RNA id: XM_021576988.2


Basic Information

Item Value
RNA id XM_021576988.2
length 3333
RNA type mRNA
GC content 0.44
exon number 9
gene id LOC110499937
representative True

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 19810551 ~ 19818578 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TAACTTGCAAGATTAGAAAACAATATTGtgtgtttgctagctagctttctAACCTAGGTGGGCCAGGTCGCTAGCTAGCTATGACCAGGGTCGTATAAGAACAAACCGTAGctaaacgttttgcaacggaacATGTAAACGAGCGTTTCTAATTGGACAAATTCGGGTCGTCGCTCCACGTTTCGGTCAGTTTTCTAGCACTTGGTGTCTAGCGAAAACGACTCGGACGTCAAGGAAGTAGCTGGATATCTAGCTAGCTATTGTGCCGTTTCTAGCCAAACCTCTTGtatatctaacgttagctagctgtgcCTTTCGATATTTTTATGAAGCAATAAGACTGAaaggttgtggtatatggccaatatactacggctaagggctgtttcacacgacgcaacgcggagtgcctggatacagcccttagtcattgtatattggcaatataccacaaaacccctgaggtgtcttattgcAATTATAAGCTGGTTTCCAAGattcccccatccctctctcctccctgcgcCTTTTGGTCCCACCTCTACGACTGATGTCTGCATTTATGTGGCAGGTATCACAACAGAGGGCCATTAAGCACTATGGAAAATTAGAGGAGTTTGTGACCGTGGTAACACAAACTGTCCCAGAACTtatgactgacagacagaggacCCTCCTTATTTTGGGGCTGAGAGCAAGGGTAACTTTGGGGCGATTTTCTGCTGAACACCCTGTCAGCCTCCAAACCCTCCTTTATTCTATAAAGTCTTCTCAACTTGCACAGGTTCAGTCCTATGATGCAGGCATGGAATCACCTGAAGCTAACTTTGCCAAGCTCACCCAAAGCTTGATTACAGACCCAGTTGAGCGTGAACACTTCGTTCAAGTGGTGTTCCTTGAGGAATTCAGACCTGATTTTGACAAAGCGCTTCAGGAACTGGTCTGTGACTTCCTCACTAGGTTGGAAGAGCTGCTTACACTACCAGACTTTAAGCAGACTGCATTGTTGCTGAGTGCCGGCTCCTCTGGCCTGGATGAATGCCTGCAGTCTTTCTCTCACTCAGAAGATCTCCAGTTTCTGCTCCAGAATTACAAACAATGCAGAACATTGTACACAAACATTTCTTCCTCTGACATTCCTCAGGAATCAGATATTGAATCCGATGCCTTCCCTGACCAGTTAAACCGTACCAATCTGGACACTGGTGTGGCTATGAGGACAGCACATTTAGTGGCAATGGGGAGCACAAGAGATATTATAGGCTGCGATGAAACCTGTGATGAAGCGAATGAAGATGACATAGATGTAGAGGACGAGTCAGCACAgaaaagGGCTGGTTCTGGTCTTTCTCCTACCGGTGTCATGCAAGGTGGTGATACAGACCCAGTTGCAGGGGTGTCGTTTCAGGTGTTGACTCCCCTTTCTTCAGCTTCAAATGAGTGTGCCCCATCTACTTCCAGTTCATCACACATTAACATTTTCCACCAGTGTCCTCAGTGTGGGAAGTGCTTTAATTATCAGTCTCAACTTGTCCAACACCAGCAAATTCACTGTGGGGATAATCCATACAAGTGCTCCAACTGTGGGAATAGATTCAAATTCTTTACAAGTCTGTCAAACCATAAGAGGATGCAATGTGTGGGCACTGCCTTTAGCTGTTCCAAGTGCTGGAGAGAGTTTGGTTCTCTGCGTGAGAAATTGAGACACCAGTGTCCACACAACGAAGCCATGTCCATCTGTCCACAGAGCGGGAAGAGTTTTAAGACATCACCACAATATCCATTCCAGTGTCGTCACTGTGCAAGAAGCTTTCCCGAATCGAATCAACTGGACACCCACGAAAAAAGTCACAGTGTCGTCCAAACGCTTGACTGTCACAAATGTGGAATTACCTTCAGCAACTTGCCCAGTCTAGTGCACCACGTGGAAGCCCACAAGAGGTCGGATCTGAGGCCATCGTCGCACCTTCCAAAGAAGAAAGGATTGCAGCTTCCGAGAACTCACCATTGCCACCAATGTGGAAAGTCCTTCGTAACAAACCGTCGCCTCAAGGATCACATGCGCACTCATATGAATTATCGTCCCTTTTCCTGCTCCTACTGTGGGAAATGTTTCACTCAGAAAGGTAATCTCACTGTGCACATAAGGCTCCACACAGGGGAGAGACCCTACATGTGCTCTGTGTGTGGGAAGGCGTTTCCATCAGGAGGGGATCTGCAGGTACACCAGCGCTTTCACACTGGGGAGAGACCTTACCAATGCAAAGAGTGTGACAAGCGTTTTTTTAAGTCGAGCCATTTAGTGGTCCACATGCGTGGGCATAGGGGAGAGCGTCCCTACACTTGTAATGAATGTGGGAGGGGTTTTATCCGGAGAACTTGCTTAAAAAAACATTTGCTAGTTCATTCAGGGGAGAGGCCATATTCATGTCTTCGTTGCCCGAATACTTACAAACGCAGTTCACACCTGAACTATCACATGAAGAAAAATCATTGAAAAATGTAGTGTATTtacattgttgttttttttgtagaGCTTTTGTAATAGTGGCATTAGTGGAGATGCAGGAAGTACACCCAGTACCAAACTAATTTATCATATCCTCAACACTTTAAAGCCTTGTTTCCCAGTTGAAGGGGAAGTTCAGTCATTTACAGCTTGACGATTCCTCATCCTTTaagtagtctatgggccaggagACACTAATCTGTGCTTCAGGTTTCTTTAAACGGACACTACAAACTAACGTGAGCCTCCACTAGCTGATAATCAATGGAAGTGATATGGGGCATccatgaaatgtaaaaaaaaaaaaaaaaacattaccttTTGCTAATGTAAAACCAAATATTGGATTTATCTCAGTTGATTTGGCTATTACATTGAGAACAATTGCATAATTGACCCTATCACTCCCTTTGATTTATAGTTATAGGTGTTTAAAATTAGCTTAAGTTTGTAGTGGCTGCTTAAAGAAAACTGAACCATAGATTACAGGTTTtcctggcccatagactactttcaaGGTGATGAACCATCTAACAATAAGTTGTTAAATAGTAAACTTGCCCTTTTTAAAAATCACTCTGCATAATAGTTGAGGATGCAAATATGTACATAAGCCACTGGTTGAGGCTGTTCCATCTGTTTGTTTACGTAATGTTATATGGAGTTTTGGTGAAACTGTTTAAATGTTCAGCACCTGGATTTATTTCCATGGTGATATAGTGATTTAGTGTTCTGTTGAATGCAGTATAATCGCCAGAATCTACTCTTCTGTAATTTAGTTATGCATTAATATATCAATAAACATATCCATCTAAAAATGCCAA

