RNA id: XM_036957170.1


Basic Information

Item Value
RNA id XM_036957170.1
length 4720
RNA type mRNA
GC content 0.53
exon number 25
gene id LOC110501015
representative False

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 18863543 ~ 19171552 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tgtgtgtgtgtgtgtgtgtgtgagagagagagatacaggatgGACGTGGCTAGCTTCCTCTGTCAGTAAATTGTCAGACAGAAATACAGTATGGATGATTTCTCCAAgTATTGATGCCAACATCACAGACTGCCAGGGAAGGACAGCTCTGGAGATCCTCAGAGAACACCCCGCACAGAAGTCCCAGCAAATCACTGCACTCATGCAAGaataTATGATGGAGGAGATGATGGACAATAAGAGTGTGTTGATGGAGGAACCTATTCGCCAGGGTCCTGTCCCCACACCTCGCActtctatcccctctccctccccctccccctccctcaggCACAAaaatgATGCTGTGACAGGGGAGCTCTCCAAGCTGCTAAATGAGATGAAGATGTGTCGGGACAGAGACTACTCCTTTGAGGAGCTCTGCCAGACCATCTCATCCCACTCTCATTCCATGGAGAGCTTTGGCAGCGGTCACCTATCAGACGAGGAGCGACGCAGTAACGGCACCCTTAGCAGAGTCAGAAAGCGGCCCACTCCCCCACTTCCCCCGgcccaggaggaagaggagggggagaagagctgTGGCCCCGCTGGGTTCTGGGAGGCCCTCACACCCTGCAACGGTTGTCACAACCTGGGCTTCTCCAGCCTGTCACAGGACTCGAAGCGCTCGGCGGAGATCGTACCATCGCCCTCCCTTGACGTGTTCTTACCGGAGGATGAGGACAATCCGTATGAGTCCGTCACCACCGCCGTGACCCGCAAGCCCTGCTCGCTGGACATCGGCCTCTTCAACGCCTGCCCCCTCAACGGCCACTCTCCCCAGGTGACGGTGACTGAGCCGGAGCTGTGTAACCATAGGAACAGCTCCTCACCGACGGGGCCTACTCCAGACTGCTCTCCCCCCTCCCCAGACACTGCCCTGAAGAGCATTGACAGAGTCATCCGCCCACAGcccAAACAGCggacctccctctcctcctccctggatGTCCAGAACCAGAGGCCAGTCAACCACAGCTGTGATCCCTCCGAGGTGAGCTCGTCCCTGGGCTACGCCAGCTTCAGCACCAGCCCCCCTGCCAGCCCGCCAGTCAGCCCCAACCAGGACTCACCTGGCTCCAACGACGACTGCCCCCCCACAGACGACGGGCCGTACCAGCAGAACCCTCCCCTCGCCTCTTCCAATACACTCCTACTACCAGAAGACCGACGACAGAGCCTCGTCCCTGTAGAGTTCGCCGGCCTCCTCCACGGCTCCTCGCCGGCCTGCGAGACGCCCGACAcaccctaccacctctacacctcCAACACCAATCCCAAAGCCCGAAAACACACCCCCTCGGACCCCCACACCAGCCCGGTAACCACGGTCGGTAACCAGGGCAACCTCACTTCTGAAACCCAGCCCTTTGAATTAGGAATTGGACTTCCACCGCCCCTCATTATCCCTCACACAGGAAACGAGGCGTTGGCTCTGAAGACCCCCAAAGATCCCCTCAAAGACGACAGACCCCCCAAACCTCAGGTAGTCTATCGCACCATTTTCCACACCCGGGTTAACCAGAACCCCCAGAGGGcctcgccctcctcctcctcgccgTATGGTTGGAACGGGGAGGCGGTGGTGGTGAGGGGGTGTGTGTCGGGAGCTGGTGGACCCAGGGAGGGGACACCGGCGTCTGGATACGAGGACAGGGCCTTTACCCTGGGCAGGATGAAATCCATACCTCGCAGTGTGCTGGACCTAAAGCTCTCCAAGTCACTGTCCAAGTCTGACTCCAACCTGGTGGCTGTGTCACCCATACAGGAGGAGTACCACTGGGGGTCGGGGGCCAGGGGCCAGGGGCCGAGAGGAAGCCCAGGGGACACCGAAAGTCCTGGGGGCCAGCTTGAGAGAACACCCTCCTTCACTGCTGaatgggaggagaTTGATAAGATAATGAGCTCCATTGGGGCTGGCATCAGCACTGGCACGGGCTCAGAAGGGATCAAGGAGAATAATGCAGGTCCCCGGTGCCCCATGCAGTCTGTGGGCCAATGGCTGGACAGCATTGGACTGGTCCAATACGAGAACCACCTACTGGCTAACGGCTTCGACAACGTGCAGTTTATGGGCAGTAACGTGGTGGAGGACCAGGACCTGCTGGAGATCGGGATCCTCAACTCAGCCCACAGACAGAGGCTGCTACAGGCCATACGCCTACTGCCCAGGgTGCGTCCTATTGGCTATGACGGTAACAACCCCACGTCAGTGGCTGAGTGGCTGGAGTCTCTGGAGCTGGGAGACTACACTAAGTCCTTCCTCATCAACGGATACACCTCCATGGAACTGGTCAAGAAGATCTGGGAGTTAGAACTCATCAATgtGTTGAAGGTCAGTCTGATAGGACACAGGAAGAGAATTCTGGCCTCGCTGGGAGACAGGCTTCACCAAGACCCTCCACAGAAACCTCCACGGGCCATCTCCCTacggGAGCCCGGTGGCTGCAACACCCCTCCCCAGATCCTTCCGGGCCAGGCTGCGTACACCACGACGGGTGTCCCAGGGGGCTCGTTGGACGTGCAGCACCTCATCATGCAGGCGGACGCACGGCGCCGCCAGCGCTCCAACGACAACTACTTAGAGGAGATGCCTCGCTCCAAACTGGAGCGGCAGATGGCCCAAGTCAGCATGTCTCATGATGTTGGAGAAAGACCTTCTGCAAGAAATGATACTCAAGGCGAATGGTGCGAGCCAATCACGTTGCGTCCTCCCAACGAGGCCACCTCgtccactccagtgcagtactgGCAGCACCACCCTGAGAAACTCATCTTCCAGTCGTGTGACTATGAAGCTTACTACCTGGGCTCCATGCTGGTGAAAGAGCTGAGAGGAACAGAGTCAACACAAGACGCCTGCTCCAAGATGAGGAAGTCTACAGAACAGATGAAGAAAGTCCCGACCATTGTTCTGTCCGTCTCCTACAAGGGAGTCAAGTTCATCGACGCTACAAACAAGaacaTCATAGCTGAGCATGAGATCCGTAACATCTCATGTGCGGCCCAGGATCCTGAGGATCTGTCCACGTTTGCCTACATCACCAAAGACCTCAAGTCCAGCCACCACTACTGCCATGTCTTCACTGCCTTCGacgtgAACCTGGCGTATGAGATCATCCTGACCCTGGGCCAGGCCTTTGAAGTAGCCTACCAGCTGGCCCTGCAGGCCAGGAAGAGTGGGCATGGCTCCTCCACGCTGCCAGAGAGCTTCGACATCAAGCCCAACAAGCCCGTCCCCAAGCCCCGCGTCAACATCCGCAAGTCTatgGAGCAGCCGTCGATGGAGCAGAAGGGTCATGCCAACGTGCCGTGGATAGTGGAACCAGGGCAGGAGGCCAAGAGAGGAGCGAACACCAAGGCAATGCCGGACGCCCATGTCTATTACTGTGGAATGCAAAGAATGTAGCCAGCCTTAAACATGGACCCTCACACACAATGCAAAAAGGACTACAAATGTGGACCCTTCTGTCTGTGTCAAAGGACTACTAACATGGACACTCTCTAACGAACTTGGTGTTTAAGGTTGATTACAAAACGAGGACATCTTCCCACAAACATTGGACTCATGGCCtaactgtgtacacacacacacacagttaagggACTGCTTAGTAACAGTCAGATATGTGAATGTAGACTTTCATTGAAGCAGCCACAACTACAACTCTAGCCCCTGTTCTGCATTCAATTGGACCTTGACCTTTAAACTCTATACCACGGTCACCCAAGGTCTGGACTGTAACGGACAACTGTGTGTATTTGAATGGGGACGAGGTAAAGGACTTCTGATTGGCTCTTTTCCTCTTGTTTAAGTTTTGTTTCACGGTCAATACTACAATTACATGGATAGAATTGGCCGTGCCGGACCACCATGCAACAGGTGAGCCGTGTGCCGGACCACCATGCAACAGGTGAGCTCTGTGCCAAGTGGCATCACAAAGGATGGCTCCGCCTACCTGAGCAAAACACCATCCATCCCAATTAAAGAAATATTCATATTAATGCCGGATGTtttaaatgtttcatatgagagtATTATCTTACCTTATGATTATTCTTGTGCAATTCTTGTCTTAATGTTACATTATTTTTATATGATATGCTGAAATGAAAAAAATCCAGGCTTGAGAATGATTgccattctttaaaaaaaatagcatAATAGTTCTATACTGAGAGTGAATGTTTCAGATGGCTCCTCTCcttataattaataataatagctattattattattggtgtgtCCGGTCAACACACCAATCTGTTTCTCATGGGGCTAGACTCATAACTCCAAGCAGATGTAATATTTTACCACAGTATTTCTGTATTCTTTGGATGAATACATAGTCCTCTCTAAATGTACATAGATATTTTGCCAGCTCATTGTTCATACATGTAATGTagtaaaacatttacaaaaataaaGGAATCAAATATTTGCCGCACATCGCACTGGAGACAAGGTACCAAAATGGAAAGGTCAGAGTTGAAAATAAAGTCTATGGTTCTAGAGATTGTATTGGGGAGGGCTGGGACAGGGTGATGACATCACTGCTGACTAACTCATGTACGTATGCTTGGGCTTCCAGCACACAGATTTTGTACGTTTTGGTCATTATTTATATCCTTGTAAATCACATGGAATAAACACAACTTGTACAACCATTAATCACCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1963505 lncRNA downstream 370 18862852 ~ 18863173 (-) True G1713819
