RNA id: TU1964921


Basic Information

Item Value
RNA id TU1964921
length 4447
RNA type TUCP
GC content 0.41
exon number 2
gene id nmes1
representative True

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 20109125 ~ 20113891 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGCCTTATAGGATAGACCTACACAGATGAAGGATTTACTATACACAGTAAGAATTGATACCGAATggaatttgaaaaacaaaatgaagTTTGGATTGATTCAGATTATGAGGAAGAGGAAACAGGTGAGTTGCTCTCTATTTCTTGTTTTGGATCAGTGTTTCTATGGTTTCTGATGAAGGTAATTATTTCCTCCTATCCTAGCAAGGTTATTCCCCTCAGGAATTTAAAGGAAATTCCAAATAGAGAATTTAAGCTTGTCTTTACTATCAGGTTTATCTATTTATGGGAATTTCATTTCCCAAGCTTCCTGGATTGAAATACTGTATGAGGACCTTAATTCTCAAAAGGAGTTAAGAACAACCCAGTTATCTACTATAAGAAGTATAAGGCCCTCATCCTGACACCTCTCTCCCAGGTGATTCCTCTGATTGGCTGCATGGCATTGTCTACTGCTGGAGCCATCTTTGCCTCCCTCTACTTCCTATTTACAAAGAATGATGTCATTTTAAATAAAAGTAGAATCCCTGAACCCTGGGAGGGAGTGGACCCATCTAAACCACAGAAGGTGATTTATAACATTACAAGCACTATTTCTATGTCTATTTCTGTCCTCTCTACGTTGGCGTTGGCATCAGTAGCCATTTGTGTCAGTGGTTCCTTCTCTGTTCTGCTTAGTCACACAAACAGAGCAGCGTTGCCAAGTATAACTATAACTCACTCATCGTGGGCGGGAATTATCCCATTTTAACTGTCATCTAAACGTCATTTAAACTAATCTAAACGTCTGTATTCATGGGTTATTCTCTGCATGGGCACCTATTGGTGAAGGAGACAGGCGCCAGTAGTGTTACATGATGGGTGATTGATTGACTGTGGATGTAGTGAGAAGCtagcagtgttggggaagctactctgaaaataaaGTTTAATAAGCTACCAGTTACTTCACACTGAAAGAAGTTAAGCTACTCTAAAGCTACCCCTGtgaaaaatatagtttacttaactaaagcTGCGTTGAATAAGTAGTTCACTACATTGTAACTACTTCATGaaaaattatcatatgtaaaTCTGAATTATAGGTTGgtaatttagcctattaaacacaaaaattatgtttcaagtgagaattaggtAAGTCTTGTTCTGAAAAGGAAAGTAAATGATTGCTTACTTCACCCATATTTAATTTTCTTTCTGCAAAAAAAGTAGTGTGTAGCTCCAgaagttagctacaccgctacatggtaaagaagtagtgtgtagttccagtagttagctacagcaTTACATGGTAAagaagtagtgtgtagttccagtagttagctacagcaTTACATGGTAAagaagtagtgtgtagttccagtagttagctacagcaCTACATGGTAAagaagtagtgtgtagttccagtagttagctacagcaTTACATGGTAAagaagtagtgtgtagttccagttgTTAGCTACAGCACTACATGGTAAAGAAGTAGTGTGtggttccagtagttagctacagcaTTACATATTAAAGAAGTAGTGTGtggttccagtagttagctacaccactacatggtaaaacagttgttatctactttaaaaaaaaatctaaatagacAAAGAACATGTAGTTCAGTTCTCCCCAACACTGGAAGCTAACAATTCCATTTCAatgcagtcaattcaggaaaCTGACATTCTAATCAAGCAATGAGGAAAAATGTCACTTTGCATTGTGAATTGACCAAAtgtaaatggaattgaccccaaccctggtgagCATTTGTAGTAAAATGTGATCAGTAGTGGTGCTTGTTGTTGTAAGTGTTGCTGTTGTGTAAGTGACTGTGTTGTTCCTATTCTGAAGCTGGTCACCATCAACCAGAAGTGGAGGCCGATTGAAGAACTGGAACAGGTGAAGAGCATGACAAGGTGATCTCGCACGtgcgggctctctctctctcgctctctctctccaccctctccctttccctttcccctccccctccatcgGAATCATTTCGACACAGACTAGAGTCTCTAATACTGCACAATAGCTGACTATAAGTGTGACCAAAGCTATTTGTTTGTGAAACATAATGTATGTGTGAGGGTGAAATAAGTTATTGCAATTGAAAATGGGCATGGCTTGTGTTATTAATGATTCATGaggagtgtgtgcctgtgtgatcCAATCTAAAGCAATGGCTGtaggatgacaatgccaccaacagaacaattaaaaatgtaaatgaataacttcaccatgcccaAACaggtattcaatgtctgctttttacatttttacccatctatgTCCTTTACCCATCTATGTTCTTATTTGCGAGGctttgaaaaacctccctggtctttgtggttgtatCTATTTTTGAAATTCAGTGTTTGGGAcccagataattgtgtgtgtagggtacagaaaagcatgtttaacactattattgcacacagtgagtccatgcaacttattatgttgAATTGTTTAGCaaatttcagcttttcatgtttTATTCGTTTGTAAAAATTTCATACAACAAAATTCCACTTTAAAATGatatgtgtgtaggccagtgacaaaaaatatatacatttgatacattttaaattcagcctgtaacacaacaaaatgtggagaaagttaaggggtgtgaatactttctgaaggcactgtattatctCATTATAAAATCATTGTTTAAGGAAAACAACTATGACCACTGATCTGACCTATGACCCCTAAAATGCCGATACTGCACTCTGCCTTTGTATGACCTTCAACAACTAAACACATCAAAAAAAGAAACCTCATCTCACTattcaactgcgtttattttcagcaaacttgacatgtgtaaatatttgtatgaacacagcagattcaacaactgagacataaactgaacaaattccacagacagaaatggaataatgtgtccctgaacaaaggggggggggggggggggggggatcaaaatcaaaagtaacagtcagtatctggtgtggccaccagctgcattaagtactgcagtgcatctcctcatggactgcaccatatttgccagttcttgctgtgacatgttaccccactcttccaccaaggcacctgcaagttcccggacatttctggggggaatggccctagccctcaccctccgatccaacaggtcccagacgtgctcaatgggattgagatccaggctcttcgctggccatggcagaacactgacattcctgtcttgcaggaaatcacgcacagaacgagcagtatggctggtggcattgtcatgctcaaatcaaatcaaattttattttctggagggtcatgtcaggatgagcctgcaggaagggtaccacatgagggaggaggatgtcttccctgtaacacacagcgttgagattgcctgcaatgacaacaagctcagtccgatgatgctgtgacacaccgccccagaccatgacggaccctccacctccaaatcaatcccactccagagtacaggtctcggtgtaacgcacattccttcgacgataaacgagaatccgacaatcacccctggtgagacaaaacctcgactcgtcagtgaagagcactttttgccagtcctgtctggtctagacggtgggtttgtgcccataggcgacgttgttgccggtgatgtctggtgatgacctgccttacaacaggcctctctcagcctattgtggacagtctgagcaatgatggagggattgttcgttcctggtgtaactcgggcagttgttgttgccatcctgtacctgttctgcaggtgtgatgtttcgGATGtacgatcctgtgcaggtgttgttacacgtggtctgccactgcgaggacgatcagctgtccgtcctgtctccctgtagcgctgtcttagacgtctcacagtacggacactgcaatttattgccctggccacatctgcagtcctcatgcctccttgtagcatgcctaagccacgttcacgcagatgagcagggaccctgggcatctttcttttcgtgtttttcagagtcagcagaaaggcctctttagtgtcctaagttttcataactgtgaccttaattgcctaccatctgtaagctgttggtgtcttaacaaccgttccacaggtgcatgttcattaattgtttatggttcattgaacaagcatgggaaacagtgtttaaaccctttacaatgaagatctgtgaatttattttagatttttacgaattatctttgaaagacagggtcctgaaaaagggacgtttctttttttgctgagtttatattggtAATGCAAAAGCAAAGTGCACTATCTAAAATCTAAATGTGTTTATCCAACTTTCTTGGCTttctcatagtgtgtgtgtgtaagggcgtCATGATTGGGATAACCTGAACTCAGGGCCCGATAGAATATCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1964875 lncRNA upstream 33165 20075820 ~ 20076033 (+) True G1714887
TU1964873 lncRNA upstream 34011 20074987 ~ 20075187 (+) True G1714885
TU1964785 lncRNA upstream 100584 20008116 ~ 20008614 (+) True LOC110499947
TU1964784 lncRNA upstream 101362 20005516 ~ 20007836 (+) False LOC110499947
TU1964811 lncRNA upstream 106699 20002279 ~ 20002499 (+) True G1714829
TU1964924 lncRNA downstream 4632 20118523 ~ 20118795 (+) True G1714922
TU1964945 lncRNA downstream 67943 20181834 ~ 20182196 (+) True G1714940
TU1965023 lncRNA downstream 220402 20334293 ~ 20334621 (+) True G1715010
TU1965022 lncRNA downstream 223207 20337098 ~ 20337621 (+) True G1715009
TU1965038 lncRNA downstream 277383 20391274 ~ 20392819 (+) True LOC110499962
XR_005038552.1 mRNA upstream 17084 20055166 ~ 20092114 (+) True LOC110499953
XM_021577005.2 mRNA upstream 102819 19973446 ~ 20006379 (+) False LOC110499947
XM_021577006.2 mRNA upstream 102819 19973446 ~ 20006379 (+) False LOC110499947
XM_021577004.2 mRNA upstream 152398 19952514 ~ 19956800 (+) False LOC110499946
XM_036957203.1 mRNA upstream 152398 19952545 ~ 19956800 (+) True LOC110499946
XM_036957205.1 mRNA downstream 11707 20125598 ~ 20176686 (+) False LOC110499954
XM_036957206.1 mRNA downstream 11708 20125599 ~ 20176686 (+) False LOC110499954
XM_036957207.1 mRNA downstream 11708 20125599 ~ 20176686 (+) False LOC110499954
XM_036957208.1 mRNA downstream 25633 20139524 ~ 20176686 (+) True LOC110499954
XM_021577015.2 mRNA downstream 79217 20193108 ~ 20196983 (+) True LOC110499956
TU1963853 other upstream 485284 19602461 ~ 19623914 (+) False G1714090
TU1963818 other upstream 485284 19617394 ~ 19623914 (+) False G1714090
TU1963839 other upstream 490713 19430821 ~ 19618485 (+) False G1714090
TU1963871 other upstream 521378 19430821 ~ 19587820 (+) False G1714090
TU1963834 other upstream 521378 19580122 ~ 19587820 (+) False G1714090
TU1965448 other downstream 444531 20558422 ~ 20558751 (+) True G1715392
TU1965907 other downstream 884707 20998598 ~ 21000137 (+) False LOC110499980
TU1967360 other downstream 2062072 22175963 ~ 22180897 (+) True G1717161
TU1967725 other downstream 2605028 22718919 ~ 22721074 (+) False G1717516
TU1967724 other downstream 2668594 22782485 ~ 22784445 (+) True G1717516

Expression Profile