCCCAGCTCCACTGAGATAAGAACAGTAACAAACCCACAGACAGTCACTCCTAACAAGAACACACAACCAAACACCCAAGATATCTTAGATTCTATAACCGCTGTCTTAGATTCCATATCCTCTATTTCTATGTCACAGGGGGTTGATATATCCTCCGATAGTCTCACCAGCACAAACATACTGCCAAagacaataacacacacatacctgtcAACAGAAACGTCCCAAACGCCAAAGCACAGTTGGAAGGTCACCACTAAATCTTTCCCCAAGGAAACGAAGATCCAAAATGAACTAGTTCCCCAGGGTGACCCTCTCACAGCCTCTGTCCCATACCTAACGTCCCCACAAACCACAGTCCCCACAACCCTGGTCACAACTCCACCAAGGATCACCGTCAACCTAACACAGGTAGAGGCCACACTGACCAGACAACCCTTTGACTCTGGCACCCCACCCATTTCCCCACAAACCAGGGTCACCACAAGACGTCTGGCCTCGACCGTAAGCACCGACATTGGAACTAAAGAGGCCCCGGTCACCGAAACTCAGCCAAGTCAGAGTTCACCAGACCTGAGTGATTCCGAGGCCAAAGCAGGGCCTGTGGAGGAACGACTGGGAGCAAACACCACCACCAGGACAGACGATAGAACACTAAGGGTTAACTCACCAACACCCGGAGGTCCCCTTCCTGATCCTGAAGACTGGCTGTCCGACCCAACGGGTAGTGAAACCACCTACCTCCCAGACTGCAATCAGGAACATTCGGGAATCTGCAACATCTCCAACACCTGGGCACCGCCCACCACCTCTGACGTCCTCCCCACCGCTAACACCCCCTCCACCAACCAATCAAATAACCCCTTCCTGATTCCGGCCCGGCCCATGTTCGTATCCCTGCATTCTGATTGGAACAGCGCCATGGCCGCCTGGGGATTAGCCTGGGATGCACACGTGTACGGTCTGGGCTCCATCTTCGCCATGGTGACCCTGGCCTCGGCGCTCAACCTGCTGTGCCTGCCCCTGCACTGCCCTTCCGGCTGTGGCTACTTCGCCCTGGTCAGCGTCTTCCTCCTGGCTGCAGGGTGTACCAGGGCTTTCTCCCTCCTCTACGATGCATACGGCCACCAGGACCGGCTGCCCTCCACCGAGGCCTCCCTGCTGCTCTACGAAGCCCCGTTCCCCTGCCTGACTGCAGCCTTCGGCCTGGTCTTCCTGCTCCTCTCTATGCGCTCCAGGATGCAGCTATCCTACTCAGCCTTCCAGAGACCCTGTTTCCTGGCCTGTCTGGTGTTGCTGCACTTCGCAGCAGCTTTTGGTCCTGTAGCACTGCTGAGGCTCTACCAGAGGAGGGCACCCTTCTGCCTCTTCATCTCGCTCATCTCCCGGGGAACGTTTGTGGCGCTGGTTTCTTTTCTATCGGTCgcctattttgtgtttttctgcTACGTACGGGCGGACTCAAAGCACATTTACCACCTGAATAACACCTCGCCCACGCCAGCTGAGCGATACAACCGCTGTCCGTTCGCAGAGAGCAGGGACTGGGACCGTGCGGCTGCGACAGTGTGCCTTTCAGCTCTGTTCTGCCTGGCATGCGCCGGGCTGCAGCTGTACGCCATGCTCCACTCTCTGGGGCTCGCCGGAGGAGCAGATGTGTTCCGCCCCTGGCCTTGGTGGACCTTCCAGCTCAGCTGCAGGGTTTGTGAGGCCGGAGTTTGTCTCACCCTAGCTCTGGTGGTGGCCCAGCCAATCTACTGCTCTGACCACCTTCCCCAGCCTGGAAGCTGCTGGACGGAGCTGCTGGCGATTAAGTCGCCCATTATGCCGGGAACCTACCAGTGGACCCTGAGCCAGCAGGAGAAGCTGGCCATCTGCGACATTGGGCACGGGGAGACAGAGTGCCTACCCCTCTACACGCTGATGGATGAAAGGCTAGGCAGCAGCTTGAACGGCCTGGATCTCCTGTACCACAGCAACCGGGCCTTGGCTTACAGAGACCTGGACCTGAATTTGGATCTGCCTGGCTCCAGCAAGCCCGAGGACAGGTGTGGTGGAGAGGCGTCCGGGGGTTCCTCCTTCACCAGCGACTCCACGGCTGACCTGCGGCCGCCATCGCCCATCAACCTGCGCCGTAGTATTGATGAGGCACTCTTCAGCGAGGACCTCTTTCCCATAAGCCTCTTCAGACCGTCCATACCCTTTTGCTGCAGTGACCTGTCACTCAACATCCCCTACTCCACGTCCACCCTGCCCAATAGTGGCCAGGTGCTTCGAGAGACCCTCTCAGCTGACCCAGGCCTGTACCGGACGACCTCCTGCGTGGAGATGGCCCctcctcccccaacccctctacCAAACCGACCTATGGCAGGCGACACCATCCTGGGtgctccaccatctccctccctgtcctccaacTCCTCTTCCCCAGAACGCTGGAGGGGAAgttcctcctcctgctccctgTACAGACCCTCATTAGGGGGGTCCTCTCTGGTCCTCTGTTCCAGCCCAGAGGGGCACGCCCAACCCCCATCCCTAGGCGGCAGCTCAAGCCGCATTACAGCCTCCAGCCACCAGGgctcacacatgcagagatactATCGCACACTGGGGTCAGCCTCACAGGAGAGTCTTGACCTAGAGTCTGAAGCGGACCGGTCCGTACAAGAGGAGTTCATCAATGTCTGCAGACAGATTGATGCGATGAGCATCTGCAGTGAGACAATTGACCTGTAGGCAGAGCTCTCAACAGTCAAGGGCTAAAGACTGAGGACTGGACTGAAATAAGGTGTTGTGAAGAAGGATTCAAGATGGCGTCACGATCTGTAAGGAGCAACGAGCGGTTTGATTCATCAGGCTAGCCTTCATTGTCAAGAAAGGTAAAACAGTGCGTAAATGAACTGAGGGTTTGTTTCAGAATGTTGACAAGAGTCTTAAGTGCCACATGCCAAGGGGAAATTTGTGacatttttttccacatttgCTATTGAATGATGAAGTTTGATACGTTAATAAAAGTTGCGTTTTCCTGTGCATTTCAAGAGGGGCACAGGAAAGCAAAATACATTTGTACAAAACGTTTTGCATTCAAATAAATAATACTGTGATTGAAATAAGCACTTAATAAACGACTACTGAAATCTTGTTTTAATATTTTAGCATACTCTTATCCAGATTGTGAGTGCATACATTCTCATACTTTTTTTCCTTCTCCATACTGGTCCTCTGTTGGAATCAAACCCTGGTGTtgccagcaccatgctctaccaactgagctacacgggaCTGTACTTTACATTTTCATAGTGTAAAATTGTTATTCAATGCCAAGTTGTTTCAATTCAGTCAAATATATTGTGTTTGTGAGCCTCTACATGAAGAATTAGACATGTTAGAGATGTGCTTTAAGATCCATCCAATAAAGGAAAGCTTGATTTGAACTAAAGGCAACATTGTAGCGGAGCAGCAGTGAACTATACTGGTAGGATAGCACCGATACTATTGTGCTTTAACTTCGGACTGACACACAGTACATTTTATATGAAGCCGCTTGATATTttattaatgtttaaaaaatattttactcAAAACATGATTAAATAAAGAGAAATGTCAACAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1962697 lncRNA upstream 3046 18141219 ~ 18141487 (+) True G1713114
TU1962680 lncRNA upstream 15936 18128384 ~ 18128597 (+) True G1713099
TU1962678 lncRNA upstream 18711 18125507 ~ 18125822 (+) True G1713097
TU1962661 lncRNA upstream 29978 18114254 ~ 18114555 (+) True G1713081
TU1962647 lncRNA upstream 43274 18101028 ~ 18101259 (+) True G1713068
TU1962729 lncRNA downstream 20868 18224009 ~ 18232407 (+) True G1713144
TU1962727 lncRNA downstream 39953 18243094 ~ 18244697 (+) True LOC110499885
TU1962773 lncRNA downstream 112645 18315786 ~ 18318199 (+) True G1713183
TU1962787 lncRNA downstream 134653 18337794 ~ 18338056 (+) True G1713196
TU1962788 lncRNA downstream 135892 18339033 ~ 18339248 (+) True G1713197
XM_036957135.1 mRNA upstream 489026 17344431 ~ 17655507 (+) True LOC110499879
XM_036957134.1 mRNA upstream 824542 17272005 ~ 17319991 (+) True LOC110501011
XM_036957129.1 mRNA upstream 897241 17088969 ~ 17247292 (+) False LOC110499865
XR_002470035.2 mRNA downstream 39953 18243094 ~ 18244775 (+) False LOC110499885
XM_021576935.2 mRNA downstream 43987 18247128 ~ 18268059 (+) False si:dkey-159a18.1
XM_036957147.1 mRNA downstream 43987 18247128 ~ 18268686 (+) False si:dkey-159a18.1
XM_021576934.2 mRNA downstream 43987 18247128 ~ 18268691 (+) False si:dkey-159a18.1
XM_036957148.1 mRNA downstream 67646 18270787 ~ 18290199 (+) False LOC110499882
TU1962172 other upstream 475947 17666280 ~ 17668586 (+) True G1712658
TU1961238 other upstream 1200744 16914220 ~ 16943789 (+) False LOC110501009
TU1961184 other upstream 1403315 16740403 ~ 16741218 (+) False LOC110499863
TU1961166 other upstream 1423981 16719920 ~ 16720552 (+) False G1711795
TU1962743 other downstream 62554 18265695 ~ 18267508 (+) True si:dkey-159a18.1
TU1962859 other downstream 294006 18497147 ~ 18500874 (+) True G1713262
TU1962997 other downstream 531650 18734791 ~ 18737436 (+) True G1713384
TU1963841 other downstream 1181831 19384972 ~ 19446851 (+) False G1714090
TU1963844 other downstream 1227582 19430723 ~ 19446851 (+) False G1714090

Expression Profile