RNA id: XM_036957200.1


Basic Information

Item Value
RNA id XM_036957200.1
length 2301
RNA type mRNA
GC content 0.55
exon number 16
gene id LOC110501023
representative False

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 19843806 ~ 19858976 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GAGTGTGACGTGCTGACCAAGAGCCGTGGCCAGGGCATGATCCCGCTGGCCCCAGTGTCCAAGTCCCTGTGGACCTGTGCTGTGGAGTGCTCCATGGAGTACTGCCGCATCCTCTACGACGTTTACCCCCTCAAGAAACTGTGGTTATGTTTCAGATCAACTACATTGTGAGTGATTCAGAGTTCCACATTCTGAACAGCTGGAGGCAAGAGGACCAAAGCACTCATGAGCTCATGTCTGCTCTGGCAGCTGTGGGTCCACCTAACCCGCAGGAGGACCCTGAGTGTTGCAGCGTCCTGCACGGCCTGGTGGCAGCGGTGGAGTCACTGTGTAAGATCACTGAGTACCAGCACGAGGCACGCACCACCCTCATGGACACTGCTGACAGGGTGGCCAACAGGGGGCGCATTATCTGCCTTACAAACGCCAAGAGTGACACCCATGTGCGAATGCTGGAGGATTGTGTGCAAGAGACCATTCTAGAGCAAAACAAGATGGCAGCAGGCTCAGACAGACTGATGTCTATCCAGCAGTGTGAGCTGGTGCTCGTCCACATCTTCCCTCAAGGAGAGGACACACTGGTCTCAGACCGGCCAAAGAAAGAGGTCTCCTCTCTGCTGACCAGCGAGGTTCACAGTGTGCGGGCAGGGAGGCACCTGGCCACCAAACTCAACATTCTAGTGCAGCAGCACTTTGACCTTgcctccaccaccatcaccaacatcCCAATGAAGGAGGAGCAGCACGCCAACACGTCGGCCAATTACGACGTAGAGCTCCTGCATCACAGGGACGCCCATCTTGAGTTCTTCAAAAGTGGCGACCTTCACATGGCTGGTAGTACGAGTCGAGACAGTGGACTTAAGGAGACGGTTACTCTTAAGTGGTGCACTCCTCGCACCAACAGTGTAGGTGGCTCAGAACTGCACTACTGCACTGGAGCCTATCGGATCTCGCCTACGGACGTCAACAGCCGACCCTCATCGTGTTTGACCAACTTCTTGCTGAACGGTCGCTCAGTGCTGCTGGAGCAGCCCAGGAAGTCCGGGTCAAAGGTCATCAGCCACATGCTGAGCAGCCACGGCGGGGAGATCTTCCTGCATGTGCTCAATAGCACCCGCTCCACCTTGGAGGACCCTCCCTCCATTAGCGAGGGCTGTGGGGGCCGGGTGACTGACTACCGCATCACTGACTTTGGCGAGTTCATGAGGGAGAACCGTCTGACTCCTGTCCCAGAGTCCCCAGACACTGAGGCTAGTGGGAAGCCCCCGGCGGAGAGAGCCAAAGCCCAGCTGGAGCGTTACACTCGCTATTGGCCAATGATCATTTCCCAGACCACCATCTTCAACATGCAGGCGGTGGTTCCGCTGGCTAACCTcatagtgaaggagagtctgagtGAGGAGGACTTGCTGACCTGCCAGAAGACCGTTTACAACCTGGTGGATATGGAGAGGAAGAACGACCCTCTTCCCATCTCCACTGTGGGCTCCAGGGGAAAGGGCCCTAAAAGGGATGAGCAATACCGCATCATGTGGAACGAGCTGGAGACTCTGGTGAAGACCCACGTAGCTGGCAGTGAGCGACACCAGAGGGTTCTGGACTGCATCATCGCCTGCCGCAGCAAACCCcccgaggaggaggagaggaagaaacgggggaggaagagggaggacaaGGAGGACAAGGCAGAGAAGAGCATCAACAAGGATTCAGAGGACAAAAATTGGCAGGAGTCAGAGAGGCTGAAGGGGGCACTAGAGCGTGGaaaggaggagcagggggagtcGGAGGTCATAAAGGATTCTCCTGACTCGCCAGAGCCTCTCAACAAGAAGCCCCGTCTGGAAGAGATCCAACTACCTGAAAAAGCCAAAGGTCCGGTGTCCCTGCTCACCATGTGGACTAACAGAATCACTGTGGCCAACTCCAGGAAACACCAGGAGTTTGCCGGAAGGATCAGCTCTGTGAACAACAAGGCAGAGTTATACCAGCACCTTAAAGATGAGAATGGAATGGACGTCCACGAGAATGGGAAAGCCACCAGATGATGTGACCTGTCTCTGTACAGGATGCACCCACTCCACCGAACACCTTACCACAGCAGGAATATGAGCTTGGACCAGAGATCATGTCAATCTGAGGTGTATGGACTGTCCTCCCCTACTCTGTCCATACCAGGCATAGATTAATGGGTAGCAGTCAGACTTTGTAATTTTTGTGATTTTTAGGTTTTCTACCCACGTTTGTATGGATAGGCTCACATATTGTGTGAAGCAATAAAGTTGTCATCAGGCAGTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1964695 lncRNA downstream 21354 19822222 ~ 19822537 (-) True LOC110499938
