RNA id: XM_021577019.2


Basic Information

Item Value
RNA id XM_021577019.2
length 3708
RNA type mRNA
GC content 0.44
exon number 15
gene id LOC110499958
representative True

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 20267697 ~ 20294996 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GCTGATGCAACGCTGGATAGATATAAAGGTGCAGACAAACCCCACCTCGTTTAGAACAACGTAAATTCAAGTTGCGTATCACATCGTTGGCAATTTGATTTATATAACATCTTAAAATTGATCTTTTAAGCTATTCTTATACAATTGTATCCACATTGTAAGTTATTTTCCTATTTAATTGGGACAATTGAATTGTATCTTAGATACATTTATTGTTACTGAATAAAACTTCAAGGATAAATAGTTTCTAGTAGAATATTGGAGACATTCAACGGTGAAGGAATTGTTTCAAATTAAAATTGAAAAGGATCGCTACTTTTTCATAAGGATTTTATTCGTTTTCTCAAAGCATGAAACAGGCCACTGCAAAAACAGAGATGAGCCGCTTCAACATTTCCCCGGATGAGGATAGCAGTGTCAGTTCCAATAGTCATGAATACAGTTCCTGTCCAACCAAGAAGGTTCCTATTGACAGTCAATATCCCGATATGGATGCGGAGAGTCAAAACTTCCTTCCAGACTACCACCTGGACAAGAAGAAGTATGAAACAGATTATCATCCAGGCACCGCCTCTTTTGGGATGTCAGTCTTCAACCTGGGCAATGCTATTATGGGTAGTGGCATCCTTGGTCTCTCCTATGCCATGGCCAACACTGGCATTGCGCTCTTTGTAATTCTCCTGGTGGCTGTGTCCATCTTCTCCCTGTACTCTGTGCACTTGCTTCTAAAGACAGCCAATGAAGGAGGGTCGCTGGTCTATGAACAGCTGGGTTACAAGGCCTTCGGCATGCCCGGGAAACTGGCTGcatccatctccatcaccatgcaGAACATCGGAGCCATGTCCAGCTACCTCTACATTGTGAAGTACGAGCTGCCGATCGTTATCCAAGCCTTCATGGGAGCTACCAATGGAGAGTGGTATGCGAACGGGGACTATCTTGTGATCTTGGTGTCAGTTGTCATCATCCTGCCACTTTCACTTCTCAGGAACCTTGGTTACCTTGGTTACACAAGTGGTTTCTCCCTGCTTTGCATGGTCTTCTTCCTGATTGTGGTGATCTATAAGAAGTTCCAGATCCCGTGCCCTTTCATCCCTAACATGGACGTGATACTGAACGAGACGGTTAGCAAGATCCTGAACAACACGGTGGGCTTCCTCAACACCACCGCCGTCGTCTACAACGAGGACGTCTGCACACCCAAATACTTTGTCTTTAACTCTCAGACTGTGTATGCTGTTCCTATCCTGACGTTCGCCTTTGTCTGCCACCCCGCAGTCCTGCCCATGTACGAGGAGCTTAAAGATCGTTCCCGTAGAAAGATGCAGGGCGTGGCCAACGTGTCTTTCCTGGCCATGTTCATCATGTACCTGCTGGCTGCTCTCTTCGGATATCTGACCTTCAACGTGAATGTGGAGCCCGAACTTCTGCACACCTACTCCAAGGTCTACAAGTCTGACGTGATCCTACTCATCGTTCGTCTGGCCGTGCTGACAGCTGTCACCCTGACTGTCCCTGTGGTGCTGTTTCCCatcCGCACGTCGGTCAACCAGCTGCTGTGTGCCTCCAAGGAGTTCAGCTGGATCCGCCACACCATCATCACCGTGGTTCTGCTGGCCAGCACAAATTGTCTGGTCATCTTCGTCCCCACCATCAGAGACATCTTCGGCTTCATTGGTGCATCTGCGGCAGCCATGTTGATCTTCATCCTGCCCTCGGCCTTCTATATCAAACTGGTCAAGAAGGAGCCCATGAAGTCTGTGCAGAAAATTGGGgcatCCATCTTCCTGTGCAGTGGTTTCTTCGTCATGATCGGCAGCTTGACCCTCATCACCCTTGACTGGATCAACAACGCCTCACAAGCCTCCGACGGACACTAGGATACCTCATCCACCAGGGGGGGGGAGAACCACACCATCCGCAGCTCAGCCGCTAAACATCTGACCGCTAAGACTGCTacccaagaagaagaaaatgacCTCACATACAACAATGTTCGGCTTTGAACTCTAAGCAACAGACTATACCATTCCAATGAGAATGTACTGAACTTTGTACAGTATGCAGTTAAGCCACACATGTGGTGATTTTCTTTTTTCCTTTCGTTGTGCTTTCTTTGTTTCGTTTCCCGTTTTGGACGTTTTCTCTTTTTTTGTTAttctggtacagttgaaacattTGACGGTGCCTCAAACAGGGATGGTGTAGTTGTAGAGTTCCACTGCAGCTCATATTCAGGTACTGCGTGTGAGCTCAGCTTTTTGGGCACGGCGACAACTTTTCTCAACCGGGGCCGCACGCAACCGCGGACATCCTGGAATCCCAGAACTCATTAGAGGTGAAGAACGTGACAGCAGACTCTACTCGACGTGAATAATTTAGCGTTCAACttcttattttttaaaacattgccAAAAAAGGTATTTGTAATATgtgtttatatatttaaaaagcACTTAATGTTCAGCACACTCGTGAGGAAATTGTCTGTTCACGGACTACTAGACCGCTTATCAGTATTTGTACCAAGGCTGTGTGACCTAGCTAGTGGTGTCGGCTTCACTTGTAAAATGCTTAGTATGAATCAACGAAACCTGCCTTCTCAAAACCCCACACTGGAAGTTGCAAAATATCTCTTTTAAAGAAATGTATTACGCATTGTAATGTATAGAAGACCTTGTTCAAATCTTATACAGCGATGACACTACTGCTTGTAGATGGGGCATGCTCCCTGTCAAATCCCCCGGATGCTAAGGGGAGGGGGACGTTACACTTTTTTTCTTTAAGGAAGAATATCTTGAATTTGACCACATGCGTGGTTGTAATGTACCTGTTTACCTTGCAAAAATAGTTTGTTTTCTGACTGTTTTGAGACCGCACATAACCAAACGTCACATCAACGTTACATAATGGCTTCCATGCAGAACTGAGGGAAGGCGGAGGAATGTCGTGTGAGCTGCTCAGTGTATCTGTCAAAATGTCAGTGTTTTTCTAACGGTTGGCAGCTTCTCCTTATTAAACATAACCGTAGTTACAAAAAAATAACGAAATGATTGATAAGGATAGTGTAAAGTTGGCTTGTCACCTCGTCACAAACACGAGGCGGGCGGCTCACTGCTTCCAATGTTAACCTCACACATCATCCAAACTGTTATTGTCCTGCGATTATTTATGGAAGAACATGAAATCAATGTAATTTTATCTATTTTACTATATTTATATATTGTACATATATGTGTAAATATCTATGAGTTGAACTACTGTATATATGCTCTGTTTTGTTTAACCTTCTATTGGCATTTCACTAAAACTAGAGCTGTAAAAATTGCTGGTGAATTTGGTCTTTAtcaatttaccccccccccccctatgatTCAGTATGGAGCTGTTCACTTTCATTTCTGGAACCACAGTGAGAGAGTTTTCGCTCTTCCACTTGCTGTAATTCTGAAAGACCATGTTTAAAGTGGAACCTACCAAAACATAGTGGCAGTGGTCTTTGTGTAACACACTTCACACTTGTTCTATTTGTGACCCTGATAACCTTTTCTCACATGCTTTATGCACGTCTTGGTTAGAGAGTATGTGAGCCATCTCTTGACCTCAGGAGCAGAGGGCATCGCCCACCAGTGTTACACTCTTGTTTCAATGAAACACTATGTACATCATGTAATTATTGTCCAAATAAAGTCAAAGATAATCCCA

