RNA id: XM_021576950.2


Basic Information

Item Value
RNA id XM_021576950.2
length 2596
RNA type mRNA
GC content 0.47
exon number 3
gene id LOC110499893
representative True

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 18621177 ~ 18628411 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGAGTTGTTCCATTCAGACATCGCTGCCTGATTAGCGCTAAGTACATTAGAGATCTCAGCAGAACATTTACCTGAAGGACATAAACAGAGAGATGGTGCCAAATGCCAACTATGGGAGAACGGGGAGTGGACAGAAGGGTTAGGGTGGTTTCATAGTGAGTTATAGGCCCGTATTAGCCTGATTTTGAAGTGGGCCAAGTCTCACGGCCTCAGCTACCACACCTTCGCAGGCTTAACAGGGAAAAAATCACCACATGGATTATGACCTCTGATTACAGGCCTCTGATTGGCCGAGAGGAACTACAGTGTGACTGTCAATGAAGGGTTCCCACCAACTGAATGAAGACACCGATGGTACAAATACAGGGGAGGTGAGCGGTGTTTCTCTGAGTTTGGGACTACAGTTGCTACCACATTTCTTGAGCAAGGCAGAAACAGGGCGCAAAGACAGACTTTGGAAAATCACTTGAACTCAAAGGCTGAGTGTTAAGATGGCGCTTCTCCTGGCCTTTTCCTCCGTCCTCCTTCTGGTCGGTCCCGCTCTGGCCCAGAGCCCTGACATGTCCTACGGCGACTATATGGCCCAGTTACAGGCCTGTCCCAAAGAGTGCCGCTGCCCGCCCAGCTTCCCCAACGCCGTTTACTGCGACAACAAGGCTCTGAAGCGCATCCCCACCATCCCCCCACACACCTGGTATCTCTACCTGCAGAACAACCTCATCGACGTACTGTCAACAGATGCTCTCCGCAACGCCACGCAGCTGCGCTGGATCAACCTCAACCGCAACCGCATCACCAGCGAGGGCATGGAGGAGGGTGCCTTGGCCGCCATGCTCCGCCTGGTCCACCTCTACATGGACGACAACCTGCTGAGCTCCGTCCCAGCCAACTTGCCCTCCAGCCTGGAGCAGCTGCGCCTCTCCCGCAACCGCATCTCCAAGATCCCCGCCGGGGTGTTCTCAGGTCTGGATCGGATGACACTGCTGGAACTGCAGGGGAACAAGCTCCAGGATGACGCAGTGACCGAGGTGAGCCTCAAGGGCCTGAGCAACCTGGTCCAGATCAACCTGGCCAAGAACCAGCTTACCACCATGCCCCTGGGCCTCCCCATCACCATCACCCAGCTCTTCCTGGACAACAACGCCATTGAGAAGATCCCCGCTGACTACTTCAAGGGTCTACCCAAGGTGGCCTTCCTCAGGCTCAACCGCAACAAGCTGGGAAACGGCGGGCTGCCCAAGAACGTGTTCAACATGTCCAGCATCCTGGACCTGCAGTTGTCCCATAACCAGCTAACTCAGGTTCCTATGATCCCCTCAGGCCTGGAACACCTCCACCTGGACCACAACCAGATTAAGAGTGTGAATGGATCTGATATCTGCCCTGTGTCGGCTGATGCTCTGGAGGGCTATGTCACTGAGACCGCTCCTAAACTCCGCTACCTCCGTCTCGATGGCAATGAGGTCAAGCCACCAATACCCAGAGACCTCATGATGTGCTTCCGTCTCCTCAGGTCCATCGTCATATAAGAAACACACTTCCACCAGCCAATCGCATCTAGTTATAGTCTCCCGGATCCAAGGGCAGATGATTACTAATGAATGGAAGTGACTATGCTAATCTATATGGATTTTTGATCTGTGGACTACACATTTGCATACTTATGTTGAGAACTACATATTAGACGTCAGGGTCGGGGTCAAACCAAACTCTGTCAATTTAAGAATTAATGCAATGAATTGGTCAATAGAAAATAATGGGCCATTTTCAGTTGTTGAATTGAGTCTCCTGAATTGGTAGAATGGGAATGGAATTGACCTCAACCTTGTTGGGTGAAGGTCACCTGACAATCTGTAGATAGTGTGATTGGACTGCACTACTGTCTTTTGACCACTAGTTGTGCCTTATGTTCGTCCTGTAGTCACAAGTGCTTAATGCAACAGTGCAGTATGTCTGAGTTGCTGAATGTGCTGTTTCAATACAGCACACATTGATCTGAAAGTGGTAGAAAAccttgaaattgtgtttttccaAAAAAGACAATAATTTACTATGGCAATGTGATTGGGACAAGATAAGAGGAATAATGTTTATAACCGTATGTATTTAAGGCATGTTGAATCTTCTGATGACTCATTGTCCCCATTCTCTTTATTTGAATGGAAGATCATCTTTTGTGAATACCAAAATAATACTTTTTAAACATTGTATACTGCTCCTCTCTGACAGAATAACTTGAATTGATGATATCAGACTTGAAACCAAATGAAAtgcaaattattttattttcaagttcTCTGTGAATATGAATATGTTGAGCTAACTTTAGACACATGCTATTCCACACAAACATGCAATTGTTTGCTCTTTTAAAACATTTAGCTCATTTATTTAATTGTCTGTTTTTCACTGAATTCACTGAGTTCTTGATCACTGTCTCAAATGTGAAGTTCCATTTTGTACTCAATGGGTCAACCTATTTGCAGTCATACGTATTTCGGAAATACCAAAGCAATTTTGGAATGCTTACATTTTGTTAAGTTGTGAATTCCttatacagtcaataatataaataaaacatttttctgGAAAAACA