TU1964586 lncRNA downstream 48549 19795078 ~ 19795342 (-) True G1714638
TU1964574 lncRNA downstream 50362 19793235 ~ 19793529 (-) True G1714631
TU1964584 lncRNA downstream 50740 19792902 ~ 19793151 (-) True G1714636
TU1964583 lncRNA downstream 51125 19792409 ~ 19792766 (-) True G1714635
TU1964725 lncRNA upstream 31919 19887900 ~ 19888197 (-) True G1714752
TU1964672 lncRNA upstream 45029 19901010 ~ 19901968 (-) True G1714707
TU1964732 lncRNA upstream 46425 19902406 ~ 19902628 (-) True G1714759
TU1964696 lncRNA upstream 58437 19914418 ~ 19946439 (-) True G1714726
TU1964753 lncRNA upstream 80840 19936821 ~ 19937164 (-) True G1714780
XM_021576995.2 mRNA downstream 1653 19833743 ~ 19842238 (-) True LOC110499939
XM_021576993.2 mRNA downstream 12164 19822251 ~ 19831727 (-) False LOC110499938
XM_021576994.2 mRNA downstream 12165 19822251 ~ 19831726 (-) False LOC110499938
XM_021576991.2 mRNA downstream 12166 19822252 ~ 19831725 (-) False LOC110499938
XM_036957194.1 mRNA downstream 12166 19822252 ~ 19831725 (-) False LOC110499938
XR_002470047.2 mRNA upstream 101260 19957241 ~ 19962354 (-) True LOC110499951
XM_021577001.2 mRNA upstream 150519 20006500 ~ 20013479 (-) True LOC110499944
XM_021576999.2 mRNA upstream 163210 20019191 ~ 20025740 (-) False LOC110499943
XM_021577000.2 mRNA upstream 163210 20019191 ~ 20025740 (-) False LOC110499943
XM_036957204.1 mRNA upstream 165922 20021903 ~ 20025740 (-) True LOC110499943
TU1964375 other downstream 225937 19604171 ~ 19617954 (-) True G1714470
TU1964373 other downstream 237211 19604171 ~ 19606680 (-) False G1714470
TU1964391 other downstream 390213 19451200 ~ 19453678 (-) True G1714475
TU1963419 other downstream 1078087 18765460 ~ 18765804 (-) True G1713755
TU1963377 other downstream 1174566 18668834 ~ 18669325 (-) True G1713719
TU1964728 other upstream 46804 19902785 ~ 19903457 (-) True G1714755
TU1965105 other upstream 138690 19994671 ~ 19995602 (-) True G1715085
TU1965113 other upstream 155329 20011310 ~ 20013426 (-) False G1715091
TU1965116 other upstream 155329 20011310 ~ 20025695 (-) True G1715091
TU1965436 other upstream 688108 20544089 ~ 20545776 (-) True LOC118942908

Expression Profile