Function

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K14207 SLC38A2, SNAT2; solute carrier family 38 (sodium-coupled neutral amino acid transporter), member 2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1964945 lncRNA upstream 101340 20181834 ~ 20182196 (+) True G1714940
TU1964924 lncRNA upstream 164741 20118523 ~ 20118795 (+) True G1714922
TU1964875 lncRNA upstream 207503 20075820 ~ 20076033 (+) True G1714887
TU1964873 lncRNA upstream 208349 20074987 ~ 20075187 (+) True G1714885
TU1964785 lncRNA upstream 274922 20008116 ~ 20008614 (+) True LOC110499947
TU1965023 lncRNA downstream 39297 20334293 ~ 20334621 (+) True G1715010
TU1965022 lncRNA downstream 42102 20337098 ~ 20337621 (+) True G1715009
TU1965038 lncRNA downstream 96278 20391274 ~ 20392819 (+) True LOC110499962
TU1965057 lncRNA downstream 105803 20400799 ~ 20401003 (+) True G1715039
TU1965058 lncRNA downstream 106593 20401589 ~ 20401806 (+) True G1715040
XM_021577017.2 mRNA upstream 28371 20220435 ~ 20255165 (+) False LOC110499957
XM_036957210.1 mRNA upstream 28371 20220449 ~ 20255165 (+) False LOC110499957
XM_021577018.2 mRNA upstream 28371 20234996 ~ 20255165 (+) True LOC110499957
XM_021577016.2 mRNA upstream 28375 20231593 ~ 20255161 (+) False LOC110499957
XM_021577015.2 mRNA upstream 86553 20193108 ~ 20196983 (+) True LOC110499956
XM_036957213.1 mRNA downstream 69851 20364847 ~ 20392813 (+) False LOC110499962
XM_021577025.2 mRNA downstream 69852 20364848 ~ 20392813 (+) False LOC110499962
XM_021577026.2 mRNA downstream 80600 20375596 ~ 20392813 (+) False LOC110499962
XM_021577027.2 mRNA downstream 108693 20403689 ~ 20414330 (+) True LOC110499963
XM_036956486.1 mRNA downstream 122491 20417487 ~ 20421625 (+) False med21
TU1964921 other upstream 169645 20109198 ~ 20113891 (+) True nmes1
TU1963853 other upstream 659622 19602461 ~ 19623914 (+) False G1714090
TU1963818 other upstream 659622 19617394 ~ 19623914 (+) False G1714090
TU1963834 other upstream 695716 19580122 ~ 19587820 (+) False G1714090
TU1963821 other upstream 784313 19498128 ~ 19499223 (+) False G1714090
TU1965448 other downstream 263426 20558422 ~ 20558751 (+) True G1715392
TU1965907 other downstream 703602 20998598 ~ 21000137 (+) False LOC110499980
TU1967360 other downstream 1880967 22175963 ~ 22180897 (+) True G1717161
TU1967725 other downstream 2423923 22718919 ~ 22721074 (+) False G1717516
TU1967724 other downstream 2487489 22782485 ~ 22784445 (+) True G1717516

Expression Profile