RNA id: XM_036957203.1


Basic Information

Item Value
RNA id XM_036957203.1
length 2638
RNA type mRNA
GC content 0.49
exon number 7
gene id LOC110499946
representative True

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 19952514 ~ 19956800 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATTTTGTTTTGAGACGATTTCGCCCTGGCCTTTGAACGGGGCACCTGGTTCACGCCCGGGAGGCAGCCCGGTTCCAAATCGAATGCAATAAACTTTCAGCCGAAGCGAAACACGCCTACACGGGCGCCCGGACGGGATGAATCGAACCCCTCAATGTTCCGGTATAGCGGACACGTCTGGGATTTCCGAGATTACCCACGACCCAACCCAAACAGGAAGTGTAAACACTTCTCACGTAACAGCAGCGCATGTGATAGCCTTTCTCTTCGACTCCTCAGCATTCACCACTTGGGACTCTGATACTGTTTTGCTCAGTTGGTTGGTGTGTGCACCAGAATACTCGAGGCCATGGACTCGATCAGTTGTTCGATCTGCCTGGATCTACTGAAGGATCCAGTGACTATTCCCTGTGGACACAGCTACTGTAAAGGCTGTATCAAGGGATATTGGAGTCTTGATGACCAAAAGGGAATTCACAGCTGCCCCCAGTGCCGACAGACCTTCACCCCAAGACCTGCTCTGAACAGAAACATTCTGCTGGCTGAGTTGGTAGAGAAATTGAAGACCGATTTCAAAACGGTTCCCTCTGCTTCTTGTTTCTCTGGACCTGAAGATGTGAAGTATGATCGTGATGACTCAGCCGCAGCAGCAGAGAGGACGGAGAAACAGGGGCAGCTGAGGGAGAAACGGCAGCAGGTCGGGCTGAGaatctgtgtgagagagaaggagatgcagGACATAAGAAAGGCGGTGATGTCCCTTTCACTTTCAGCACAGGCAGCAGTGGAGCACTGTGAGCTGGTCTTTGCTGAGCTGATCCGCTCCATTGAGAGAAGGCGCTGTgaggtgaaggagctgatcaGCGCCCACCAGAGGGCGTCAGTAAGCCAGGCTGAAGGACTCCTGGTGCGAATGGAGCAGGAGATAGCTGAgctgaagaggagagacaaggagctGGAGCAGCTCGCACAAACAGAGGATAACATTCATTTCCTCAAGACTTTTCAGTCTCTTTGTGTGGCTCCTGGATCTGAGCTCTTACCCTATATCACTGCCAACCAGCACTTCTCCTTTGAAGAAGTGAAGAGCTCCATCTCTGGAATGATGGAGCGACTGGAGGATGTGTTGAAGGAGGAAATGGTCCAGATACCTGGAAAAGTAACGGCTGTCTCCGAAGTCTATGTCCTCAGCCCAAGACCAGAATTAATGGCTGCTGCTGAAGTACATTTTCATCATGAGCCCAAGACCAGAGTGGAGTACTTGGAGAACTACTGCCATCTCACGTTGGATCCCAACTCGGCGTATCAACACCTGCGTCTGTCTGAGTGCAATAGAGAAGTGTCATGGAGTGACAAGGCTCTGTCTTATTCTGACCACCCAGACAGATTCACAGACCATTACCAGGTGTTGTGTAAAGAGGATCTGTCTGGAACCCGCTACTGTGAGGTGGATAGGAGGGGGGAGTGTGAGGTAGCCATCACATACAGAAGCATCAGCAGGAAGGGCGGATTGGAATGTTGCTTTGGTTCCAATGATCAGTCCTGGAGTTTGGTGTGTCGCAACTCGAGTTGTTCCTATTGGCACAATAAGAATAGGACTGATATCCCTGTCCCCTGCTCCaccagagtaggagtgtatctggacaGCAGGGCAGGGACTCTGGCCTTCTACAGCGTCTCGGATACAATGACCCTCCTCCACAGagtccagaccacattcactGAGGACCTCTGTGCTGGGTTTTGGGTTGGTCCTGGTTGTGGATCATCTGTGGCTCTGTGTTGACTGAACGTCATAGAATCAAGTGCattttaaatcaaattgtatttgtcaaatgcgccgaatacaacaggtgtaggcttTACtgtgcttacttacgagccctttcccaacaatgcagagttaaaaagtaggaaaaaatagggaaaaaaatgaaggaaacagtaacacaaaATGACGAGACTATATACAAGTTCTACCTGTACTgactcaatgtgcaggggtacgaggtaatatgtatatgtaggtaagggtaaaagtgactaggcaatcaggatgaataataaacagagtagcagcagtgtatgcgaagagtgtgaaagtgtgtatgtgttggagtgtcagtgtagtatgtgtgggtagagtccagtgagtgtataGAGCCAGTGCTCTATGCACAAGGGGGTCAATGAAAATAGTCCGGGTAGACATTTGATGAAATTGTTCAGCGgtcttatggcttcggggtagaagctgttcaggtgccCTTTGGTCTCAGACTTGGCACTCCTGTACCTCTtgttgtgtggtagcagagagaacagtctatgacatgggtggctggagtctttgaaaaatgtttagggccttcctctgacaccgcctggtatagaggtcctggatggcagggagctcggccccagtgacaAATGGGAAGGAAATATAAGACCGATCACTTGGGAAAGTTGGAGAAAGTTGATTTGCTTAAAATTGTGACCTGGATGAAGGGAGTTGACACTTCATTTAGGAGTCCTGCTGCGAAGCCGCTCTTTATCTACAATGTTTGATTCCAGCTTTACTAATGGGGGAGGGGTGGGGCCATTGTTTTAAAGATTACAATAATAAATTAAAGAAATCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1964640 lncRNA upstream 39388 19912847 ~ 19913157 (+) True G1714679
TU1964627 lncRNA upstream 49156 19903054 ~ 19903389 (+) True G1714666
TU1964636 lncRNA upstream 63014 19889322 ~ 19889531 (+) True G1714675
TU1964635 lncRNA upstream 65219 19887064 ~ 19887326 (+) True G1714674
TU1964613 lncRNA upstream 100945 19849614 ~ 19851600 (+) True G1714654
TU1964788 lncRNA downstream 16662 19973462 ~ 19973841 (+) False LOC110499947
TU1964807 lncRNA downstream 39549 19996349 ~ 19996552 (+) True G1714825
TU1964795 lncRNA downstream 42834 19999634 ~ 20000255 (+) True G1714813
TU1964808 lncRNA downstream 44124 20000924 ~ 20001199 (+) True G1714826
TU1964811 lncRNA downstream 45479 20002279 ~ 20002499 (+) True G1714829
XM_021576998.2 mRNA upstream 628 19939451 ~ 19951917 (+) True LOC110499941
XM_036957202.1 mRNA upstream 17944 19923790 ~ 19934601 (+) False LOC110499949
XM_021577008.2 mRNA upstream 17944 19923794 ~ 19934601 (+) True LOC110499949
NM_001160651.1 mRNA upstream 41773 19907699 ~ 19910772 (+) True ube2n
XM_021577009.2 mRNA upstream 45041 19903585 ~ 19907504 (+) True LOC110499950
XM_021577005.2 mRNA downstream 16646 19973446 ~ 20006379 (+) False LOC110499947
XM_021577006.2 mRNA downstream 16646 19973446 ~ 20006379 (+) False LOC110499947
XR_005038552.1 mRNA downstream 98366 20055166 ~ 20092114 (+) True LOC110499953
NM_001160604.2 mRNA downstream 152325 20109125 ~ 20111713 (+) False nmes1
XM_036957205.1 mRNA downstream 168798 20125598 ~ 20176686 (+) False LOC110499954
TU1963853 other upstream 328631 19602461 ~ 19623914 (+) False G1714090
TU1963818 other upstream 328631 19617394 ~ 19623914 (+) False G1714090
TU1963834 other upstream 364725 19580122 ~ 19587820 (+) False G1714090
TU1963826 other upstream 424414 19486614 ~ 19528131 (+) False G1714090
TU1964921 other downstream 152398 20109198 ~ 20113891 (+) True nmes1
TU1965448 other downstream 601622 20558422 ~ 20558751 (+) True G1715392
TU1965907 other downstream 1041798 20998598 ~ 21000137 (+) False LOC110499980
TU1967360 other downstream 2219163 22175963 ~ 22180897 (+) True G1717161
TU1967725 other downstream 2762119 22718919 ~ 22721074 (+) False G1717516

Expression Profile