Function

GO:

id name namespace
GO:0030199 collagen fibril organization biological_process
GO:0007601 visual perception biological_process

KEGG:

id description
K08123 KERA; keratocan

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1962936 lncRNA upstream 11340 18612387 ~ 18612629 (+) True G1713332
TU1962925 lncRNA upstream 37302 18586072 ~ 18586667 (+) True G1713324
TU1962826 lncRNA upstream 105601 18517739 ~ 18518368 (+) True G1713233
TU1962887 lncRNA upstream 119649 18502266 ~ 18504320 (+) True G1713287
TU1962885 lncRNA upstream 131956 18491635 ~ 18492013 (+) True G1713285
TU1962960 lncRNA downstream 31944 18660355 ~ 18660684 (+) True G1713351
TU1962961 lncRNA downstream 34761 18663172 ~ 18663507 (+) True G1713352
TU1962935 lncRNA downstream 40560 18668971 ~ 18669328 (+) True G1713331
TU1962951 lncRNA downstream 43464 18671875 ~ 18672855 (+) False si:ch211-244b2.3
TU1962948 lncRNA downstream 43952 18672363 ~ 18673966 (+) False si:ch211-244b2.3
XM_021576949.2 mRNA upstream 6165 18613683 ~ 18617804 (+) False LOC110499892
XM_021576948.2 mRNA upstream 6165 18613709 ~ 18617804 (+) True LOC110499892
XM_036956481.1 mRNA upstream 27210 18567868 ~ 18596759 (+) False LOC100301653
XM_036957152.1 mRNA downstream 2232 18630643 ~ 18654262 (+) False LOC110499894
XM_036957153.1 mRNA downstream 2662 18631073 ~ 18654262 (+) True LOC110499894
XM_021576957.2 mRNA downstream 43502 18671913 ~ 18683306 (+) False si:ch211-244b2.3
NM_001124400.1 mRNA downstream 90897 18719308 ~ 18720592 (+) True fut9
XM_021576958.2 mRNA downstream 98286 18726697 ~ 18734052 (+) True LOC110499900
TU1962859 other upstream 123095 18497147 ~ 18500874 (+) True G1713262
TU1962743 other upstream 356461 18265695 ~ 18267508 (+) True si:dkey-159a18.1
TU1962172 other upstream 955383 17666280 ~ 17668586 (+) True G1712658
TU1961238 other upstream 1680180 16914220 ~ 16943789 (+) False LOC110501009
TU1961184 other upstream 1882751 16740403 ~ 16741218 (+) False LOC110499863
TU1962997 other downstream 106380 18734791 ~ 18737436 (+) True G1713384
TU1963841 other downstream 756561 19384972 ~ 19446851 (+) False G1714090
TU1963844 other downstream 802312 19430723 ~ 19446851 (+) False G1714090
TU1963839 other downstream 802410 19430821 ~ 19618485 (+) False G1714090
TU1963871 other downstream 802410 19430821 ~ 19587820 (+) False G1714090

Expression Profile