RNA id: XR_005038541.1


Basic Information

Item Value
RNA id XR_005038541.1
length 527
RNA type mRNA
GC content 0.36
exon number 4
gene id LOC118942894
representative True

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 18185346 ~ 18186325 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tgtatcaactatagtgagacagtagtgtagttgaatagagttaactgaggttgtatcaactatagtgagacagtagtgtAAGGTTGAATAGAGTTAACTCAGGTTGTATCAACTATAGTGAGACAGTAATGTAGTTGAATAGAGTTAACTGAGGTTGTatatagtgagacagtagtgtagggttGAATAGAGTTAACAGGTTGTATCAACTATAGTGAGACAATAGTGTAGGGTTGAATAGAGTTAACTGAGGTTGTATCAACtatagtgagacagtagtgtagggttGAATAGAGTTAAATGAGGTTGTatatagtgagacagtagtgtagggttgaatagagttaactgaggttgtatatagtgagacagtagtgtagggttGAATAGAGTTAACTGAGGTTGTATAtagagagacagtagtgtagggttgaatagagttaactgagGTTGTATAtagagagacagtagtgtagggttgaatagagttaactgagGTTGTATAtagagagacagtagtgtagggt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1962701 lncRNA upstream 37924 18146510 ~ 18147422 (+) True G1713118
TU1962697 lncRNA upstream 43859 18141219 ~ 18141487 (+) True G1713114
TU1962680 lncRNA upstream 56749 18128384 ~ 18128597 (+) True G1713099
TU1962678 lncRNA upstream 59524 18125507 ~ 18125822 (+) True G1713097
TU1962661 lncRNA upstream 70791 18114254 ~ 18114555 (+) True G1713081
TU1962729 lncRNA downstream 37684 18224009 ~ 18232407 (+) True G1713144
TU1962727 lncRNA downstream 56769 18243094 ~ 18244697 (+) True LOC110499885
TU1962773 lncRNA downstream 129461 18315786 ~ 18318199 (+) True G1713183
TU1962787 lncRNA downstream 151469 18337794 ~ 18338056 (+) True G1713196
TU1962788 lncRNA downstream 152708 18339033 ~ 18339248 (+) True G1713197
XM_036957135.1 mRNA upstream 529839 17344431 ~ 17655507 (+) True LOC110499879
XM_036957134.1 mRNA upstream 865355 17272005 ~ 17319991 (+) True LOC110501011
XM_036957130.1 mRNA upstream 938054 17088969 ~ 17247292 (+) False LOC110499865
XR_002470035.2 mRNA downstream 56769 18243094 ~ 18244775 (+) False LOC110499885
XM_021576935.2 mRNA downstream 60803 18247128 ~ 18268059 (+) False si:dkey-159a18.1
XM_036957147.1 mRNA downstream 60803 18247128 ~ 18268686 (+) False si:dkey-159a18.1
XM_021576934.2 mRNA downstream 60803 18247128 ~ 18268691 (+) False si:dkey-159a18.1
XM_036957148.1 mRNA downstream 84462 18270787 ~ 18290199 (+) False LOC110499882
TU1962172 other upstream 516760 17666280 ~ 17668586 (+) True G1712658
TU1961238 other upstream 1241557 16914220 ~ 16943789 (+) False LOC110501009
TU1961184 other upstream 1444128 16740403 ~ 16741218 (+) False LOC110499863
TU1961163 other upstream 1464876 16719955 ~ 16720470 (+) False G1711795
TU1962743 other downstream 79370 18265695 ~ 18267508 (+) True si:dkey-159a18.1
TU1962859 other downstream 310822 18497147 ~ 18500874 (+) True G1713262
TU1962997 other downstream 548466 18734791 ~ 18737436 (+) True G1713384
TU1963841 other downstream 1198647 19384972 ~ 19446851 (+) False G1714090
TU1963844 other downstream 1244398 19430723 ~ 19446851 (+) False G1714090

Expression Profile