RNA id: XR_002470045.2


Basic Information

Item Value
RNA id XR_002470045.2
length 3312
RNA type mRNA
GC content 0.43
exon number 7
gene id LOC110499934
representative False

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 19755909 ~ 19761293 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ctacatctagtggagagagattgtaagacataAATAGTAGCTTTACGTctagatgtaacggagggtccgttttttcatcttttctccaatactatagagccattaccatgtcgatcaacgcttgaatagaaacctagttcacacccccgattttaaAGTCGCTACATACATTCCCATTCGTTTTCTTTGTAGCTtcgtttgaatgtcgcggttgTGCACATTtatacggaatggggtgagtttacgttacctAGTTGCCAGCCAGCTAGCTACTGCTATCATGACTAGTTATGTGTGTAATACCATAGACTTATAGGCCGGTAATTATCGGTATTATCAAAGAAGATTATCTAATAGTTCGACTGAAGAAACCACTATTCTTGGCACTGGGTTCGCGGTTCAAATGAGTGCAATATCAACGCCAGCATCATCAGTACCAACATACATCAATTTCAGCAGACAGAGTTGAGAGTCCTGATGACAACCTGGATCAGACTCCCTTGTTTTCAGACCAGACAGGTCCACTGTTCCCTTTATCATCTTTCCGTCTCCTGGTTCCACCTCTACGACTGATGTCAGCTTTCATGTGGCAAGTGGCTCAAGAGCGTAATGTGATGCAGTATGGGAAGCTGGAGGAGTTTGTGACTTTGGTGACAGAGATGATTCCAGAGCTGCTGAGCTCCAGGCAGAGGACCCAACTCATCCTGGGACTGAGAGCAAGAGTGAGAAGTGGGAGGGTGGAGAAGGAATGGAGGCATGGGTGTTCAGAAATGATCTTAGTCCAATAACTATTATTCTCATAAAATCTACTTTCAGATGGTTTTAGAGTTGTTTCGTAATGAAAACCCACCGGACCCCCAGACCATCCAACTTCCAACTTCCAACATCCAATGTCTTCAGTACATGCTGTGCATGAGGATGTATGTAACTTTCGGTGTCTAAAGTAGTCTGGATGCTGTATCATTCATTTTACATGCCCAGTCACAGAGTAGAAATTAGTTGGAGTCTTCAGAGTCTAACTTCGTGGAGCCGGTCAAAACCCTGCTCAAAGACCCTTCTCAGAAGAAGCACTTCTTCCAGGTGGGGTTCCCAATATGTTACACCCTCGGTATGACACAGCACTGCAGATACTGGTGTTGGGAGTTTCTCTCCTGATTGGAGGAGCTGCTGCCTGTACCAGACCTCAGAGACAGCATCTTGTCTCAGCCTTGCCCCCTCTGACCTGGAGGAGTTCTGGCATTCTGTCTCTGACCCCGAGCACCTGAAGACACTGCTGCAGCATCATAGACATCTGGGTCACTTGAGCAAAAAGTCGCAGACAACATCTTGTCCACATTGTCAATTCCTCAAATTCATGGCCTGAAGTCAAGTCTCGATGGACATGAAGGCATGAAAGGGAGCACAGAGGGGTGGAAGATCAACagtgaggaaggaggagagttGCATTTTGAAAAGAACTTGTAGGATGATGGAAGTGAAAGAAATGAAGACCCTGAGAGAGGATTGAAGGATGAGGATGATGCAAACTGGACTTCCCATCTGAGTGAACCAGAGGACTTGGATGAACTGGCTAGTGGCATGCCCTCCGAGGTCTTCTCCTGCCCCCAGTGGTGAACCTTGGTGAACCTTCAGCAGCACATCAGGAAGGAACATCTAACAGAGGACAGCAGGAGCCTGAGAACTCACTGCCATCCAGTCAAACTGCCAAGAGCTCCTCAGCCAAGAGCTCCTCAGCCAAGAGAATGAATAAGAACACCTGAACATCTGACCTGAAACGACACCAAAGTGTTCACACCAGGGTGCACCCGTTCTGTTGCAACCAGTGTGAGAAGAGATTCAAATCGGAGAGATATCTACAACTGCACAAGAAAAGTCACGAAGTAGAACCGATGCACAGGCCTATTTGCCAGCACTGTGGTAAGAGTTACACTAGTGCAGCTGTCCTCAAAATACACATACGCACCCACACCGGAGAGCGGCCTTACTCCTGCTCAGTCTGTGGGAAGAAGTTTAATCAAAAGCACACATTAGTTAGACACCTCCGGATGCACAAAGGAGAGAGACCATACCTGTGTAGCGTATGCGGGAAGGCTTTCTTTGTTTCCGGGGAACTCTTAGTGCACATGCGTTTTCACACAGGGGAACGACCTTACCGCTGTAAACCGTGTGGAAAGGCTTTCAGCAGGTCATGCGCTCTCACGTCGCATAAGCGATGGCACTCAAATGAGCGCCCGTTCACCTGCTCCCTGTGTTCAAAGGGCTTTGCGGAAACTGGTGGCCTTAAAAGACACATGTTTATTCATACCGAGGAGAAGCACCATTGCTGCCACGTGTGGGAAAGGATTTAGTCAGTTGAGCAACATGAGAATACATTTGAAAactcataaaaaaatgtaattggatCTTTGTAAGACTAATGGAATTTGTACGCTATTGTAGTGTTTCTCCTTGAGCTCAAAGCCAAAAGCAAGAAAAATATGAAATTGCATTATAGGTAGTGTACATCGCCCTGAGAAGGTTTTCACACTGACTAAGTAGCCATTCTGTTATTTTCCCCTTGGAAAGGTGATCGGTTGTTCAGGAACTTTGGGCACAGACTTCACAATGACACTGAggttcagacctgggttcaaatactatttcaaatacCTCAACTTTCCCCTACATTGTCCAAGTAAGTATTcagatatattttatttcagaagacaagtagttgaatattttaatgtatttgaaaatactaaaatacactgactcaaatacactcccatgcattttacccaggtatttgaaaatagtatttaaaataagtgtttaaAAATACTCttactgtttttttttacaaatagccATTCAAATAGAAGTacttgttttgtttttgaaaatgCTCAAATACactgaaaaatgtatttgaaataccAGATATTGAAATgcatatttgaacccaggtctgattgtAATAAAAATCACTCATTAATTGTCTGTGGTGACTCTAATTAGTAAATTAACTAATACTACAGCATGTGTATGTATATTATGTACATGATGCTACATTTATTATCTGTCATACACTTAATAAAAACTTTATGTGTAGGAAAGGATTTACTCGGATGAGCAACATGAGAATATGTTTGAAAACTCGTAAGACATAAACTCATTTGTCAGACTGAAGTGATTTTCTTTTACACTCGTGTTAGGTGTTTGTATTTCTCCTTGAGCTCATTGTATTATAGGTAAtgtacaatgaacaaaaatataaatgcaacaagtgttggtttcatgagctgaaataaaagatcccagaaatcttCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1963831 lncRNA upstream 1300 19657869 ~ 19754609 (+) False G1714090
TU1964031 lncRNA upstream 20040 19712705 ~ 19735869 (+) True G1714210
TU1963862 lncRNA upstream 22792 19720050 ~ 19733117 (+) True G1714090
TU1964002 lncRNA upstream 28148 19631947 ~ 19727761 (+) True G1714184
TU1963885 lncRNA upstream 32352 19604170 ~ 19723557 (+) False G1714090
TU1964555 lncRNA downstream 23089 19784382 ~ 19784728 (+) True G1714612
TU1964556 lncRNA downstream 25386 19786679 ~ 19787340 (+) True G1714613
TU1964562 lncRNA downstream 31595 19792888 ~ 19793165 (+) True G1714619
TU1964563 lncRNA downstream 31964 19793257 ~ 19793527 (+) True G1714620
TU1964615 lncRNA downstream 88074 19849367 ~ 19850971 (+) False G1714654
XM_021576977.2 mRNA upstream 3605 19742124 ~ 19752304 (+) False LOC110499917
XM_021576979.2 mRNA upstream 3605 19742125 ~ 19752304 (+) True LOC110499917
XR_005038547.1 mRNA upstream 46147 19709214 ~ 19709762 (+) True LOC118942906
XM_036958467.1 mRNA upstream 324410 19425393 ~ 19431499 (+) True LOC110499932
XR_005038546.1 mRNA upstream 367837 19384992 ~ 19388072 (+) True LOC118942905
XM_021576981.2 mRNA downstream 2369 19763662 ~ 19784185 (+) True LOC110499918
XM_021576986.2 mRNA downstream 36186 19797479 ~ 19806872 (+) False LOC110499935
XM_021576984.2 mRNA downstream 36436 19797729 ~ 19806872 (+) False LOC110499935
XM_021576985.2 mRNA downstream 36754 19798047 ~ 19806872 (+) True LOC110499935
XM_021576987.2 mRNA downstream 49258 19810551 ~ 19818578 (+) False LOC110499937
TU1963853 other upstream 131995 19602461 ~ 19623914 (+) False G1714090
TU1963818 other upstream 131995 19617394 ~ 19623914 (+) False G1714090
TU1963834 other upstream 168089 19580122 ~ 19587820 (+) False G1714090
TU1963826 other upstream 227778 19486614 ~ 19528131 (+) False G1714090
TU1964921 other downstream 347905 20109198 ~ 20113891 (+) True nmes1
TU1965448 other downstream 797129 20558422 ~ 20558751 (+) True G1715392
TU1965907 other downstream 1237305 20998598 ~ 21000137 (+) False LOC110499980
TU1967360 other downstream 2414670 22175963 ~ 22180897 (+) True G1717161
TU1967725 other downstream 2957626 22718919 ~ 22721074 (+) False G1717516

Expression Profile