TU1963501 lncRNA downstream 4149 18859098 ~ 18859394 (-) True G1713815
TU1963491 lncRNA downstream 12558 18846269 ~ 18850985 (-) True G1713806
TU1963478 lncRNA downstream 23428 18838288 ~ 18840115 (-) True G1713801
TU1963467 lncRNA downstream 38353 18824446 ~ 18825190 (-) False G1713793
TU1964196 lncRNA upstream 5347 19071138 ~ 19130658 (-) True G1714349
TU1964274 lncRNA upstream 94440 19160231 ~ 19160808 (-) False G1714411
TU1964276 lncRNA upstream 94440 19160231 ~ 19160808 (-) True G1714411
TU1964247 lncRNA upstream 108306 19174097 ~ 19176153 (-) False LOC110501016
TU1964248 lncRNA upstream 108306 19174097 ~ 19175077 (-) False LOC110501016
LOC110500916 mRNA downstream 155886 18701914 ~ 18707657 (-) True LOC110500916
XM_021576955.2 mRNA downstream 161768 18683391 ~ 18701775 (-) False LOC110499898
XM_021576956.2 mRNA downstream 161768 18683391 ~ 18701775 (-) False LOC110499898
XM_021576953.2 mRNA downstream 205851 18654035 ~ 18657692 (-) True LOC110499895
XM_036957139.1 mRNA downstream 631354 18203539 ~ 18232189 (-) False LOC110499883
XM_036957173.1 mRNA upstream 108302 19174093 ~ 19221339 (-) False LOC110501016
XM_036957172.1 mRNA upstream 108302 19174093 ~ 19221341 (-) False LOC110501016
XM_036957171.1 mRNA upstream 108302 19174093 ~ 19221342 (-) False LOC110501016
XR_005038544.1 mRNA upstream 114972 19180763 ~ 19221344 (-) False LOC110501016
XM_021576967.2 mRNA upstream 162207 19227998 ~ 19234102 (-) True LOC110499908
TU1963419 other downstream 97739 18765460 ~ 18765804 (-) True G1713755
TU1963377 other downstream 194218 18668834 ~ 18669325 (-) True G1713719
TU1963290 other downstream 258026 18594604 ~ 18605517 (-) True G1713637
TU1963247 other downstream 392726 18470513 ~ 18470817 (-) True G1713604
TU1961918 other downstream 1567808 17295519 ~ 17295735 (-) True G1712424
TU1964391 other upstream 385409 19451200 ~ 19453678 (-) True G1714475
TU1964373 other upstream 538380 19604171 ~ 19606680 (-) False G1714470
TU1964375 other upstream 538380 19604171 ~ 19617954 (-) True G1714470
TU1964728 other upstream 836994 19902785 ~ 19903457 (-) True G1714755
TU1965105 other upstream 928880 19994671 ~ 19995602 (-) True G1715085

Expression Profile