RNA id: XM_036957143.1


Basic Information

Item Value
RNA id XM_036957143.1
length 3876
RNA type mRNA
GC content 0.49
exon number 15
gene id LOC110499883
representative False

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 18203539 ~ 18232189 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gtgggaggagaggggatgtgacGCTTCCATTTTCGACGCTTCAGCGAACATATTCTTCTTCATAACGCGAATACACTGTAGCAGCGACAGGCAATCAAATTTGGACCAGCCTCGCATCATCACTTGAGTTTGTAGTAGGGGAATTCATTGTGGGTTGGTTACCTCCACAATAGAGAAAGCACACATTGTTTCCGCTCATTTTggacttgctagctagctacagctgGAAAGTTCGCATTTCCGAACACCTTCAACGTGGTCAGCTTCAAGAGGTAGAAAACGCATGGCTGATTACCTGATCAGTGGTGGTACGGGCTATGTCCCAGAAGACGGACTCTCCGCACAACAGCTTTTCTCCGTTGGAGACGGCCTCACCTACAAATCTGCTCAACAACAGTCTGTTGTCGCTGATGGTCAAACGGCAGAAGAGCTATGCTCTAAAGGCGACGGGTTGACTTACAAcGACTTCCTGATTCTGCCGGGCTTCATTGATTTTGCCTCGGACGATGTGGACCTGACCTCTGCCCTGACCAGGAAGATCACCCTGAAGAcgcctctcatctcctcccccatGGACACAGTCACAGAGTCATCGATGGCCATCGCCATGGCGCTCATGGGAGGCATCGGCCTCATCCATCACAACTGCACCCCTGAATTCCAAGCCAACGAGGTCCGCAAGGTTAAGAGGTTTGAGCAGGGCTTCATCACAGACCCTCTTGTAATGAGCCCGCGTCACACGGTGGGGGACGTGTTCGAGGCCAAGACTCGCCACGGCTTCTCTGGCATCCCTGTCACCGAGACTGGCAAGATGGGCAGCAAGCTGGTGGGCATCATCACCTCCAGAGACATCGACTTCCTCTCCGAGAAGGACCACAGCCGACCACTGGAGGAGGCCATGACTAAGCGGGAGGAGCTAGTGGTGGCTCCAGCCGGTGTCACGCTGAAAGAGGCTAACGACATTCTACAGCGGAGCAAAAAAGgcAAGCTGCCCATCGTGAACGACAGTGATGAGCTGGTATCCATCATCGCCAGGACAGACTTGAAGAAGAACAGGGACTACCCCCTGGCCTCCAAAGACTCTCGCAAACAGCTGCTGTGCGGAGCCGCCATCGGCACCAGGGACGACGACAAGTACAGACTGGACCTACTGATGCAGGCTGGGGTCGACGTGGTCGTACTGGATTCCTCACAAGGCAACTCTGTGTATCAGGTCAACATGATCAACTACATCAAACAGAAGTACAGCGAGCTGCAGGTGGTGGGAGGGAACGTGGTGACGGCAGCCCAGGCCAAGAACCTGATTGATGCAGGAGTGGACGCTCTGAGAGTGGGCATGGGCTGTGGCTCCATCTGTATCACCCAGGAAGTGATGGCGTGCGGGCGGCCTCAGGGCACCTCGGTGTATAAGGTGGCAGAGTATGCTAGACGTTTCGGTGTGCCAGTCATCGCAGACGGTGGCATTCAGACCGTGGGTCACGTGGTCAAGGCTCTCTCACTCGGGGCATCCACAGTGATGATGGGCTCGTTGCTAGCGGCGACCACGGAGGCTCCGGGGGAGTACTTCTTCTCGGACGGCGTGCGGCTGAAGAAGTACCGCGGCATGGGCTCTCTGGACGCCATGGAGAAGAGCACCAGCAGCCAGAAACGCTACTTCAGTGAAGGGGACAAGGTGAAGGTGGCTCAGGGTGTGTCCGGCTCTGTTCAGGACAAGGGCTCCATCCACAAGTTTATCCCCTACCTGATCGCTGGCATCCAACATGGCTGTCAGGACATCGGCGCCAAGAGTCTCTCTGTTCTACGCTCCATGATGTACTCTGGAGAGCTGAAGTTTGAGAAGAGGACCACGTCTGCTCAGGTGGAAGGAGGAGTCCATGGGCTTCACTCttacGAGAAACGACTTTACTGATGGAGGGGCCAGAAAGAAGCGGACTAGGGCCGCCCCCGACGCCCCCACCCCCGTTGTGACCAAACGTAACCGCCACATCTGACACCCACCTCATCACTCTCCCTGCCGACTCCCCACACACCCCACGGGAGAGGTCTGGGGGGGAACACCTGCAAAACAAACACCATCACCTGGGAAACATAGGATTTTGCACTTACGAAGCGGAACATCAGGGTTTTCACCATAACCCCCTCCCAGAATACCGGTCCCcttggtgtgtgtgagagcgtgttGAAGGAAgtatttgattgtgtgtgtgtgtgagagagagagagagtgtgtgaggatAAACTCAGTGAAGAAGGTGCTGTTATGCTATCTTCCTCTTCCTGGTGAAACTGAGAGAGCCATGCTGTCACCCCTCTGTATTCCCTGGGATCTGCTCGTACCGACACCTCCATCAGAAGCCACAAACATCCCAatcaaactatatatatatatatgtggaaAAACACTTGTCTTGCTACTCTGTGTGCAAGTGTATTGTGGCAATCCTCCTTTATCTATGTAGTTAGCTCTGTTTATGCAGAAATATGTTAACTGCTTTGAGAAAAGTAGATTGTTCTGTTAAACTTTTGACTGTGATTTAACTGACAGACTCATTGGCTGGGACTCTAGACTAGGTGACGTTCCCTCGCCGTAGTGGCCATGTCATACCCCCCTTAGTCGACGTGAACCAATAAACTAGTGGCCTATCACAGTGCCGGTAAACAATGGGTAATACGATAATCTTTTAGACTGGAAGGAAACGAGTTTCAAGAAAAATTGTTTGATTTAAAAGCTGtaaagcagggttccccaactggcatcCCCCGTGCCAAATTTGACCCACGTTGTTTCATTTGCCCCCGCCCCcacagtaaataaataaataattattatgCTTGGAACAAAAGAGTGTAAAAACACCAGTTAATCAGaaccaagtgattttaatttgggatatctgttcccaagtattcctacAGATAATACAGAGATGTCATCGTATACAAAATGTAAGCAGGGTTTGAAATTATTGTTTAAGttatattatatctgtttggacctcctgcggtcaatttgcagtctacaaatgatttgtaattatgttccggcccctgCCCATCCACCCAAGAAATCgtcccgtggctgaatctagttgacgaTCTCTGCTGAAGAAAGTCCCAGGGGCTCGAAGGAGCATGAAGGGTTTTGATATGTAGGCTTTTTAGTTTTTTAAAGCCTCAACATGGCTCTATTTATATTCCGCTTTTTTCTAATTCCCTACATACTGCCAAATGTATCAACATGCTCTCTGTTACACTGTAGTGTTATTAATACTAAAAGCCCAAATTTAAAGCTACGAATCGCCAGCAATGTAGTCCCTCGCTCCACCCCTGTCCCAGATTGTGGCACCAATTGCTAGCAGCTTTGACCTGCTCTGATTACCAGAGATATGCCTTGAAATGGGGGTTGTCACGACGGAAAGTCTTAAATTCCCGTAAGAACTGTGTTGTATGTGCATGGCGCTATACATCCTCCTCACCCCCTTTCTCACTGAGATACCGTATCTATATCATTCAGCTTGTGTAGGAATAGATTTTCTAACGTTTTTCGTAAACTGTTCTTTTTGCCAGATGTTTTTTTTAGGATGTCTCGAAGCTGTAGGAGTGACTTTCTTTCCGTTTTGTGCTAATGTACTTTGCCCTACCGGGACCTCACTTGACTATCAGTACTCTTACAGTTGACATGAATATTAAGTAAATATGTACATGAAGATGTATGGAGaattatatacctgtatcctgtttGAAATGGTTGTTTGCAGTCTCCCACCTTTAGTTATGAGAATCTCCACTGACTATGAAACAGGCCTTGTTTACAATGGGATTACAACAGAAACCGGTCCCTAATGCTGTAAAACAATAAAAGTCCAAATATGTTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1963078 lncRNA downstream 50973 18152184 ~ 18152566 (-) True G1713448
TU1962687 lncRNA downstream 73818 18129561 ~ 18129721 (-) True G1713104
TU1962665 lncRNA downstream 85406 18117933 ~ 18118133 (-) True G1713085
TU1962655 lncRNA downstream 95850 18107423 ~ 18107689 (-) True G1713075
TU1962633 lncRNA downstream 112190 18091098 ~ 18091349 (-) True G1713055
TU1963140 lncRNA upstream 55753 18282526 ~ 18283752 (-) True G1713503
TU1963141 lncRNA upstream 57015 18283788 ~ 18285618 (-) True G1713504
TU1963162 lncRNA upstream 88935 18315708 ~ 18318133 (-) True G1713525
TU1963178 lncRNA upstream 123501 18350274 ~ 18350487 (-) True G1713540
TU1963183 lncRNA upstream 128160 18354933 ~ 18355836 (-) True G1713544
XM_036957136.1 mRNA downstream 69188 18130099 ~ 18134351 (-) True LOC110499880
XM_036957137.1 mRNA downstream 69194 18130099 ~ 18134345 (-) False LOC110499880
XM_021576933.2 mRNA downstream 722153 17476135 ~ 17481386 (-) True LOC110499875
XM_036958474.1 mRNA downstream 877678 17322647 ~ 17325861 (-) True LOC110518924
XM_036957133.1 mRNA downstream 1015583 17181446 ~ 17187956 (-) True LOC110499869
XM_021576953.2 mRNA upstream 427262 18654035 ~ 18657692 (-) True LOC110499895
XM_021576955.2 mRNA upstream 456618 18683391 ~ 18701775 (-) False LOC110499898
XM_021576956.2 mRNA upstream 456618 18683391 ~ 18701775 (-) False LOC110499898
LOC110500916 mRNA upstream 475141 18701914 ~ 18707657 (-) True LOC110500916
XM_036957170.1 mRNA upstream 636770 18863543 ~ 19065791 (-) False LOC110501015
TU1961918 other downstream 907804 17295519 ~ 17295735 (-) True G1712424
TU1961507 other downstream 1199839 17002614 ~ 17003700 (-) True G1712050
TU1961366 other downstream 1426535 16765800 ~ 16777004 (-) True LOC118942893
TU1961353 other downstream 1457675 16742840 ~ 16745864 (-) True G1711947
TU1961337 other downstream 1479270 16719933 ~ 16724269 (-) True LOC110501003
TU1963247 other upstream 243740 18470513 ~ 18470817 (-) True G1713604
TU1963290 other upstream 367831 18594604 ~ 18605517 (-) True G1713637
TU1963377 other upstream 442061 18668834 ~ 18669325 (-) True G1713719
TU1963419 other upstream 538687 18765460 ~ 18765804 (-) True G1713755
TU1964391 other upstream 1224427 19451200 ~ 19453678 (-) True G1714475

Expression Profile