RNA id: XM_021576941.2


Basic Information

Item Value
RNA id XM_021576941.2
length 4488
RNA type mRNA
GC content 0.48
exon number 2
gene id LOC110499881
representative True

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 18366267 ~ 18374630 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CCTTTCCTCCAACACATTCGTTCACTCTGGTGGAGTAAAGTGACATTGAAAGGGTGCCTCAACGTGGCATCCTAGAGAAAGACCCCTCTATTTACCAACAGCCGTCACCACACTGTACCGTCCTGGCACACGTAGTACCCTCCGAAACGTCCCTACCTCGACTAATAAATGACCATCATAGGCGCCAGAGAAATAAAACAAGCGAAAGACACGGATCATTATCCGAACGTGGAGAGAAAAACAACGAATCATTTTCGGAATCATATGTAGGAAAAGCGCACGAATCGTCGTCGCAGTTGCCTTCTCAATGCATACCCTTTGTGCTCGGGGAACGATGAAACCAGAGATTAGCGCCGCGGTCGGGTTTCTGTCGAGATTTCTGCGGATAAAAGGACACGTAAATGACAGACAGCTTCAATCATTCAGCGCAAGTttacaggatattttgtcagaGCAATACAAGCACCACTGGTTCCCCGACAGGCCCTGCAAGGGCTCGGGCTACCGCTGCATCCGCATCAACCACAAGATGGATCCCCTGgtggggcaggcaggccagcgcaTCGGCCTGACCATCAATCAGCTCTACCTGCTGCTGCCTAGTGAGCTCACCCTCTGGGTGGACCCCTTCGAGGTGTCCTACCGCATCGGCGAGGACGGCTCCATCTGCGTGCTCTACGAGTCCCAGCCGGTGGCCCCGGCGCCGTCGGGAGGCAGTGCGGTCACCTCGACCCCCATGGTGGACAGTCACATCAGCTGCAAGGAGGCGGCGGGGATGCTGGGCAGGACCAGCCCTTCCAAAGCCTACAACATGATGACTATGTCCAGCTAAGGGCTGCCACCCGCCACGTCGGGTCGTGGGTTTCGCCCTAGTTGGTCGATGGCGAACCTTTTTAAAGCTAAaaagaaatgaaatgaaaaagagaaaaaaaaggaggAGAAAAGGCAGAGGATGTGGCCTATCGTCCAGGTGAAACCTTGTAGGTTTGATATTTCTTTCTCCTTCCTCGCTCCATAgtctgttatgttgtgttgtgggaTCTACCGGAGGCTTCGTTTTTTTTCcctgggggggcgggggggggggggggctgtgtggaGCGTGGAGCTGTTGGGGGCAGCTAAAACAAACCAAGAATCCGAACAGAGAAACAGCGCAGAGAAGGGGctgctttttgtttttgtttttttacacagATCTATCATTGTTGACTTTGCACTTTCTTCTCCACGTGGTTACAATGGGTACCAtgtcaccaccacccccaccaccctctCAAAAGCTTCAAGGAACTGCTGTCAAGAACCGTACCGTTAAATTTCAGCCTTTTATCTACTTCCTGTTGTTATTGGGTGTACTTCCTGTCTAGGAAGGAAGTTAAGGGGCTGAGGTCCGGACTGTGCCTATTTCTAGGTCAGTCTCTGGGGAAACGCCCTGAGTCATTTTCTTCTAAAACCCAGTTTTTGGACCATAGGGTATTTCTTTACCCCCAGAGGCTGCCCCATATACCAGCGTCGAGCTTCAggaagcccctctccctccatatgGAAGTGCAGTGGAATGCGCTGTGACACCTGTTGCTAAGGACAGTAGTGTGTCACAGCGCACCCCACCAACACCCCCAACCATGTATGTGTAGCTTTCTGGGGAGGGCTGGGTATTTGTCCCCTCCCCTTCGATCAATGTTGGTTTGAAATTCACAATCAAGTTCTCGTTTTGtttatatccctccatccccaccctGACCTTTGGCCCTCTCCAAATTCAAAGTGTAGCATAGGTGGCACTATATTCTCACCGAAATCTGGAtcgtttgttttggttgttgtggCCCTGTCAGAAGAAATGACATTGAATGCACTTTTGACATTTAGATTGTGTGGGATGTGTACTTCTCGAGTAAACCATCTTCATTCCATTCGCTCCAATGTCATCTTTCATGAGTTCCCCtcctttttttttgtaaattactCACAGCTCTTACGTCAGGCTAGACCCCACTCTATAGAATTGGGGAGAGTAACTGAAGGTTTTAAAAAGATTTCACACTGTAAGCATTTCATTCAGATCCGTTCAGGTGTTGGTAGGTAGGTGCGGTTTGGTGTCGTGTCAGGTTAGGCGTCTGTTGTCCGTTTGTAAGGCACTTTTCTCGGAAggccaacgcacacacacacacacacacacacacacacacacacgcacacacgcacacacacacagatggcaaGACACTTATAGAACTCTGATAGATCTCTCTGCAGCTGTCGAGGGGTGTGTGAGTGTAGCCAAAGGGAAGTCTGTACGCCCCTGACTGTTTCTATCCAACTCAGTCCCAATGGCCTTGTCAGGCTTTCTCATGTGTTTTTGTTAGACTTTGTTCTTGTATTTGTGATTGAAGATGAGTCCAAGGCTTTCAACACCTCTCCTTTCTTCTGTCTCTCAGTTTGGGTGAGGGGTGCGTTGCCCAACGTAGGACTTCAATGTTACACCTATGAGCCATTCTCTGGAGAACCGAGAGAGAACCAGCGTAATGTTAGCCAGCCTGGTTCGAGGTGCTGCTGGACCCTCTCTGGAGGTGTTCCTGTCAGGGCAGACAGACACAAGAAGCCGCTCTGGTGCCACATATCACCCACAGCCAGCTAACCAACCAGCCAACCCCCTCCCCCCAATAGCAGTACGGAGATAGCAGTAACACATATCATCTATCCTCGCCCCAGGGGAGGGAATGGAGGTGGTGCGGGGGCCAGGGCCGGATACTCTCGTCCAGGGCAGCTACAATCCCTCCGGCCCCCTCTAAACTAACCTCCACCCAACCAACTTGGCGGTGGAGAGCAAAGCCAGCACATGCACTCAGCGCACTCCGTCTGCACTGGGAGCCCACATAGAGACAGGCAACAAAGAGGAGTCAAAGGATAGGAAGTGATGGTACACAGTCCAAGTTTATTTTTTTCTTAGGCTGAGCACTGAACTAGTTTACATGGGTGCAATAGGACGATGGTGGTGTCAGTCGTTCTATAGCTCACTCCTGGTTGGCCGCGCCACAGACAGACGATGTGACAGGTTGTGGGGTTTCGGGGCTTTTATCCGCTAAGCTGGCCAGGCTGGGCACCAGCCCATCAGACCTACATGTGCTGCTTTAAGCTCCCTAAGCATAGAGGATCATGGGTAATGGATCTGTGGTTGTTGATGCACTGCACACCCTATCCTCCCTcatccactcccctcctcctcactgtcctccctctctccatttctcctggTGCTCCTTCAGCAATCTGTGGAAAAAGCAGTGTCTCCACATGAGCCAGATGGACATGTCTGAGAGAGTAGCCCAGAGctttgttgttgtggttgaaAACCAGCTTTTTAAAAACCTTGCAGCTCCTCTATTGCTTCGATTATGCCAGCTATCGATGTTGTTATGAGATTGGTCTGTGTTTCAGACGTAGCAAGTTGTCCCTCTTTTTGCTATATGTATTTTAAAGTCACAGAGGTAGCAtctcatcacccccccccccccccccccttcgccCTAGTCCGATCATCTATCCCAATTTGAACAGACTTCATTTTTAGACCTACCAAAAAGGAAACGAAGCCGAAATTGTTTGATCTCTTTCTCAACAGTAACACCACCACCAAAACAATTGGATTTAGTCCACAATATCGGATCTGTAAATGCATCCATTCAGCCTTTGCGCACATAGGTTTCAGAAACGTTGTGAAAAGTGTTTTTGAATAGTCGGAGGTAATAGCACATAAAATGCACTAAATATGTCAAGTTGAAGTTGTGACGTTTTTGAGACGCGAGGAGTCTCTTCTGGAATGTATTACCAAACTCAGGCCTCGGACATTCAATAAAAACCCTTCTGGAAAAGCTGTGCATGTTAAGACGTGGGACGGGAAGGGAGTAGTCGTCAATGATTCATCAATGATTTTTGAATTATTGCCACTTTCACATTTAGGGTGTTTTACATATTCTAGAATCTATTGCTATTGTACGCCATATGGTAGAATACATGCATAACATTACACAATGGGAAGTGCCAATCATTTGTTTTGAGGTGTTTAGATGTATTTCTTTTGCATTTCCTAGTTTTAACACGGATAACTATTTTCCTAAGTGAAGCCATTTGTGATGGGAGTGTTGGCAAGGACCAATCGGTTTTGGTAAAAGAAATATCATTTTCCAGGCCCTGTACTGATAGACTTATCCTTTGTTTTTTTTCAAACTTACAAAACAAGAAAAACGTTTAAAAAATCTGAGCATACCCAAGAAGAAAAGCTGTCTACTCTACCTTGTGATTTCATGTCAGTACATCTTTATTGTGTTCATTTTCTTTTCCTTGGGTATGTTGTGATGAACTGCTGTAAATTTGTACAGTTCATGTAAATTGATTGTGCGAAAGTTGTACAGATTTCTATATTTTGGaagaaaagtttttttttcttctctgtaATAAAATATTTCCTATCTTGGCAACATA

