RNA id: TU1962727


Basic Information

Item Value
RNA id TU1962727
length 1425
lncRNA type sense_over
GC content 0.41
exon number 2
gene id LOC110499885
representative True

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 18243094 ~ 18244775 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GAAAGAGACTCACATTAAATCATTAGCAGGCCTATGTATCAAGAATTGGAAATTCCCAACGATTTGATGATGTCAGTACACACAAGCCTTGAAGCAAGAGAGCGCTGCGATGCATCATGACATTGCGACATTGCCGTGTGATATCAAGAGGGGGGTAATTTATTTCCCTCGACTGTTTTCAAAGCGTTTTAAAGAAAACTTGAGGAATATCTAAATCCCGTGTCGTCATTAGCAAGGAAAGTCTGTCTTCCACGCCAATCTTGGGGCGAGAGTTCTACTACTCTGCACAAGTTGAAGTTTAAAATCGTCAGGCATATTGTGACGCTGCGGTTGTTCAACCCAAGACCACGTCCATTTAACTGGAGAAGCTATGATGACAGACGTCTTGAAGATGTTTTTTATCGGGACAGCGTTCACTGTCCTCGCAGCGCTGATGGGAATGGTGGATTCATTTGGTGGTCTCATGTATGTCCAAGACGCGGATCCTGCAGATTATTTACAGTTGGACAGCAGTACTGACATACGGATGTCTTCAACCCATTCGAGAGGTTCAGGGAGTACCAAACGCATTGAATGATGATGAGGACGTCATGTGGAGTGGAATTAACACGAACAGGCTTGGTTTATGTTATGTTTTCGTTTGTAAATGACTGCTTGCACAGTACAATGTGTACACAGATTTTTACAAAACATTATTGAGCCTTTCATCATGGTTCGCTTTCAGTTTCACTAGTTGGTGTCCCACTCCCATTGTGCAGAAACTGGCTGAATCAGCGCtggttccacgtcatttcaacccccgaaaaatctatgtgatgacgttgaatgaGCGTGGATTGGATTTgtaaaaagtcatcaacgtatgGGCACTCTGTCTCTTTTTTTAACCTGAATCCAATGACATTgtgatattttttgtttgttgaattGTGCAATTTAGAACTAGACGTCGAACTGACGTCGGTGCGCAGTGGGGTTTGATTTATACAGGTCACTACGGATTTGATGAGTTGTTTAATTTGTTTTGCACATTTGAAGAACACCCTAGTTGATGTTTATAGTAGGCTATTACTAAAGTATTAGGTCATATTGACAGGTATTACTATGTAGTTATATCCACTCTATACTATACTAATACTTGGTAGGGCAGCAGGTAGAGCGTTGGGGCAGTAACTGAAAGATCGcaggtttgaatccccgagctgactaggggGAAAAATATGTCTGTTCACTTGAGCAAGTTACTTAATTTAGCAAACGCTAAATCGCTCTGGATgggagcgtctgctaaataacaaaaatgtaCTAATCTGTATACATGGTATTTGCCTATATCGTGTAGGCTATTTGTTGTATATTGAAGATCACATCATGTGTAAAAGAAAAAGGGCTACATTATGCACTAATTGACTCTTCATCATGCAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1962729 lncRNA upstream 10687 18224009 ~ 18232407 (+) True G1713144
TU1962701 lncRNA upstream 95672 18146510 ~ 18147422 (+) True G1713118
TU1962697 lncRNA upstream 101607 18141219 ~ 18141487 (+) True G1713114
TU1962680 lncRNA upstream 114497 18128384 ~ 18128597 (+) True G1713099
TU1962678 lncRNA upstream 117272 18125507 ~ 18125822 (+) True G1713097
TU1962773 lncRNA downstream 71089 18315786 ~ 18318199 (+) True G1713183
TU1962787 lncRNA downstream 93097 18337794 ~ 18338056 (+) True G1713196
TU1962788 lncRNA downstream 94336 18339033 ~ 18339248 (+) True G1713197
TU1962794 lncRNA downstream 106340 18351037 ~ 18351273 (+) True G1713202
TU1962795 lncRNA downstream 107488 18352185 ~ 18352390 (+) True G1713203
XM_036957138.1 mRNA upstream 39953 18144533 ~ 18203141 (+) True LOC110499878
XR_005038541.1 mRNA upstream 56769 18185346 ~ 18186325 (+) True LOC118942894
XM_036957135.1 mRNA upstream 587587 17344431 ~ 17655507 (+) True LOC110499879
XM_036957134.1 mRNA upstream 923103 17272005 ~ 17319991 (+) True LOC110501011
XM_036957131.1 mRNA upstream 995802 17088969 ~ 17247292 (+) False LOC110499865
XM_021576935.2 mRNA downstream 2431 18247128 ~ 18268059 (+) False si:dkey-159a18.1
XM_036957147.1 mRNA downstream 2431 18247128 ~ 18268686 (+) False si:dkey-159a18.1
XM_021576934.2 mRNA downstream 2431 18247128 ~ 18268691 (+) False si:dkey-159a18.1
XM_036957148.1 mRNA downstream 26090 18270787 ~ 18290199 (+) False LOC110499882
XM_036957149.1 mRNA downstream 26290 18270987 ~ 18290199 (+) True LOC110499882
TU1962172 other upstream 574508 17666280 ~ 17668586 (+) True G1712658
TU1961238 other upstream 1299305 16914220 ~ 16943789 (+) False LOC110501009
TU1961184 other upstream 1501876 16740403 ~ 16741218 (+) False LOC110499863
TU1961163 other upstream 1522624 16719955 ~ 16720470 (+) False G1711795
TU1962743 other downstream 20998 18265695 ~ 18267508 (+) True si:dkey-159a18.1
TU1962859 other downstream 252450 18497147 ~ 18500874 (+) True G1713262
TU1962997 other downstream 490094 18734791 ~ 18737436 (+) True G1713384
TU1963841 other downstream 1140275 19384972 ~ 19446851 (+) False G1714090
TU1963844 other downstream 1186026 19430723 ~ 19446851 (+) False G1714090

Expression Profile