RNA id: TU1964059


Basic Information

Item Value
RNA id TU1964059
length 970
lncRNA type sense_over
GC content 0.61
exon number 5
gene id LOC110501015
representative True

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 18863543 ~ 19171552 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GAGCTCATTGCGTGAACCTACTCAACCTTCTCACCCCTTACACCAGGAAGTGGAGGTGGGATCAACTATTAACAGGACTCGAAGCGCTCGGCGGAGATCGTACCATCGCCCTCCCTTGACGTGTTCTTACCGGAGGATGAGGACAATCCGTATGAGTCCGTCACCACCGCCGTGACCCGCAAGCCCTGCTCGCTGGACATCGGCCTCTTCAACGCCTGCCCCCTCAACGGCCACTCTCCCCAGGTGACGGTGACTGAGCCGGAGCTGTGTAACCATAGGAACAGCTCCTCACCGACGGGGCCTACTCCAGACTGCTCTCCCCCCTCCCCAGACACTGCCCTGAAGAGCATTGACAGAGTCATCCGCCCACAGcccAAACAGCggacctccctctcctcctccctggatGTCCAGAACCAGAGGCCAGTCAACCACAGCTGTGATCCCTCCGAGGTGAGCTCGTCCCTGGGCTACGCCAGCTTCAGCACCAGCCCCCCTGCCAGCCCGCCAGTCAGCCCCAACCAGGACTCACCTGGCTCCAACGACGACTGCCCCCCCACAGACGACGGGCCGTACCAGCAGAACCCTCCCCTCGCCTCTTCCAATACACTCCTACTACCAGAAGACCGACGACAGAGCCTCGTCCCTGTAGAGTTCGCCGGCCTCCTCCACGGCTCCTCGCCGGCCTGCGAGACGCCCGACAcaccctaccacctctacacctcCAACACCAATCCCAAAGCCCGAAAACACACCCCCTCGGACCCCCACACCAGCCCGGTAACCACGGTCGGTAACCAGGGCAACCTCACTTCTGAAACCCAGCCCTTTGAATTAGGAATTGGACTTCCACCGCCCCTCATTATCCCTCACACAGGAAACGAGGCGTTGGCTCTGAAGACCCCCAAAGATCCCCTCAAAGACGACAGACCCCCCAAACCTCAGGTAGTCTATCGCACCATTTTCCACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1964088 lncRNA downstream 46334 18914003 ~ 18915793 (-) True G1714253
TU1964070 lncRNA downstream 79332 18882151 ~ 18882795 (-) True G1714237
TU1964065 lncRNA downstream 95119 18866741 ~ 18867008 (-) True G1714233
TU1963505 lncRNA downstream 98954 18862852 ~ 18863173 (-) True G1713819
TU1963501 lncRNA downstream 102733 18859098 ~ 18859394 (-) True G1713815
TU1964165 lncRNA upstream 1831 19029317 ~ 19029575 (-) True G1714328
TU1964167 lncRNA upstream 4831 19032317 ~ 19032521 (-) True G1714330
TU1964170 lncRNA upstream 10380 19037866 ~ 19038156 (-) True G1714333
TU1964196 lncRNA upstream 43652 19071138 ~ 19130658 (-) True G1714349
TU1964274 lncRNA upstream 132745 19160231 ~ 19160808 (-) False G1714411
LOC110500916 mRNA downstream 254470 18701914 ~ 18707657 (-) True LOC110500916
XM_021576955.2 mRNA downstream 260352 18683391 ~ 18701775 (-) False LOC110499898
XM_021576956.2 mRNA downstream 260352 18683391 ~ 18701775 (-) False LOC110499898
XM_021576953.2 mRNA downstream 304435 18654035 ~ 18657692 (-) True LOC110499895
XM_036957139.1 mRNA downstream 729938 18203539 ~ 18232189 (-) False LOC110499883
XM_036957173.1 mRNA upstream 146607 19174093 ~ 19221339 (-) False LOC110501016
XM_036957172.1 mRNA upstream 146607 19174093 ~ 19221341 (-) False LOC110501016
XM_036957171.1 mRNA upstream 146607 19174093 ~ 19221342 (-) False LOC110501016
XR_005038544.1 mRNA upstream 153277 19180763 ~ 19221344 (-) False LOC110501016
XM_021576967.2 mRNA upstream 200512 19227998 ~ 19234102 (-) True LOC110499908
TU1963419 other downstream 196323 18765460 ~ 18765804 (-) True G1713755
TU1963377 other downstream 292802 18668834 ~ 18669325 (-) True G1713719
TU1963290 other downstream 356610 18594604 ~ 18605517 (-) True G1713637
TU1963247 other downstream 491310 18470513 ~ 18470817 (-) True G1713604
TU1961918 other downstream 1666392 17295519 ~ 17295735 (-) True G1712424
TU1964391 other upstream 423714 19451200 ~ 19453678 (-) True G1714475
TU1964373 other upstream 576685 19604171 ~ 19606680 (-) False G1714470
TU1964375 other upstream 576685 19604171 ~ 19617954 (-) True G1714470
TU1964728 other upstream 875299 19902785 ~ 19903457 (-) True G1714755
TU1965105 other upstream 967185 19994671 ~ 19995602 (-) True G1715085

Expression Profile