Function

GO: NA

KEGG:

id description
K14443 TOB; protein Tob/BTG

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1962795 lncRNA upstream 13877 18352185 ~ 18352390 (+) True G1713203
TU1962794 lncRNA upstream 14994 18351037 ~ 18351273 (+) True G1713202
TU1962788 lncRNA upstream 27019 18339033 ~ 18339248 (+) True G1713197
TU1962787 lncRNA upstream 28211 18337794 ~ 18338056 (+) True G1713196
TU1962773 lncRNA upstream 48068 18315786 ~ 18318199 (+) True G1713183
TU1962778 lncRNA downstream 13119 18387749 ~ 18388238 (+) True G1713187
TU1962780 lncRNA downstream 14729 18389359 ~ 18389728 (+) True G1713189
TU1962816 lncRNA downstream 42282 18416912 ~ 18417385 (+) True G1713224
TU1962818 lncRNA downstream 48459 18423089 ~ 18423779 (+) True G1713226
TU1962838 lncRNA downstream 71197 18445827 ~ 18446125 (+) True G1713245
XM_036957148.1 mRNA upstream 76068 18270787 ~ 18290199 (+) False LOC110499882
XM_036957149.1 mRNA upstream 76068 18270987 ~ 18290199 (+) True LOC110499882
XM_021576934.2 mRNA upstream 97576 18247128 ~ 18268691 (+) False si:dkey-159a18.1
XM_036957147.1 mRNA upstream 97581 18247128 ~ 18268686 (+) False si:dkey-159a18.1
XM_021576935.2 mRNA upstream 98208 18247128 ~ 18268059 (+) False si:dkey-159a18.1
XM_036957150.1 mRNA downstream 137045 18511675 ~ 18516033 (+) True LOC110499888
XM_036956481.1 mRNA downstream 193238 18567868 ~ 18596759 (+) False LOC100301653
XM_036956482.1 mRNA downstream 193241 18567871 ~ 18596759 (+) False LOC100301653
NM_001160486.1 mRNA downstream 202935 18577565 ~ 18594851 (+) True LOC100301653
XM_021576949.2 mRNA downstream 239053 18613683 ~ 18617804 (+) False LOC110499892
TU1962743 other upstream 98759 18265695 ~ 18267508 (+) True si:dkey-159a18.1
TU1962172 other upstream 697681 17666280 ~ 17668586 (+) True G1712658
TU1961238 other upstream 1422478 16914220 ~ 16943789 (+) False LOC110501009
TU1961184 other upstream 1625049 16740403 ~ 16741218 (+) False LOC110499863
TU1961164 other upstream 1645797 16719955 ~ 16720470 (+) True G1711795
TU1962859 other downstream 122517 18497147 ~ 18500874 (+) True G1713262
TU1962997 other downstream 360161 18734791 ~ 18737436 (+) True G1713384
TU1963841 other downstream 1010342 19384972 ~ 19446851 (+) False G1714090
TU1963844 other downstream 1056093 19430723 ~ 19446851 (+) False G1714090
TU1963839 other downstream 1056191 19430821 ~ 19618485 (+) False G1714090

Expression Profile