RNA id: XM_021576934.2


Basic Information

Item Value
RNA id XM_021576934.2
length 3500
RNA type mRNA
GC content 0.50
exon number 21
gene id si:dkey-159a18.1
representative False

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 18247128 ~ 18268691 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gggtaacgatgcttcgtgggtgactgttgttgatgtgtgcagagggtccctggttcgcgcccgggtatgggcgagggacggtctaaagttatactgttacatatgtatGGACATCACTTGGATGCGGCATGGGGGCGAACAACCGGCAACAGAATTTAGCTAAATGACTCGTCAAACATGTGTCTCTCCGCCCCCATCCATTCAAGTGCGACACTTGTCATTTGTCGCCTGAAGCGATAGGCAGTGCTAGTCTGTCATACGTGACCCGAACTGTGGGATTTAGGATTTTACCATTATTTAGCCCACCACATCAAAATGACTTGGAGACTGTTGGTCCTCGGGGGGGCATGCTTGCTTCTTATGGGTGTGACGGGTCAGTGCAAAGAGCAACGAAACCGGAGAACGGTGTCTTTCCATCAGACTCAGCAAGATGGGGACCAACGCCAAGTCCTCTCACGGCCAGAAAGGGATACCACAGCTTCTCCAAGACCCACTTTCACCGCTTGTAAACTCCCTCTCACACCATTAGAACACCGGGTGTTGGATGAAAATACACACGAGacaGGGTTTCATGGTGACGATGGCTCCAGTTTTACTGTCACATGGGTTGGAGACGGGACAGGAGTAATCTTGGTGTTGTCTACAATCAGTGCTCCTCTAGATTCCTTCTTCGAGGGCGGTTCTTCACGATTGTACCGCAGTGCAGACTATGGCAAGTCTTTCCATGATATTTCTCATCTCATCAACAACACCTTCATAAGGAAGGAATTTGGACTTCTGGCTGGACCAGGGAACTCTCAACAGGTGATTCTGACTGCAGACACCCCGGTTTTGGACAACACCGGTGGCGTCATCTTTACCTCAACTGACGCCGGAGTGTCGTTTATGTCTGTCCAGCTGCCTTTTCACCCGGCCCAGCCAATCACCTTCCACTTCTTGAATCCCGAGTACTTAGTAGTCATCAGCATAGATGGCGGCCTGTGGCTTTCTCTGGACTTTGGGGCTGTGTGGAAAAAGGTTCACGAAGGAACACAATCTTTCACGTGGGGCTCCGGCATCACTCTCTTCTTCAGCTTCAGTCCCAAAGGAACAGTGGAGGCAGACAGAAGAGGAGAGCTCTTCCTAAAGAGGACAGAAGACCTGGGGAAGACATTCACCACCGTGGCACACAGCATCTTCTCCTTCGGCTATGTAGGAGGCTTCCTCTTCACCTCCGTCATAGAGAcactgGGAGCCCCACGTGTCATCTATGTGTCCTCAGACCAAGGGGACCACTTCAACAAAGCCCAGCTCCCCTCCGCCTCCACTGAGCAGttcTACTCGGTTCTGGATGGGGATGAGGACATGATTTTCATGCATGTGGACAATCCAGGAGAGGAAAGCTACTTTGGGACGGTGTACACATCAGATGACCGGGGCATCCTGTACTCTAAGTCTCTAGAGCGCCACCTGTTTGGTGGGGAAGGGAAGAGCGACTTCACCAACGTCACCTCCATGAGAGGAGTGTACCTCACCAACATACTGGAGGAGGACGGCCGCATTCGGACAGTCATTTCATTTAACCGAGGGGGAGAGTGGACACTCCTCAACAAGCCCCAGAATGTTGAGTGTGGTGAGGATTCAAGAAATGATtgtaacTTGCACATCCACGGTGAGCACAGTCGCTACAACGGCATCACTCCCATGCTGCCTCTCTCTGACCCCACTGCCGTTGGCCTTGTCATCGCCCACGGCAGTGTGGGGGACTCCATCTCGTCAACACGGCCTGACGTGTACGTGTCAGAGGACGGGGGGTACAAGTGGAGGGGTTCCCTGAGGGGGCCCCATCACTACAGCATCCTGGACGCTGGGGGGCTCGTCGTGGCTGTGGAGGCCCACCCCATGGACGGCCAAATCAACACCATCAAGTTCTCCACAGATGAGGGCCAGTGTTGGAAGGTGTACAACTTTACAGAGCAGCCCATCTTCTTCGCTGGCCTGACATCTGAGCCGGGCACCAAGACCATGAACATCAGCGTGTGGGGTTACCGGCCCGAGGATGACCACCAGCCCATGTGGGTGGTGGTCACCATTGACTTCCAGAGTCTCCTCACCAGAGAGTGTGGTAACCAGGACTATGTTCAGTGGTTGGCCCATGCCACAGGGGGCGGGGACTTGGCCACAGAGGGGTGTGTCTTGGGCTACAaggagaccttcaggaggctgaGGAAGCTGTCCGTCTGCAGGAATGGACGGGACTACGTGGTGAGCAGGCAGAAAAGCCCCTGCCCCTGCACCAGAGAGGACTACCTATGTGACTATGGTTACTATCGTCATGAGAACAGCTCAGAGTGTATGAGACAACTGGACACTGCAGACCACGCCCTGGAGGTGTGTCtaaatggagaggaggaggagcttaGGACTTCGGGGTACCGTAAGGTTCCCAGTGATAAGTGTGAGGGAGGTTTCACTCCCCTGCGCATAAAGGAGACAGTCAACAGGCATTGTGGGAACTCTAGTCAGCCCCCCACTGCCAGCCCATATTCTGAAACCCCGAGAGAGAAGATGCTGTTGATCGTAGTTTGTGTTGGATCAGGGATTGTCATTCTGGTGGCTGTTGCCGCTGCTGTCTATACTGTAAGGAGAATGGGCTATGGAAATAGCTTCGGGACGACGACTGCTCCATTGCCGCCGACCCAGAGAGTGTCGCCAGTAGCAACGGAACATCAGTCTTCCCAGTGGATTCAGATGATGATCTTATTGAATGAACAACATGAGATTAAATATCTTGACGATGATCTCCAGAGCTTGGCCATTTGGATGTATGGCATTCCACTTGTTGTATTACGTACCTGTTGCATCTCAATGGAAAGATGTCTAGGGTTTGTAAGGAACAAATTGCAGATGTCATGTAGATGGTATGCAGATGTCCCAAGCTATTTATTGAGCGAAGAACACTTCCCACTGGACACTGGTTGAACCAACGTAGAATAGAAGTTTATTTCAAGTTTCACTGCTCTGTTTTTAAGTATTTGATGAATTAACAGTTTGTCTCTGTCTGATGATATTATTAATGCGTGGAACACTTTCTTCAACTTGCACAATTTTGTATGGCGCTTGCAACGCAAttgatagtgggttcgattcccgggaccacccttgtgtaaaatgtatgcacgcatgactgtaaatcgatttggataaaagcgtctgctaaatggcatatatttattattataattattattattgttattaccaCTGTTCACTAGTCTGTATTTTGATGAGGCCCTGAATAATGTGCATTCCTAATAAATCAATACAGTAATGTTAGAATGTATGTAATGGAAATAAAGTGCCTGATTACCTCAATTATTCTGTATTTACTCTGCAGGAACAATCAACTGTTATCTGTTATTCACTATGCATTtattcctcatgtctctatttctttatctttaactctgcattgttggaaaaggccccgtgagtaagcatttcactgttagtctacaccc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1962727 lncRNA upstream 2431 18243094 ~ 18244697 (+) True LOC110499885
TU1962729 lncRNA upstream 14721 18224009 ~ 18232407 (+) True G1713144
TU1962701 lncRNA upstream 99706 18146510 ~ 18147422 (+) True G1713118
TU1962697 lncRNA upstream 105641 18141219 ~ 18141487 (+) True G1713114
TU1962680 lncRNA upstream 118531 18128384 ~ 18128597 (+) True G1713099
TU1962773 lncRNA downstream 47095 18315786 ~ 18318199 (+) True G1713183
TU1962787 lncRNA downstream 69103 18337794 ~ 18338056 (+) True G1713196
TU1962788 lncRNA downstream 70342 18339033 ~ 18339248 (+) True G1713197
TU1962794 lncRNA downstream 82346 18351037 ~ 18351273 (+) True G1713202
TU1962795 lncRNA downstream 83494 18352185 ~ 18352390 (+) True G1713203
XR_002470035.2 mRNA upstream 2353 18243094 ~ 18244775 (+) False LOC110499885
XM_036957138.1 mRNA upstream 43987 18144533 ~ 18203141 (+) True LOC110499878
XR_005038541.1 mRNA upstream 60803 18185346 ~ 18186325 (+) True LOC118942894
XM_036957135.1 mRNA upstream 591621 17344431 ~ 17655507 (+) True LOC110499879
XM_036957134.1 mRNA upstream 927137 17272005 ~ 17319991 (+) True LOC110501011
XM_036957148.1 mRNA downstream 2096 18270787 ~ 18290199 (+) False LOC110499882
XM_036957149.1 mRNA downstream 2296 18270987 ~ 18290199 (+) True LOC110499882
XM_021576941.2 mRNA downstream 97576 18366267 ~ 18374630 (+) True LOC110499881
XM_036957150.1 mRNA downstream 242984 18511675 ~ 18516033 (+) True LOC110499888
XM_036956481.1 mRNA downstream 299177 18567868 ~ 18596759 (+) False LOC100301653
TU1962172 other upstream 578542 17666280 ~ 17668586 (+) True G1712658
TU1961238 other upstream 1303339 16914220 ~ 16943789 (+) False LOC110501009
TU1961184 other upstream 1505910 16740403 ~ 16741218 (+) False LOC110499863
TU1961163 other upstream 1526658 16719955 ~ 16720470 (+) False G1711795
TU1962859 other downstream 228456 18497147 ~ 18500874 (+) True G1713262
TU1962997 other downstream 466100 18734791 ~ 18737436 (+) True G1713384
TU1963841 other downstream 1116281 19384972 ~ 19446851 (+) False G1714090
TU1963844 other downstream 1162032 19430723 ~ 19446851 (+) False G1714090
TU1963839 other downstream 1162130 19430821 ~ 19618485 (+) False G1714090

Expression Profile