Function

GO:

id name namespace
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1964563 lncRNA upstream 17203 19793257 ~ 19793527 (+) True G1714620
TU1964562 lncRNA upstream 17565 19792888 ~ 19793165 (+) True G1714619
TU1964556 lncRNA upstream 23390 19786679 ~ 19787340 (+) True G1714613
TU1964555 lncRNA upstream 26002 19784382 ~ 19784728 (+) True G1714612
TU1964541 lncRNA upstream 49828 19760497 ~ 19760902 (+) True LOC110499934
TU1964615 lncRNA downstream 30789 19849367 ~ 19850971 (+) False G1714654
TU1964613 lncRNA downstream 31036 19849614 ~ 19851600 (+) True G1714654
TU1964635 lncRNA downstream 68486 19887064 ~ 19887326 (+) True G1714674
TU1964636 lncRNA downstream 70744 19889322 ~ 19889531 (+) True G1714675
TU1964627 lncRNA downstream 84476 19903054 ~ 19903389 (+) True G1714666
XM_021576986.2 mRNA upstream 3858 19797479 ~ 19806872 (+) False LOC110499935
XM_021576984.2 mRNA upstream 3858 19797729 ~ 19806872 (+) False LOC110499935
XM_021576985.2 mRNA upstream 3858 19798047 ~ 19806872 (+) True LOC110499935
XM_021576981.2 mRNA upstream 26545 19763662 ~ 19784185 (+) True LOC110499918
XR_005038551.1 mRNA upstream 49437 19755909 ~ 19761293 (+) False LOC110499934
XM_021576996.2 mRNA downstream 42576 19861154 ~ 19885723 (+) False LOC110499940
XM_021576997.2 mRNA downstream 52037 19870615 ~ 19885723 (+) True LOC110499940
XM_036957201.1 mRNA downstream 73899 19892477 ~ 19900807 (+) False LOC110499945
XM_021577003.2 mRNA downstream 73967 19892545 ~ 19900807 (+) True LOC110499945
XM_021577009.2 mRNA downstream 85007 19903585 ~ 19907504 (+) True LOC110499950
TU1963853 other upstream 186816 19602461 ~ 19623914 (+) False G1714090
TU1963818 other upstream 186816 19617394 ~ 19623914 (+) False G1714090
TU1963834 other upstream 222910 19580122 ~ 19587820 (+) False G1714090
TU1963826 other upstream 282599 19486614 ~ 19528131 (+) False G1714090
TU1964921 other downstream 290620 20109198 ~ 20113891 (+) True nmes1
TU1965448 other downstream 739844 20558422 ~ 20558751 (+) True G1715392
TU1965907 other downstream 1180020 20998598 ~ 21000137 (+) False LOC110499980
TU1967360 other downstream 2357385 22175963 ~ 22180897 (+) True G1717161
TU1967725 other downstream 2900341 22718919 ~ 22721074 (+) False G1717516

Expression Profile