RNA id: XM_021577018.2


Basic Information

Item Value
RNA id XM_021577018.2
length 5359
RNA type mRNA
GC content 0.45
exon number 14
gene id LOC110499957
representative True

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 20220435 ~ 20255165 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTATTTGCCCTATAGTGTAAGGCTGAGCTAAAGTACACCAACCTACCCTGTACAACTGCTCTGCTTTGGACCGTGACCCCTTCCCCAGCCCCGCACCACTATAGCCGTAACCATGGACCGCATGGAGCTGAAGAAAGTCTGCACGGAGGCAGACGATGACAGCGCAGACAGTTTGGACGACCGCTTCACAGAGCCCATCGACTCAGAGAAGGCCACCATCAACAGcacccagGACATACCTCCTTTGGTATGTCGGTCTTCAACCTGAGTAATGCGATCATGGGCAGCGGCATCCTGGGTCTCTCCTATGCAATGGCCAACACTGGCATTGTGCTttttgtAGTCCTTCTCTTGGGTGTGGCCATCTTGTCGTTGTACTCCGTTCACTTGCTGCTAATGACTGCAAAAGAAGGAGGCTCTCTCATCTATGAAAAGTTGGGAGAGCGAGCTTTTGGCTGGCCGGGGAAAATGGCTGCGTTTGGATCGATAACCCTTCAAAATATTGGTGCCATGTCCAGCTACCTCTTCATTGTAAAGTATGAGCTGCCAGAAGTGATCCGTGCCTTCATGGGACTGGAGCAGAGCTCTGGTGAATGGTACATGAACGGAAACTACCTGGTTGTGTTTGTGTCCATCGGTATTATCTTGCCTCTCTGCATACTCAAAAACCTGGGCTACCTTGGCTACACCAGTGGATTCTCCCTATCCTGCATGGTGTTTTTCCTGGGAGTGCTGATCTATAAGAAGTACAACCTCCCCTGCCCGATGCCCTTCATGTACCATACCAACCACAGTATGAATGGAACAGCCCTGGGGCCCCACGCCCTGCACAACGGCACCGTCCTCATGGACTTCTCCAGAGCTGACATGTCCCCCGCCTCCTACCTGGACGGCCACCACACCTCAGGGGTCCGCTTCGAACCACACCCCGACGACGTGGAGGAGATGTGCACGCCCAAGTATTTTGTGTTCAACTCTCAGACTGCTTACACTGTTCCCATCCTGGCCTTCTCCTTTGTGTGCCACCCTGAAATTCTACCCATCTACAGTGAACTCAAAGATCGCTCCCGGAGAAAGATGCAGAACGTGTCCAACCTGTCTATCCTGGCCATGCTGGTCATGTACATGTTCTCAGCGCTGTTCGGCTACCTCACTTTCTACGGAAACGTGGAGGCGGAGTTGCTCCACACCTTCACCAAGGTGTATAAGTTTGACACCATGCTCCTGCTGGTCCGTCTGGCTGTCCTGACCGCTGTCACCCTGACTGTCCCCATTGTCCTGTTCCCTATCCGTTCCTCCATCAATACGATGCTGTTCAGCCAACGGGAGTTCAGCTGGGTGCGTCACATGCTCATCGCCGCCTTCATCCTCCTGTTCAACAACCTGCTGGTCATCTTCGTCCCCACCATCAGAGACATTTTCGGCTTCATCGGCTCTTCTGCAGCCACCATGCTCATCTTCATCCTCCCTGCTGCCTTCTATCTACGCCTAGTCAAGTCCGTGCCGATGCACTCCGTGCAGAAGATCTCGGCGGCCATTTTCCTGGTGGTGGGCATCATCTTCATGTTTAGCAGCCTGTCGCTCATCGTGATGGACTGGATCCACAACCCTCCCGGCTCCAGCGGTGGTCACTAAGAGGACCCCCCCcttacctccaccccctctcacCTCAAACCCCCTCCCCTGACTGTGCCTTGGGGTTAAGGTCACCGGGCCCGGGGGGTGCCCCCACACATCACCTACAGACTGAGTACGTCAGCGTACTGTAAAGGGGCGGTTTGCTTTTCTCAACCCCCACCCCTTTCCACAAAGTATTACTGGAGGGGACTACGTTCTACGACTGAAACAGATTCTTTTAAGTTCGTTATTCTTTttctttcttgttgttgttggatGGTTTAGTTCTGTAGAATCCTCCACAACAGGGGCTCGCCGAAAGGACACAAAGTAATCAAGGAGGACGGTCAGAAACGGGAGAAAAGACGTCAGACGCTGCGGCTGTTGCTGCGCGCCCTGCCGTAGTTTTCTAGATAGCCCATCATCTCTACTCTGTGATATTCCCTGAGAAGAGGAAAAAATACGACCAGGGACCTCAACCATTAAACGGTCTAGAGAACCCAAAGAGAACGAGAACTGATCTGAGAGCTGCCACTACTGGAGCTGGTTGTTATTGCAGGTGTGGCTTCAGGGCAATGGGCTCTGCACACTTGAAgattagagagagatgtgggacAAGGGTTCAAAAACAAAGAGCACTTTTAGCAtatgtttcaagttttaatgtatttttaacacatccagacacacacaagaaacacacacacataccatctaGCCATCTACACTAATTGGAGCTATTTTGCTTActgtcaaaatgtatttttgtacaCCTAGGGAAAAGAAAAGTCGATATAACCGTACATAGGACAGCTGTAGTATCTTTTTCCGAGCTAGAGCCTGGAAAAAGTTGTTCTGAGGGATATTTGTAAACTAGGTTTTGTAAAGTagtttctattttattttatactCTCACAATCAATCACATCACCAAAGTTTGTGCACACACATATTTCTCAGTGGCTAGTGTGTTGCTCTCAAAACATCCCTTGATAGCAATCATCAGATCAGACGTTAGCAATCGTACACATTGACAGACACATACACCAAGTCAACATTTTCAGCCATGTCCATTCTCCCAATCAACACTTAACGCGATGATCAACACACACTGTCAGCCATTTTGAAACCGCCCATTAGACTGAGCTTCAAACAAGAGACTCCATCCATTCAGTGTTATTGTCGCAGAGATTTGAATGTTGCCAAGTTTTGAATGTACCGGTACTTGGCCAAACGTCTACTGATCAACTGAATGACAGTTTACGTGTTTCTTTCTTTGCCTTCTTGTTCACTCTTGTCCAATGTGTCACACTACAGAGCCCTTGGGTCAATTGCAGCGAACAATACCAGGAGATGAGCTCATGTTGATGGCTTGAGATCATTTTCAACTTGTAACTCCATCTCTTCCTAAACTTCATGTGAAGTAACTGTGCTATGAAATACAACTAGTGAACGCTAGTTTCAGTGAAGAGGAACAACAGCAGAACTCTATGAGAGTTAAAGAAGGTCTACTGGCAGTATAACATATAGGTTATTTAGCTATTTGTGTTGGCACAGCGATCCTATAACCCATGAGAATGTTTTTCTTCTATCCCAGTGTGTAAAACGATATCTTGTAACAAAATTCAATTGTGGGAAATAATATTGTGGGTAAAATAAGCAATGGATTGAACCTCCAGACTGTGCTGTTTCTGAGATACAAGATAAGTTATTTTATCTGTGTTTGCAGTTCACaccttaaaggggaaatctgcagttgctacatttttggacttataaattaatgatttgtacccattgattcttgaaaaataTCAATTGTGAATGCCCCAAGAGCTTAGTTTAAccgtcgtaccccatcagaacccaaaatatatgattggtttactccaatgtttgtaaactacagaaatgtaaacaatatatagcctcaaaacatggttaaagccatcattttgatatcatggaaggtcagtccttgcatccgtaTACCTCAACCTTCAGCTTTTTCCGGAACAGACGGGGACAACACTTTGTTATTGCTTCAattgctgattgcccctttaagttcAATATGGGCCATAATGTCAAATTTGGAAAAGATTAGTGAAATGAAATGCATCCACTGTTACTTAGCAGGCTTGTCATTTGGTGATTTGTTTATGCCAGATTGCTGTTGATAGTAGAGTTAACATAAACAGTATGTGTTTATTACTGTAATTGTGACTCGTGTTACtgtaatttacatcatttccACGGACCATCATTTCTTAAAATGCCCTAGTTAATGAATTAACACCACGATAAATGAATTTCTAAATATTGTGCCGTGCTGAAAAAACATTTGTCAGTAGGTGGCTACATTAGCAGTTTGCATTCGAAGCATAGAATACCTGTTTTCTTAGGTGTTAAAGCAGATACGTGTTCTGAATGGATCCAGCCAGAATGGACAACATTTACAGATCCTTTGTGGATCTACATATGCATGAAACAAATTGATATTTCAAATGAAATGGTATAGTGTGTGCATGTTTTGGATTACAAACATGGTCTTTTCTGACAACTTGTATATGCTTTGTAAATAATCGTATTATATGGTACTCACTGAATTATATGTGTGGGGGGTTGTAAGGGATTTTTACCAGAAGTCTTCTACAATGTTATTTTAGTATTCAATGTTTTCGATTTTGCTCTATGatgatatttcttttttttttatggaaGCTTGTACATTTGTAGAAAATCTCTACCCCTTTTCATTTCTTTATAGTTACATATCTGGAGGACCTAGACCTTGAATTAATGAATGGTTTTGTCGGTAATGTTGTCTGATTCCTCAGTCCTACAGGGGCTGCAGGGTCCAAGTAGAATGTCAGTGTTGATGTCTTGCGAGACTTGGGTAGATATTGCCTATGTTGAGCTGAAGTATTTGATTCATGCCATGCGGGTGGGTGCGCTGTCAAAAGATCAATGACGTTCAGATCACTTGCTTTTAGTAAGAACCACCCTACAGCCACATTTGAGAAGTGGTCCGCATCGATAGGGGCTGCTGGGTCTTTGCTGAAATTCCTCCTCAGCCTCAGTTACTGTATGTGAAGATACACTTCATGAAGTGTATTGACAAAAACCTTACTAATGTGTGAGAATCCAGAAACCAACCTTTGCCTTAATAATTGCAAACTTCAGTTCATCTAGGGAGCAAACCTTAGGGTCAGGTACGGCACCAGATGTAAGACCTTGGTCAAAGTGATTTTGTCATTCGTTTTTTAACATTCAAAAGGggcatgttttttttcccccaatgAAGAACTAGAGCGGAGAGCACAAATGTTGTTCTCAGACACTCAAGAAGGGGGTCGGGGAGGGGCTCTTTCAGCGCTATGCCCTCAATATCACTCAGGTACAACTTTAGACTGCCGTTGCATGACATGCTGTAGTCACGACAGTTGACTTTAATATACGTTAAATGACCAAACACTCTGGCATGCAAACTACATGTCATGCGTTTGACAACATAAAGTAGGCTTCATGCCGGAGAGTTTACCCCAAAATCATCTGCCTTATCGGTAACCTGGCCTGAAAGAAGCACTGGGTCAGCATCAGTGTCCTGCCGTTCAGTGTCTGCTTCCTGTGGATCAACTAACATTCAATTGTATATTTGACTGAACAAAGGGGATTTTTGTATCAGTGAAGCTGTTTCAATATCATGTAACATGAACAATAAAAATGTGAAATAAACCTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1964945 lncRNA upstream 52800 20181834 ~ 20182196 (+) True G1714940
TU1964924 lncRNA upstream 116201 20118523 ~ 20118795 (+) True G1714922
TU1964875 lncRNA upstream 158963 20075820 ~ 20076033 (+) True G1714887
TU1964873 lncRNA upstream 159809 20074987 ~ 20075187 (+) True G1714885
TU1964785 lncRNA upstream 226382 20008116 ~ 20008614 (+) True LOC110499947
TU1965023 lncRNA downstream 79128 20334293 ~ 20334621 (+) True G1715010
TU1965022 lncRNA downstream 81933 20337098 ~ 20337621 (+) True G1715009
TU1965038 lncRNA downstream 136109 20391274 ~ 20392819 (+) True LOC110499962
TU1965057 lncRNA downstream 145634 20400799 ~ 20401003 (+) True G1715039
TU1965058 lncRNA downstream 146424 20401589 ~ 20401806 (+) True G1715040
XM_021577015.2 mRNA upstream 38013 20193108 ~ 20196983 (+) True LOC110499956
XM_036957205.1 mRNA upstream 58310 20125598 ~ 20176686 (+) False LOC110499954
XM_036957211.1 mRNA downstream 12532 20267697 ~ 20294996 (+) False LOC110499958
XM_021577019.2 mRNA downstream 28371 20283536 ~ 20294996 (+) True LOC110499958
XM_036957213.1 mRNA downstream 109682 20364847 ~ 20392813 (+) False LOC110499962
XM_021577025.2 mRNA downstream 109683 20364848 ~ 20392813 (+) False LOC110499962
XM_021577026.2 mRNA downstream 120431 20375596 ~ 20392813 (+) False LOC110499962
TU1964921 other upstream 121105 20109198 ~ 20113891 (+) True nmes1
TU1963853 other upstream 611082 19602461 ~ 19623914 (+) False G1714090
TU1963818 other upstream 611082 19617394 ~ 19623914 (+) False G1714090
TU1963834 other upstream 647176 19580122 ~ 19587820 (+) False G1714090
TU1963821 other upstream 735773 19498128 ~ 19499223 (+) False G1714090
TU1965448 other downstream 303257 20558422 ~ 20558751 (+) True G1715392
TU1965907 other downstream 743433 20998598 ~ 21000137 (+) False LOC110499980
TU1967360 other downstream 1920798 22175963 ~ 22180897 (+) True G1717161
TU1967725 other downstream 2463754 22718919 ~ 22721074 (+) False G1717516
TU1967724 other downstream 2527320 22782485 ~ 22784445 (+) True G1717516

Expression Profile